Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 3.0e-142 508.4 250 100.0
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 3.1e-139 498.4 251 98.4
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 4.1e-139 498.0 251 98.0
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 1.2e-138 496.5 251 97.2
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 5.0e-137 491.1 250 96.4
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 5.0e-137 491.1 250 96.4
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 5.0e-137 491.1 250 96.4
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 5.0e-137 491.1 250 96.4
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 5.0e-137 491.1 250 96.0
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 5.0e-137 491.1 250 96.4
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 5.0e-137 491.1 250 96.4
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 2.7e-135 485.3 251 96.4
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 6.1e-135 484.2 250 95.2
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 3.0e-134 481.9 250 94.8
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 3.0e-134 481.9 250 94.8
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.0e-134 481.9 250 94.8
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.0e-134 481.9 250 94.8
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.0e-134 481.9 250 94.8
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 3.0e-134 481.9 250 94.8
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 3.0e-134 481.9 250 95.2
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 2.6e-133 478.8 250 94.4
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 5.4e-131 471.1 250 93.6
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 9.1e-131 470.3 250 93.6
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 1.2e-130 469.9 250 93.6
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 1.6e-130 469.5 250 93.2
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 3.5e-130 468.4 250 93.2
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 2.2e-129 465.7 250 93.2
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 6.5e-129 464.2 249 92.0
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 1.1e-128 463.4 250 92.4
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 1.1e-128 463.4 250 92.4
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 1.1e-128 463.4 250 92.4
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 1.1e-128 463.4 250 92.4
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 1.2e-127 459.9 250 92.4
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 2.7e-127 458.8 250 92.0
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 2.7e-127 458.8 250 92.0
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 2.7e-127 458.8 250 92.0
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 3.6e-127 458.4 250 91.6
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 4.7e-127 458.0 250 91.2
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 8.0e-127 457.2 250 89.6
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 8.0e-127 457.2 250 91.6
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 4.0e-126 454.9 250 91.2
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 1.3e-124 449.9 250 90.8
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 2.7e-122 442.2 250 89.2
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 4.1e-115 418.3 250 86.4
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 1.2e-114 416.8 245 84.9
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 1.2e-114 416.8 245 84.9
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.6e-114 416.4 251 86.5
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 2.5e-112 409.1 250 83.2
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 1.6e-111 406.4 250 83.6
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 1.5e-109 399.8 235 86.8
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 2.6e-109 399.1 242 83.9
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 3.7e-108 395.2 250 81.6
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 2.7e-106 389.0 250 81.2
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 3.5e-106 388.7 250 80.4
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 5.0e-105 384.8 250 80.4
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 6.6e-105 384.4 250 80.0
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 8.6e-105 384.0 250 81.2
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 9.8e-101 370.5 250 77.6
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.1e-96 357.1 250 73.6
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 3.3e-96 355.5 185 93.5
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 2.0e-93 346.3 219 80.4
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 6.4e-92 341.3 185 91.4
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 6.4e-92 341.3 185 91.4
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 6.4e-92 341.3 185 91.4
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 7.8e-90 334.3 234 76.5
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 3.0e-89 332.4 185 88.6
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 5.1e-89 331.6 229 77.3
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 4.6e-82 308.5 249 67.1
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 1.5e-80 303.5 247 66.0
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 1.1e-78 297.4 197 78.2
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 3.5e-74 282.3 147 97.3
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 1.0e-73 280.8 146 97.3
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.5e-72 276.9 238 62.2
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 1.8e-70 270.0 158 82.9
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.8e-62 243.4 226 61.9
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 1.3e-57 227.3 183 67.8
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 3.0e-57 226.1 231 59.3
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 6.7e-57 224.9 157 75.8
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 9.0e-54 214.5 134 75.4
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 3.4e-53 212.6 118 93.2
CARHR288190 Cardamine hirsuta HOM05D004537 ORTHO05D005492 3.8e-52 209.1 101 95.0
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 8.5e-52 208.0 175 65.7
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 2.3e-49 199.9 211 55.5
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 7.7e-45 184.9 109 82.6
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 1.3e-44 184.1 133 75.9
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 3.8e-44 182.6 249 40.2
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 5.0e-44 182.2 96 97.9
SalBow1G2743 Salvia bowleyana HOM05D004537 ORTHO05D005492 1.1e-43 181.0 91 92.3
Aa31csc464G10 Aethionema arabicum HOM05D004537 ORTHO05D005492 3.2e-43 179.5 87 93.1
SGA_v2.0_scaffold400G50927 Striga asiatica HOM05D004537 ORTHO05D005492 5.5e-43 178.7 90 92.2
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 1.2e-42 177.6 174 55.2
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 5.1e-41 172.2 111 82.9
Lsat_1_v5_gn_8_134521 Lactuca sativa HOM05D004537 ORTHO05D005492 1.7e-39 167.2 94 83.0
SHI36146 Sapria himalayana HOM05D004537 ORTHO05D005492 6.3e-39 165.2 85 90.6
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 9.4e-35 151.4 88 80.7
Lsat_1_v5_gn_4_114400 Lactuca sativa HOM05D004537 ORTHO05D005492 7.9e-34 148.3 87 79.3
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 7.4e-32 141.7 177 52.0
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 1.7e-31 140.6 106 69.8
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 9.7e-24 114.8 64 89.1
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 2.8e-23 113.2 189 46.6
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 1.4e-22 110.9 60 88.3
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 1.6e-21 107.5 57 94.7
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 2.7e-21 106.7 108 61.1
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 2.9e-20 103.2 70 77.1
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 3.8e-20 102.8 64 79.7
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 3.8e-20 102.8 56 92.9
CAN.G1103.8 Capsicum annuum HOM05D004537 ORTHO05D005492 1.5e-19 100.9 53 84.9
HanXRQChr16g0503301 Helianthus annuus HOM05D004537 ORTHO05D005492 2.5e-19 100.1 73 67.1
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 4.2e-19 99.4 55 89.1
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 1.6e-18 97.4 65 78.5
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 1.6e-18 97.4 64 78.1
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 3.6e-18 96.3 54 90.7
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 1.5e-16 90.9 74 64.9
ECA240G1937 Erigeron canadensis HOM05D004537 ORTHO05D011667 1.7e-15 87.4 47 93.6
SHI30018 Sapria himalayana HOM05D004537 ORTHO05D005492 2.9e-12 76.6 56 67.9
MELO3C021574.2 Cucumis melo HOM05D004537 ORTHO05D005492 2.8e-10 70.1 50 76.0
Nitab4.5_0003938g0030 Nicotiana tabacum HOM05D004537 ORTHO05D005492 8.8e-09 65.1 41 75.6
TPR.G9938 Trifolium pratense HOM05D004537 ORTHO05D005492 8.8e-09 65.1 46 73.9
SHI20134 Sapria himalayana HOM05D004537 ORTHO05D005492 1.5e-08 64.3 39 79.5
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 1.1e-06 58.2 30 93.3
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 4.1e-06 56.2 33 87.9


User provided reference genes

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