Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g078110 Amaranthus hybridus HOM05D036908 ORTHO05D031040 4.3e-56 221.1 111 100.0
EL10Ac3g07482 Beta vulgaris HOM05D036908 ORTHO05D031040 1.7e-12 76.3 75 44.0
EL10Ac4g09019 Beta vulgaris HOM05D036908 ORTHO05D031040 4.2e-11 71.6 74 41.9
MELO3C031071.2 Cucumis melo HOM05D000984 ORTHO05D001096 6.7e-09 64.3 102 34.3
Aa31LG3G11770 Aethionema arabicum HOM05D000984 ORTHO05D001096 8.8e-09 63.9 85 36.5
MD04G1010300 Malus domestica HOM05D000984 ORTHO05D036612 1.1e-08 63.5 70 38.6
Sopen09g034780 Solanum pennellii HOM05D000984 ORTHO05D015033 1.9e-08 62.8 100 34.0
GSVIVG01021058001 Vitis vinifera HOM05D000984 ORTHO05D001096 4.3e-08 61.6 77 33.8
Solyc09g091883.1 Solanum lycopersicum HOM05D000984 ORTHO05D015033 9.7e-08 60.5 100 33.0
Atru.chr2.320 Acer truncatum HOM05D000984 ORTHO05D001096 1.3e-07 60.1 91 31.9
SalBow8G1369 Salvia bowleyana HOM05D000984 ORTHO05D001096 1.3e-07 60.1 79 35.4
vmacro00462 Vaccinium macrocarpon HOM05D000984 ORTHO05D001096 1.3e-07 60.1 74 35.1
SalBow8G5311 Salvia bowleyana HOM05D000984 ORTHO05D001096 1.7e-07 59.7 79 35.4
Peaxi162Scf00047g00433 Petunia axillaris HOM05D000984 ORTHO05D015033 2.2e-07 59.3 97 35.1
Sed0006974 Sechium edule HOM05D000984 ORTHO05D001096 2.2e-07 59.3 80 37.5
Cre16.g675861 Chlamydomonas reinhardtii HOM05D000984 ORTHO05D001096 2.8e-07 58.9 71 40.8
CAN.G1635.15 Capsicum annuum HOM05D000984 ORTHO05D015033 3.7e-07 58.5 100 33.0
Aqoxy5G00014 Aquilegia oxysepala HOM05D000984 ORTHO05D001096 4.8e-07 58.2 82 29.3
Os01g0918200 Oryza sativa ssp. japonica HOM05D000984 ORTHO05D001096 4.8e-07 58.2 103 30.1
Rhsim09G0057700 Rhododendron simsii HOM05D000984 ORTHO05D001096 4.8e-07 58.2 69 36.2
Atru.chr2.308 Acer truncatum HOM05D000984 ORTHO05D001096 6.3e-07 57.8 91 30.8
Atru.chr2.348 Acer truncatum HOM05D000984 ORTHO05D001096 6.3e-07 57.8 91 30.8
Migut.K01223 Erythranthe guttata HOM05D000984 ORTHO05D001096 8.2e-07 57.4 77 33.8
Peaxi162Scf00253g00076 Petunia axillaris HOM05D000984 ORTHO05D001096 8.2e-07 57.4 79 31.6
MBI16_g04470_MAGBIO Magnolia biondii HOM05D000984 ORTHO05D001096 1.1e-06 57.0 91 31.9
BraA10t43403Z Brassica rapa HOM05D000984 ORTHO05D001096 1.4e-06 56.6 96 33.3
Atru.chr5.2066 Acer truncatum HOM05D000984 ORTHO05D001096 1.8e-06 56.2 78 29.5
CiPaw.04G104500 Carya illinoinensis HOM05D000984 ORTHO05D001096 1.8e-06 56.2 87 27.6
Cc05_g14200 Coffea canephora HOM05D000984 ORTHO05D001096 1.8e-06 56.2 86 29.1
ECA236G1058 Erigeron canadensis HOM05D000984 ORTHO05D001096 1.8e-06 56.2 91 25.3
RcHm_v2.0_Chr3g0488501 Rosa chinensis HOM05D000984 ORTHO05D029377 1.8e-06 56.2 88 35.2
TWI39G1156 Tripterygium wilfordii HOM05D000984 ORTHO05D001096 1.8e-06 56.2 78 28.2
Atru.chr2.347 Acer truncatum HOM05D000984 ORTHO05D001096 2.4e-06 55.8 79 32.9
AUR62020361 Chenopodium quinoa HOM05D000984 ORTHO05D001096 2.4e-06 55.8 81 28.4
Atru.chr6.3253 Acer truncatum HOM05D000984 ORTHO05D001096 3.1e-06 55.5 77 28.6
C07p55120 Brassica napus HOM05D000984 ORTHO05D001096 3.1e-06 55.5 78 28.2
CSS0045474 Camellia sinensis var. sinensis HOM05D000984 ORTHO05D001096 3.1e-06 55.5 92 28.3
MELO3C014183.2 Cucumis melo HOM05D000984 ORTHO05D001096 3.1e-06 55.5 87 27.6
CsaV3_3G004860 Cucumis sativus L. HOM05D000984 ORTHO05D001096 3.1e-06 55.5 87 27.6
Duzib213G0713 Durio zibethinus HOM05D000984 ORTHO05D001096 3.1e-06 55.5 78 28.2
Lsat_1_v5_gn_9_92480 Lactuca sativa HOM05D000984 ORTHO05D001096 3.1e-06 55.5 77 28.6
Peaxi162Scf00428g01025 Petunia axillaris HOM05D000984 ORTHO05D001096 3.1e-06 55.5 95 32.6
BcaC06g32724 Brassica carinata HOM05D000984 ORTHO05D001096 4.1e-06 55.1 78 28.2
Carub.0007s1400 Capsella rubella HOM05D000984 ORTHO05D001096 4.1e-06 55.1 77 28.6
CAN.G1251.3 Capsicum annuum HOM05D000984 ORTHO05D001096 4.1e-06 55.1 87 33.3
CDE02G3505 Ceratophyllum demersum HOM05D000984 ORTHO05D001096 4.1e-06 55.1 80 30.0
AUR62015861 Chenopodium quinoa HOM05D000984 ORTHO05D001096 4.1e-06 55.1 78 28.2
AUR62015862 Chenopodium quinoa HOM05D000984 ORTHO05D001096 4.1e-06 55.1 81 28.4
AUR62020363 Chenopodium quinoa HOM05D000984 ORTHO05D001096 4.1e-06 55.1 78 28.2
ClCG09G011240 Citrullus lanatus HOM05D000984 ORTHO05D001096 4.1e-06 55.1 105 30.5
LjContig00029g0019867 Lotus japonicus HOM05D000984 ORTHO05D001096 4.1e-06 55.1 77 28.6
Os01g0918300 Oryza sativa ssp. japonica HOM05D000984 ORTHO05D001096 4.1e-06 55.1 79 29.1
PSO357G0689 Papaver somniferum HOM05D000984 ORTHO05D001096 4.1e-06 55.1 79 35.4
PGR083G0399 Punica granatum HOM05D000984 ORTHO05D001096 4.1e-06 55.1 88 27.3
PGR142G1187 Punica granatum HOM05D000984 ORTHO05D001096 4.1e-06 55.1 86 27.9
QL09p048665 Quercus lobata HOM05D000984 ORTHO05D001096 4.1e-06 55.1 80 28.8
Thecc.01G223500 Theobroma cacao HOM05D000984 ORTHO05D001096 4.1e-06 55.1 86 29.1
Aa31LG5G12110 Aethionema arabicum HOM05D000984 ORTHO05D001096 5.3e-06 54.7 77 28.6
Carub.0008s1548 Capsella rubella HOM05D000984 ORTHO05D001096 5.3e-06 54.7 87 26.4
Cfa002583 Carpinus fangiana HOM05D000984 ORTHO05D001096 5.3e-06 54.7 81 27.2
Ciclev10022993m.g Citrus clementina HOM05D000984 ORTHO05D001096 5.3e-06 54.7 81 28.4
DCAR_007868 Daucus carota HOM05D000984 ORTHO05D001096 5.3e-06 54.7 88 26.1
Thhalv10026654m.g Eutrema salsugineum HOM05D000984 ORTHO05D001096 5.3e-06 54.7 77 28.6
HanXRQChr15g0470581 Helianthus annuus HOM05D000984 ORTHO05D001096 5.3e-06 54.7 77 28.6
Nn1g07910 Nelumbo nucifera HOM05D000984 ORTHO05D001096 5.3e-06 54.7 95 30.5
Potri.014G190300 Populus trichocarpa HOM05D000984 ORTHO05D001096 5.3e-06 54.7 80 28.8
Sc06g0009650 Simmondsia chinensis HOM05D000984 ORTHO05D001096 5.3e-06 54.7 90 26.7
PGSC0003DMG400023103 Solanum tuberosum HOM05D000984 ORTHO05D001096 5.3e-06 54.7 82 25.6
TWI18G0999 Tripterygium wilfordii HOM05D000984 ORTHO05D001096 5.3e-06 54.7 92 25.0
TWI36G0601 Tripterygium wilfordii HOM05D000984 ORTHO05D001096 5.3e-06 54.7 80 27.5
TWI75G0206 Tripterygium wilfordii HOM05D000984 ORTHO05D001096 5.3e-06 54.7 80 27.5
vmacro14745 Vaccinium macrocarpon HOM05D000984 ORTHO05D001096 5.3e-06 54.7 88 27.3
CAN.G478.1 Capsicum annuum HOM05D000984 ORTHO05D001096 6.9e-06 54.3 83 28.9
CARHR268520 Cardamine hirsuta HOM05D000984 ORTHO05D001096 6.9e-06 54.3 87 26.4
CiPaw.03G147900 Carya illinoinensis HOM05D000984 ORTHO05D001096 6.9e-06 54.3 81 27.2
Duzib170G0784 Durio zibethinus HOM05D000984 ORTHO05D001096 6.9e-06 54.3 78 28.2
Glyma.18G165200 Glycine max HOM05D000984 ORTHO05D001096 6.9e-06 54.3 102 27.5
Lalb_Chr03g0041621 Lupinus albus HOM05D000984 ORTHO05D001096 6.9e-06 54.3 77 28.6
MD04G1010400 Malus domestica HOM05D000984 ORTHO05D001096 6.9e-06 54.3 90 33.3
Manes.13G046700 Manihot esculenta HOM05D000984 ORTHO05D001096 6.9e-06 54.3 80 28.8
Phvul.008G129000 Phaseolus vulgaris HOM05D000984 ORTHO05D001096 6.9e-06 54.3 99 27.3
Rhsim01G0255000 Rhododendron simsii HOM05D000984 ORTHO05D001096 6.9e-06 54.3 77 28.6
Sabra14G0142600 Salix brachista HOM05D000984 ORTHO05D001096 6.9e-06 54.3 80 28.8
SalBow8G2544 Salvia bowleyana HOM05D000984 ORTHO05D001096 6.9e-06 54.3 81 28.4
Hund02035 Selenicereus undatus HOM05D000984 ORTHO05D001096 6.9e-06 54.3 76 28.9
Hund18403 Selenicereus undatus HOM05D000984 ORTHO05D001096 6.9e-06 54.3 87 27.6
Solyc07g064880.4 Solanum lycopersicum HOM05D000984 ORTHO05D001096 6.9e-06 54.3 78 28.2
Sopen07g033080 Solanum pennellii HOM05D000984 ORTHO05D001096 6.9e-06 54.3 78 28.2
PGSC0003DMG400022207 Solanum tuberosum HOM05D000984 ORTHO05D001096 6.9e-06 54.3 78 28.2
TAR362G0265 Trochodendron aralioides HOM05D000984 ORTHO05D001096 6.9e-06 54.3 87 27.6
TAR633G1651 Trochodendron aralioides HOM05D000984 ORTHO05D001096 6.9e-06 54.3 80 28.8
Ah.06g182380 Amaranthus hybridus HOM05D000984 ORTHO05D001096 9.1e-06 53.9 78 26.9
Ah.06g182410 Amaranthus hybridus HOM05D000984 ORTHO05D001096 9.1e-06 53.9 78 26.9
AT5G55160 Arabidopsis thaliana HOM05D000984 ORTHO05D001096 9.1e-06 53.9 87 26.4
Cc05_g02960 Coffea canephora HOM05D000984 ORTHO05D001096 9.1e-06 53.9 86 27.9
Migut.H01798 Erythranthe guttata HOM05D000984 ORTHO05D001096 9.1e-06 53.9 90 24.4
HanXRQChr04g0108201 Helianthus annuus HOM05D000984 ORTHO05D001096 9.1e-06 53.9 80 27.5
Lalb_Chr04g0249991 Lupinus albus HOM05D000984 ORTHO05D001096 9.1e-06 53.9 88 26.1
Lalb_Chr10g0105621 Lupinus albus HOM05D000984 ORTHO05D001096 9.1e-06 53.9 88 26.1
MCO07G657 Micromonas commoda HOM05D000984 ORTHO05D001096 9.1e-06 53.9 76 30.3
Peaxi162Scf00235g00518 Petunia axillaris HOM05D000984 ORTHO05D001096 9.1e-06 53.9 78 28.2
vmacro09359 Vaccinium macrocarpon HOM05D000984 ORTHO05D001096 9.1e-06 53.9 86 26.7
VMungo1383G0346 Vigna mungo HOM05D000984 ORTHO05D001096 9.1e-06 53.9 99 27.3


User provided reference genes

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