Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g081400 Amaranthus hybridus HOM05D005850 ORTHO05D007405 7.2e-158 560.5 269 100.0
AUR62011029 Chenopodium quinoa HOM05D005850 ORTHO05D007405 2.0e-91 339.7 335 57.6
EL10Ac8g18542 Beta vulgaris HOM05D005850 ORTHO05D007405 1.3e-87 327.0 329 56.5
QL02p086096 Quercus lobata HOM05D005850 ORTHO05D007405 1.2e-80 303.9 343 49.3
Dinv41576 Davidia involucrata HOM05D005850 ORTHO05D007405 2.1e-80 303.1 340 49.1
Hma1.2p1_1968F.1_g309450 Hydrangea macrophylla HOM05D005850 ORTHO05D007405 2.1e-80 303.1 343 49.6
FAN26G3074 Fragaria x ananassa HOM05D005850 ORTHO05D007405 2.7e-80 302.8 295 54.2
GSVIVG01015433001 Vitis vinifera HOM05D005850 ORTHO05D007405 6.0e-80 301.6 294 54.4
CiPaw.03G235100 Carya illinoinensis HOM05D005850 ORTHO05D007405 1.0e-79 300.8 343 49.0
FAN26G0510 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.3e-79 300.4 294 53.4
Glyma.12G008700 Glycine max HOM05D005850 ORTHO05D007405 3.0e-79 299.3 343 49.0
CSS0027687 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 3.9e-79 298.9 343 48.7
FvH4_1g05370 Fragaria vesca HOM05D005850 ORTHO05D007405 8.7e-79 297.7 295 53.2
Phvul.011G012400 Phaseolus vulgaris HOM05D005850 ORTHO05D007405 8.7e-79 297.7 343 48.7
VMungo1127G0399 Vigna mungo HOM05D005850 ORTHO05D007405 1.1e-78 297.4 294 53.7
CSS0015458 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 1.5e-78 297.0 342 48.5
RcHm_v2.0_Chr2g0091051 Rosa chinensis HOM05D005850 ORTHO05D007405 1.9e-78 296.6 295 53.2
CANSAT56G0565 Cannabis sativa HOM05D005850 ORTHO05D007405 2.5e-78 296.2 342 50.0
FAN19G1578 Fragaria x ananassa HOM05D005850 ORTHO05D007405 2.5e-78 296.2 295 53.2
Atru.chr7.1296 Acer truncatum HOM05D005850 ORTHO05D007405 3.3e-78 295.8 294 53.4
Ciclev10008544m.g Citrus clementina HOM05D005850 ORTHO05D007405 7.4e-78 294.7 343 47.8
Glyma.09G227900 Glycine max HOM05D005850 ORTHO05D007405 7.4e-78 294.7 343 48.4
MD02G1062200 Malus domestica HOM05D005850 ORTHO05D007405 3.7e-77 292.4 296 53.4
Cfa003291 Carpinus fangiana HOM05D005850 ORTHO05D007405 6.3e-77 291.6 295 53.2
FAN28G1812 Fragaria x ananassa HOM05D005850 ORTHO05D007405 6.3e-77 291.6 295 52.5
TPR.G30190 Trifolium pratense HOM05D005850 ORTHO05D007405 1.8e-76 290.0 294 52.7
Lj3g0026332 Lotus japonicus HOM05D005850 ORTHO05D007405 5.3e-76 288.5 343 47.2
Prupe.7G227200 Prunus persica HOM05D005850 ORTHO05D007405 5.3e-76 288.5 295 52.9
vmacro20668 Vaccinium macrocarpon HOM05D005850 ORTHO05D007405 5.3e-76 288.5 324 48.5
arahy.Tifrunner.gnm1.ann1.JQ4W8U Arachis hypogaea HOM05D005850 ORTHO05D007405 9.0e-76 287.7 360 45.0
Actinidia20338 Actinidia chinensis HOM05D005850 ORTHO05D007405 1.2e-75 287.3 294 52.7
CSS0006300 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 2.0e-75 286.6 359 46.8
Cc06_g09340 Coffea canephora HOM05D005850 ORTHO05D007405 2.6e-75 286.2 295 52.5
Aqoxy7G01830 Aquilegia oxysepala HOM05D005850 ORTHO05D007405 3.4e-75 285.8 343 46.6
Eucgr.C04135 Eucalyptus grandis HOM05D005850 ORTHO05D007405 3.4e-75 285.8 344 47.1
DCAR_028730 Daucus carota HOM05D005850 ORTHO05D007405 4.5e-75 285.4 343 46.6
Psat0s3467g0080 Pisum sativum HOM05D005850 ORTHO05D007405 7.6e-75 284.6 294 52.0
Lalb_Chr19g0140271 Lupinus albus HOM05D005850 ORTHO05D007405 1.3e-74 283.9 335 48.1
Medtr0314s0030 Medicago truncatula HOM05D005850 ORTHO05D007405 1.3e-74 283.9 294 51.7
PSO782G2614 Papaver somniferum HOM05D005850 ORTHO05D007405 1.7e-74 283.5 294 52.4
Sed0018565 Sechium edule HOM05D005850 ORTHO05D007405 1.7e-74 283.5 343 46.6
arahy.Tifrunner.gnm1.ann1.2WTJ41 Arachis hypogaea HOM05D005850 ORTHO05D007405 3.8e-74 282.3 368 44.3
Gohir.A06G060700 Gossypium hirsutum HOM05D005850 ORTHO05D007405 3.8e-74 282.3 294 51.7
CsaV3_2G002440 Cucumis sativus L. HOM05D005850 ORTHO05D007405 1.1e-73 280.8 343 46.6
PGR102G2365 Punica granatum HOM05D005850 ORTHO05D007405 1.9e-73 280.0 296 51.0
PSO063G4477 Papaver somniferum HOM05D005850 ORTHO05D007405 7.2e-73 278.1 294 51.7
Migut.J01174 Erythranthe guttata HOM05D005850 ORTHO05D007405 1.2e-72 277.3 295 50.2
MELO3C004544.2 Cucumis melo HOM05D005850 ORTHO05D007405 2.1e-72 276.6 343 45.5
Gohir.D06G059100 Gossypium hirsutum HOM05D005850 ORTHO05D007405 2.7e-72 276.2 344 46.5
Carub.0007s2916 Capsella rubella HOM05D005850 ORTHO05D007405 3.6e-72 275.8 342 45.9
Nn8g39265 Nelumbo nucifera HOM05D005850 ORTHO05D007405 3.6e-72 275.8 343 46.1
COL.COLO4_34934 Corchorus olitorius HOM05D005850 ORTHO05D007405 6.1e-72 275.0 343 45.5
Sabra18G0064500 Salix brachista HOM05D005850 ORTHO05D007405 6.1e-72 275.0 351 44.4
Potri.018G076700 Populus trichocarpa HOM05D005850 ORTHO05D007405 3.0e-71 272.7 343 44.9
AL9U10250 Arabidopsis lyrata HOM05D005850 ORTHO05D007405 5.1e-71 271.9 343 45.5
THA.LOC104808745 Tarenaya hassleriana HOM05D005850 ORTHO05D007405 1.5e-70 270.4 342 46.2
A04p08720 Brassica napus HOM05D005850 ORTHO05D007405 1.9e-70 270.0 342 46.2
BraA04t16569Z Brassica rapa HOM05D005850 ORTHO05D007405 1.9e-70 270.0 342 46.2
C04p42500 Brassica napus HOM05D005850 ORTHO05D007405 3.3e-70 269.2 342 46.2
BcaC02g09427 Brassica carinata HOM05D005850 ORTHO05D007405 4.3e-70 268.9 342 45.9
BolC4t25826H Brassica oleracea HOM05D005850 ORTHO05D007405 4.3e-70 268.9 342 45.9
ECA234G3981 Erigeron canadensis HOM05D005850 ORTHO05D007405 9.7e-70 267.7 295 49.8
FAN23G2543 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.3e-69 267.3 295 50.8
Gorai.010G068900 Gossypium raimondii HOM05D005850 ORTHO05D007405 1.3e-69 267.3 355 45.1
Sp7g10960 Schrenkiella parvula HOM05D005850 ORTHO05D007405 2.2e-69 266.5 342 45.0
BcaB03g16095 Brassica carinata HOM05D005850 ORTHO05D007405 6.3e-69 265.0 343 45.2
Nitab4.5_0004979g0100 Nicotiana tabacum HOM05D005850 ORTHO05D007405 1.4e-68 263.8 345 45.8
Thhalv10025099m.g Eutrema salsugineum HOM05D005850 ORTHO05D007405 1.8e-68 263.5 343 44.6
ATR0037G042 Amborella trichopoda HOM05D005850 ORTHO05D007405 3.1e-68 262.7 294 49.3
Nitab4.5_0010299g0010 Nicotiana tabacum HOM05D005850 ORTHO05D007405 3.1e-68 262.7 345 45.2
Manes.16G069601 Manihot esculenta HOM05D005850 ORTHO05D007405 4.1e-68 262.3 277 50.2
MBI01_g03369_MAGBIO Magnolia biondii HOM05D005850 ORTHO05D007405 5.3e-68 261.9 343 43.4
TWI32G0506 Tripterygium wilfordii HOM05D005850 ORTHO05D007405 5.3e-68 261.9 320 46.9
HanXRQChr12g0355831 Helianthus annuus HOM05D005850 ORTHO05D007405 1.2e-67 260.8 297 48.1
AT4G13400 Arabidopsis thaliana HOM05D005850 ORTHO05D007405 2.6e-67 259.6 328 45.7
Os05g0556000 Oryza sativa ssp. japonica HOM05D005850 ORTHO05D007405 3.4e-67 259.2 336 44.6
Thhalv10025558m.g Eutrema salsugineum HOM05D005850 ORTHO05D007405 7.7e-67 258.1 294 48.6
Aa31LG9G4350 Aethionema arabicum HOM05D005850 ORTHO05D007405 1.3e-66 257.3 342 44.4
MSTRG.19610 Avicennia marina HOM05D005850 ORTHO05D007405 1.3e-66 257.3 292 49.3
Sc07g0007400 Simmondsia chinensis HOM05D005850 ORTHO05D007405 2.2e-66 256.5 300 49.7
Lsat_1_v5_gn_5_100240 Lactuca sativa HOM05D005850 ORTHO05D007405 1.1e-65 254.2 310 47.4
HPP92_003437 Vanilla planifolia HOM05D005850 ORTHO05D007405 1.1e-65 254.2 254 54.7
Sopen04g019720 Solanum pennellii HOM05D005850 ORTHO05D007405 1.4e-65 253.8 295 47.8
unitig_22.g6630 Utricularia gibba HOM05D005850 ORTHO05D007405 6.1e-64 248.4 293 48.1
Duzib168G1614 Durio zibethinus HOM05D005850 ORTHO05D007405 3.3e-62 242.7 321 45.2
TAR636G0790 Trochodendron aralioides HOM05D005850 ORTHO05D007405 7.4e-62 241.5 261 51.0
Rhsim01G0091700 Rhododendron simsii HOM05D005850 ORTHO05D007405 1.8e-60 236.9 527 33.0
Hma1.2p1_1968F.1_g309460 Hydrangea macrophylla HOM05D005850 ORTHO05D007405 2.4e-60 236.5 225 55.6
Ca_14665_v3 Cicer arietinum L. HOM05D005850 ORTHO05D007405 9.1e-60 234.6 254 50.4
Peaxi162Scf00560g00618 Petunia axillaris HOM05D005850 ORTHO05D007405 6.5e-58 228.4 260 47.3
Thecc.09G114700 Theobroma cacao HOM05D005850 ORTHO05D007405 3.9e-55 219.2 220 52.7
Zm00001eb343200 Zea mays HOM05D005850 ORTHO05D007405 2.8e-53 213.0 339 37.8
AUR62033402 Chenopodium quinoa HOM05D005850 ORTHO05D007405 2.6e-46 189.9 104 87.5
SMO266G0057 Selaginella moellendorffii HOM05D005850 ORTHO05D007405 5.3e-44 182.2 279 36.9
Mapoly0029s0010 Marchantia polymorpha HOM05D005850 ORTHO05D007405 1.6e-43 180.6 294 39.1
Zm00001eb295310 Zea mays HOM05D005850 ORTHO05D007405 1.6e-43 180.6 175 53.1
Hund09180 Selenicereus undatus HOM05D005850 ORTHO05D007405 2.7e-40 169.9 104 78.8
Pp3c8_16220 Physcomitrium patens HOM05D005850 ORTHO05D007405 8.8e-39 164.9 271 37.6
MBI01_g03372_MAGBIO Magnolia biondii HOM05D005850 ORTHO05D007405 2.2e-37 160.2 302 34.4
SMO266G0037 Selaginella moellendorffii HOM05D005850 ORTHO05D007405 3.7e-37 159.5 283 35.7
Haze_25681 Corylus avellana HOM05D002586 ORTHO05D007521 1.6e-35 154.1 113 68.1
MD02G1050500 Malus domestica HOM05D005850 ORTHO05D007405 7.7e-35 151.8 157 52.2
ClCG11G002620 Citrullus lanatus HOM05D005850 ORTHO05D007405 1.0e-34 151.4 104 68.3
SMO297G0022 Selaginella moellendorffii HOM05D005850 ORTHO05D007405 1.7e-34 150.6 264 34.5
Solyc04g049620.2 Solanum lycopersicum HOM05D005850 ORTHO05D007405 5.5e-33 145.6 104 65.4
AUR62033401 Chenopodium quinoa HOM05D005850 ORTHO05D007405 1.3e-29 134.4 172 47.7
Hund09181 Selenicereus undatus HOM05D005850 ORTHO05D007405 2.7e-27 126.7 159 47.8
CBR_g37310 Chara braunii HOM05D005850 ORTHO05D007405 5.0e-26 122.5 411 26.8
Lj7E642T0 Lonicera japonica HOM05D005850 ORTHO05D007405 1.6e-24 117.5 71 77.5
CARHR218970 Cardamine hirsuta HOM05D005850 ORTHO05D007405 4.0e-23 112.8 186 38.7
MD00G1220200 Malus domestica HOM05D005850 ORTHO05D007405 4.0e-23 112.8 120 52.5
Cre02.g104100 Chlamydomonas reinhardtii HOM05D005850 ORTHO05D007405 1.5e-22 110.9 335 27.2
Cpa.g.sc23.140 Carica papaya HOM05D005850 ORTHO05D007405 9.8e-22 108.2 160 41.9
MD02G1053400 Malus domestica HOM05D005850 ORTHO05D007405 6.4e-21 105.5 97 58.8
AagrBONN_evm.TU.Sc2ySwM_344.854 Anthoceros agrestis HOM05D005850 ORTHO05D007405 5.9e-19 99.0 191 32.5
MD02G1052000 Malus domestica HOM05D005850 ORTHO05D007405 8.0e-16 88.6 95 49.5
Haze_25682 Corylus avellana HOM05D005850 ORTHO05D007405 3.1e-15 86.7 198 32.8
FvH4_4g25970 Fragaria vesca HOM05D005850 ORTHO05D007405 2.0e-14 84.0 52 78.8
FAN12G1654 Fragaria x ananassa HOM05D005850 ORTHO05D007405 2.0e-14 84.0 117 43.6
SEGI_17149 Sequoiadendron giganteum HOM05D005850 ORTHO05D007405 2.6e-14 83.6 72 54.2
MD02G1054000 Malus domestica HOM05D005850 ORTHO05D007405 7.5e-14 82.0 80 52.5
Cpa.g.sc23.141 Carica papaya HOM05D005850 ORTHO05D007405 1.1e-09 68.2 44 68.2
Glyma.19G094301 Glycine max HOM05D005850 ORTHO05D007405 4.3e-09 66.2 37 73.0
Lsat_1_v5_gn_8_57120 Lactuca sativa HOM05D006802 ORTHO05D008507 7.3e-09 65.5 162 29.6
FAN12G0472 Fragaria x ananassa HOM05D005850 ORTHO05D007405 2.8e-08 63.5 49 69.4
Nitab4.5_0000252g0180 Nicotiana tabacum HOM05D006802 ORTHO05D008507 6.2e-08 62.4 72 37.5
Os10g0208500 Oryza sativa ssp. japonica HOM05D006802 ORTHO05D008507 6.2e-08 62.4 96 35.4
THA.LOC104801985 Tarenaya hassleriana HOM05D006802 ORTHO05D008507 2.3e-07 60.5 169 24.9
C04p29940 Brassica napus HOM05D000738 ORTHO05D000675 1.5e-06 57.8 160 27.5
Pp3c22_5720 Physcomitrium patens HOM05D006802 ORTHO05D008507 2.0e-06 57.4 82 32.9
Pp3c22_5780 Physcomitrium patens HOM05D006802 ORTHO05D008507 2.0e-06 57.4 82 32.9
CDE05G0787 Ceratophyllum demersum HOM05D006802 ORTHO05D008507 3.4e-06 56.6 74 39.2
BraA04t15733Z Brassica rapa HOM05D006802 ORTHO05D000675 4.4e-06 56.2 168 26.2
Solyc09g065580.4 Solanum lycopersicum HOM05D006802 ORTHO05D008507 4.4e-06 56.2 65 40.0
AagrBONN_evm.TU.Sc2ySwM_368.2173 Anthoceros agrestis HOM05D006802 ORTHO05D008507 5.8e-06 55.8 70 41.4
BolC4t24525H Brassica oleracea HOM05D006802 ORTHO05D000675 5.8e-06 55.8 160 26.9
Lj1A51G14 Lonicera japonica HOM05D006802 ORTHO05D008507 5.8e-06 55.8 109 29.4
Sp5g00240 Schrenkiella parvula HOM05D006802 ORTHO05D008507 5.8e-06 55.8 62 40.3
ECA236G2804 Erigeron canadensis HOM05D006802 ORTHO05D008507 7.5e-06 55.5 109 31.2
Thhalv10006021m.g Eutrema salsugineum HOM05D006802 ORTHO05D008507 7.5e-06 55.5 108 29.6
Sabra02G0040100 Salix brachista HOM05D006802 ORTHO05D008507 7.5e-06 55.5 87 32.2
Potri.002G049300 Populus trichocarpa HOM05D006802 ORTHO05D008507 9.9e-06 55.1 75 34.7


User provided reference genes

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