Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.7e-160 568.5 279 100.0
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 7.8e-139 497.3 244 99.6
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 7.3e-121 437.6 246 85.4
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 1.2e-118 430.3 246 83.3
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 2.3e-114 416.0 223 86.5
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 1.9e-113 412.9 246 77.6
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 1.9e-113 412.9 246 79.3
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 2.8e-112 409.1 246 78.5
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 2.8e-112 409.1 246 78.0
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 6.2e-112 407.9 250 77.6
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 6.2e-112 407.9 262 74.4
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 8.1e-112 407.5 248 78.2
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 1.1e-111 407.1 248 78.2
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.4e-111 406.8 246 77.2
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 1.4e-111 406.8 246 77.2
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 2.4e-111 406.0 246 77.2
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 3.1e-111 405.6 246 77.2
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 4.0e-111 405.2 242 78.1
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 6.9e-111 404.4 246 76.8
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 9.0e-111 404.1 246 76.8
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 1.2e-110 403.7 241 79.3
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 1.5e-110 403.3 247 77.3
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.5e-110 403.3 246 76.8
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 1.5e-110 403.3 246 76.8
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 2.0e-110 402.9 240 80.4
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 2.0e-110 402.9 246 76.8
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 2.0e-110 402.9 246 76.8
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 2.0e-110 402.9 246 76.8
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 3.4e-110 402.1 246 78.0
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 4.5e-110 401.7 246 76.0
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 4.5e-110 401.7 248 77.0
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 4.5e-110 401.7 248 77.4
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 5.8e-110 401.4 246 76.8
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 7.6e-110 401.0 223 84.3
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 7.6e-110 401.0 246 76.4
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 7.6e-110 401.0 242 77.3
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 9.9e-110 400.6 223 83.4
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 9.9e-110 400.6 246 77.6
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 9.9e-110 400.6 246 76.8
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 1.3e-109 400.2 246 77.2
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 1.3e-109 400.2 248 77.0
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 1.3e-109 400.2 246 76.8
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.7e-109 399.8 246 76.0
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.7e-109 399.8 246 76.0
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 2.2e-109 399.4 246 76.0
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 2.2e-109 399.4 247 76.5
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 2.2e-109 399.4 226 81.9
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 2.2e-109 399.4 226 81.0
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 2.2e-109 399.4 246 77.2
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 2.9e-109 399.1 246 77.2
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 2.9e-109 399.1 246 76.0
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 2.9e-109 399.1 246 75.2
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 3.8e-109 398.7 247 76.5
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 3.8e-109 398.7 246 75.6
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 6.4e-109 397.9 246 76.0
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 8.4e-109 397.5 247 76.1
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 1.1e-108 397.1 246 76.0
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 1.4e-108 396.7 225 81.8
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.4e-108 396.7 246 75.6
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.4e-108 396.7 246 75.2
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 3.2e-108 395.6 244 76.6
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 3.2e-108 395.6 246 75.6
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 3.2e-108 395.6 248 75.4
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 5.4e-108 394.8 246 74.8
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 5.4e-108 394.8 238 76.9
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 7.1e-108 394.4 246 76.4
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 7.1e-108 394.4 246 76.4
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 7.1e-108 394.4 232 78.9
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 7.1e-108 394.4 232 78.4
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 7.1e-108 394.4 248 76.2
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 1.2e-107 393.7 248 75.8
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 1.2e-107 393.7 225 79.6
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 1.6e-107 393.3 226 80.1
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 2.1e-107 392.9 246 75.6
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 2.7e-107 392.5 246 76.0
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 2.7e-107 392.5 246 75.6
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 4.6e-107 391.7 223 80.7
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 4.6e-107 391.7 246 74.4
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 7.9e-107 391.0 222 80.6
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 5.1e-106 388.3 228 78.1
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 6.7e-106 387.9 234 76.5
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 1.1e-105 387.1 228 78.9
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 1.5e-105 386.7 246 72.8
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 1.5e-105 386.7 246 73.6
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 1.9e-105 386.3 234 76.5
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 4.3e-105 385.2 223 79.8
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 5.6e-105 384.8 221 80.5
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 5.6e-105 384.8 221 80.5
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 5.6e-105 384.8 225 78.2
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 5.6e-105 384.8 232 76.7
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 7.4e-105 384.4 241 75.1
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 7.4e-105 384.4 246 72.8
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 7.4e-105 384.4 223 78.9
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 9.6e-105 384.0 246 72.0
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 1.3e-104 383.6 238 75.2
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 1.3e-104 383.6 246 73.2
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 3.6e-104 382.1 246 72.8
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 1.1e-103 380.6 246 74.8
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 1.1e-103 380.6 223 78.0
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 4.0e-103 378.6 252 72.6
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 4.0e-103 378.6 246 74.0
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 1.2e-102 377.1 235 75.7
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 1.2e-102 377.1 232 74.6
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 1.5e-102 376.7 225 76.0
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 2.0e-102 376.3 246 72.0
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 6.4e-101 371.3 243 71.6
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 4.2e-100 368.6 225 74.7
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 9.3e-100 367.5 225 76.0
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 2.1e-99 366.3 222 73.9
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 2.7e-99 365.9 224 75.4
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 1.3e-98 363.6 243 71.2
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 2.3e-98 362.8 297 62.0
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 3.9e-98 362.1 219 75.3
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 6.7e-98 361.3 244 68.9
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 8.7e-98 360.9 222 73.4
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 1.9e-97 359.8 253 68.0
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 2.5e-97 359.4 224 71.9
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 5.6e-97 358.2 246 68.3
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 4.8e-96 355.1 225 72.9
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 8.1e-96 354.4 224 71.0
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 8.1e-96 354.4 224 70.1
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 1.1e-95 354.0 245 69.8
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 1.8e-95 353.2 225 72.4
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 3.1e-95 352.4 256 65.6
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 6.9e-95 351.3 201 81.1
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 2.2e-93 346.3 246 70.3
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 2.2e-93 346.3 222 72.1
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 6.5e-93 344.7 227 70.9
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 1.1e-92 344.0 226 69.9
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.1e-79 300.8 225 61.3
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 5.3e-79 298.5 196 77.0
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 4.5e-78 295.4 245 58.4
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.3e-77 293.9 177 81.4
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 1.9e-76 290.0 224 60.3
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 2.7e-75 286.2 219 60.7
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 2.7e-75 286.2 222 62.2
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 3.6e-75 285.8 149 87.2
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 4.6e-75 285.4 228 58.8
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 3.2e-60 236.1 155 70.3
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 6.3e-56 221.9 118 83.1
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.2e-53 213.4 118 80.5
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 1.1e-52 211.1 118 80.5
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 8.0e-51 204.9 118 75.4
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 5.9e-46 188.7 147 63.9
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 5.5e-44 182.2 116 65.5
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 2.8e-40 169.9 231 40.3
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 7.3e-36 155.2 83 81.9
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 6.1e-35 152.1 121 66.1
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 1.4e-34 151.0 160 51.2
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.0e-29 134.8 261 33.0
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 1.9e-28 130.6 250 34.0
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 5.6e-28 129.0 63 93.7
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.6e-27 127.5 63 92.1
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.8e-27 126.7 63 92.1
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 1.1e-26 124.8 227 36.6
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 3.7e-24 116.3 235 37.0
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 4.1e-23 112.8 79 65.8
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 1.2e-22 111.3 255 31.0
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 1.1e-20 104.8 232 32.8
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 9.5e-20 101.7 156 37.8
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 9.9e-17 91.7 48 91.7
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 1.9e-15 87.4 146 39.0
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 3.9e-13 79.7 94 46.8
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.6e-11 73.2 38 86.8
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 3.1e-10 70.1 120 39.2
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 6.8e-10 68.9 67 49.3
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 3.5e-06 56.6 41 56.1


User provided reference genes

Program Settings