Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g077440 Amaranthus hybridus HOM05D007667 ORTHO05D008033 3.3e-223 778.1 403 100.0
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.4e-72 277.7 339 55.2
EL10Ac3g07362 Beta vulgaris HOM05D007667 ORTHO05D008033 3.3e-66 256.5 392 48.2
Hund19052 Selenicereus undatus HOM05D007667 ORTHO05D008033 8.6e-46 188.7 418 36.8
MD12G1111200 Malus domestica HOM05D007667 ORTHO05D008033 7.3e-37 159.1 417 36.9
PGR142G2092 Punica granatum HOM05D007667 ORTHO05D008033 6.1e-36 156.0 430 36.0
Ah.04g150340 Amaranthus hybridus HOM05D003123 ORTHO05D003492 8.0e-36 155.6 151 57.6
Potri.006G026600 Populus trichocarpa HOM05D007667 ORTHO05D008033 3.7e-33 146.7 386 33.4
Potri.016G024600 Populus trichocarpa HOM05D007667 ORTHO05D008033 7.0e-32 142.5 391 33.5
Sabra06G0019700 Salix brachista HOM05D007667 ORTHO05D008033 1.2e-31 141.7 393 32.6
Sabra16G0030500 Salix brachista HOM05D007667 ORTHO05D008033 3.0e-30 137.1 394 33.0
GSVIVG01025830001 Vitis vinifera HOM05D007667 ORTHO05D008033 3.0e-30 137.1 420 34.8
Lj1g0016001 Lotus japonicus HOM05D007667 ORTHO05D008033 3.3e-29 133.7 406 35.2
CANSAT01G1982 Cannabis sativa HOM05D007667 ORTHO05D008033 7.3e-29 132.5 410 32.4
QL07p015392 Quercus lobata HOM05D007667 ORTHO05D008033 1.2e-28 131.7 407 33.2
CiPaw.09G161700 Carya illinoinensis HOM05D007667 ORTHO05D008033 4.7e-28 129.8 419 30.8
Medtr7g087970 Medicago truncatula HOM05D007667 ORTHO05D008033 6.2e-28 129.4 405 34.1
Cfa019904 Carpinus fangiana HOM05D007667 ORTHO05D008033 8.0e-28 129.0 394 35.0
Psat0s3111g0200 Pisum sativum HOM05D007667 ORTHO05D008033 1.4e-27 128.3 402 32.1
TAR623G0652 Trochodendron aralioides HOM05D007667 ORTHO05D008033 3.1e-27 127.1 435 32.0
arahy.Tifrunner.gnm1.ann1.B2YDCU Arachis hypogaea HOM05D007667 ORTHO05D008033 2.6e-26 124.0 410 32.7
TPR.G23684 Trifolium pratense HOM05D007667 ORTHO05D008033 1.3e-25 121.7 364 32.4
RhsimUnG0021200 Rhododendron simsii HOM05D007667 ORTHO05D008033 1.7e-25 121.3 427 30.9
arahy.Tifrunner.gnm1.ann1.2JVN0K Arachis hypogaea HOM05D007667 ORTHO05D008033 6.4e-25 119.4 410 32.2
Lalb_Chr14g0365211 Lupinus albus HOM05D007667 ORTHO05D008033 2.4e-24 117.5 398 31.9
Phvul.001G101500 Phaseolus vulgaris HOM05D007667 ORTHO05D008033 2.4e-24 117.5 403 31.8
TWI77G1010 Tripterygium wilfordii HOM05D007667 ORTHO05D008033 3.2e-24 117.1 393 30.3
Oeu041986.1 Olea europaea HOM05D007667 ORTHO05D008033 1.2e-23 115.2 387 30.5
AUR62020980 Chenopodium quinoa HOM05D007667 ORTHO05D008033 7.8e-23 112.5 155 54.2
Glyma.19G122200 Glycine max HOM05D007667 ORTHO05D008033 1.3e-22 111.7 405 31.9
SGA_v2.0_scaffold66G22329 Striga asiatica HOM05D007667 ORTHO05D008033 3.0e-22 110.5 379 31.4
MBI13_g29622_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 3.9e-22 110.2 422 32.0
Sc13g0000730 Simmondsia chinensis HOM05D007667 ORTHO05D008033 5.0e-22 109.8 499 29.1
VMungo1383G2866 Vigna mungo HOM05D007667 ORTHO05D008033 5.0e-22 109.8 404 31.7
Glyma.03G003800 Glycine max HOM05D007667 ORTHO05D008033 8.6e-22 109.0 403 31.3
vmacro07594 Vaccinium macrocarpon HOM05D007667 ORTHO05D008033 9.5e-21 105.5 438 30.6
Nn7g37184 Nelumbo nucifera HOM05D007667 ORTHO05D001109 1.6e-20 104.8 244 40.2
CSS0027019 Camellia sinensis var. sinensis HOM05D007667 ORTHO05D008033 2.1e-20 104.4 314 33.1
Migut.J01575 Erythranthe guttata HOM05D007667 ORTHO05D008033 2.1e-20 104.4 369 30.4
Prupe.7G023900 Prunus persica HOM05D007667 ORTHO05D008033 2.8e-20 104.0 275 37.5
Eucgr.K01702 Eucalyptus grandis HOM05D007667 ORTHO05D008033 6.8e-19 99.4 478 28.0
Aqoxy3G03841 Aquilegia oxysepala HOM05D007667 ORTHO05D008033 8.9e-19 99.0 412 28.2
Sed0012185 Sechium edule HOM05D007667 ORTHO05D008033 8.9e-19 99.0 419 29.4
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.0e-18 97.8 154 48.7
Haze_20347 Corylus avellana HOM05D007667 ORTHO05D008033 2.6e-18 97.4 338 33.1
Manes.08G067300 Manihot esculenta HOM05D007667 ORTHO05D008033 3.4e-18 97.1 304 31.6
CsaV3_4G028970 Cucumis sativus L. HOM05D007667 ORTHO05D008033 3.7e-17 93.6 430 28.4
PSO339G5815 Papaver somniferum HOM05D007667 ORTHO05D008033 1.9e-16 91.3 466 27.3
Lj1A1064T35 Lonicera japonica HOM05D007667 ORTHO05D008033 2.4e-16 90.9 228 35.5
Oeu060747.1 Olea europaea HOM05D007667 ORTHO05D008033 2.4e-16 90.9 403 29.0
ClCG04G005020 Citrullus lanatus HOM05D007667 ORTHO05D008033 3.2e-16 90.5 424 28.3
Ca_08329_v3 Cicer arietinum L. HOM05D007667 ORTHO05D008033 5.4e-16 89.7 247 36.8
Dinv02787 Davidia involucrata HOM05D007667 ORTHO05D008033 7.1e-16 89.4 258 35.3
arahy.Tifrunner.gnm1.ann1.8XR3F9 Arachis hypogaea HOM05D007667 ORTHO05D008033 1.6e-15 88.2 193 38.9
PSO384G0308 Papaver somniferum HOM05D007667 ORTHO05D008033 2.7e-15 87.4 468 28.6
arahy.Tifrunner.gnm1.ann1.EU10QV Arachis hypogaea HOM05D007667 ORTHO05D008033 3.5e-15 87.0 193 36.8
Thecc.05G130400 Theobroma cacao HOM05D007667 ORTHO05D008033 3.5e-15 87.0 371 28.3
Ciclev10012153m.g Citrus clementina HOM05D007667 ORTHO05D008033 6.0e-15 86.3 392 28.8
RcHm_v2.0_Chr3g0495051 Rosa chinensis HOM05D007667 ORTHO05D008033 6.0e-15 86.3 414 27.8
SalBow6G3731 Salvia bowleyana HOM05D007667 ORTHO05D008033 1.3e-14 85.1 467 26.1
COL.COLO4_22773 Corchorus olitorius HOM05D007667 ORTHO05D008033 1.7e-14 84.7 373 26.8
HPP92_012452 Vanilla planifolia HOM05D007667 ORTHO05D008033 2.3e-14 84.3 376 30.1
Atru.chr8.918 Acer truncatum HOM05D007667 ORTHO05D008033 3.0e-14 84.0 400 28.0
Duzib128G0300 Durio zibethinus HOM05D007667 ORTHO05D008033 1.1e-13 82.0 371 25.6
MSTRG.6277 Avicennia marina HOM05D007667 ORTHO05D008033 1.9e-13 81.3 404 28.0
ATR1096G118 Amborella trichopoda HOM05D007667 ORTHO05D008033 3.3e-13 80.5 228 35.1
Nitab4.5_0002201g0030 Nicotiana tabacum HOM05D007667 ORTHO05D008033 3.3e-13 80.5 367 26.7
Cfa010473 Carpinus fangiana HOM05D007667 ORTHO05D008033 3.1e-11 73.9 177 36.7
arahy.Tifrunner.gnm1.ann1.3W78Z9 Arachis hypogaea HOM05D007667 ORTHO05D008033 5.2e-11 73.2 166 36.7
ClCG10G016970 Citrullus lanatus HOM05D007667 ORTHO05D008033 7.6e-10 69.3 279 29.7
Cc06_g20370 Coffea canephora HOM05D007667 ORTHO05D008033 7.6e-10 69.3 409 25.9
Lalb_Chr22g0358171 Lupinus albus HOM05D007667 ORTHO05D008033 7.6e-10 69.3 223 31.4
arahy.Tifrunner.gnm1.ann1.8931ZB Arachis hypogaea HOM05D007667 ORTHO05D008033 8.4e-09 65.9 158 33.5
CDE02G4005 Ceratophyllum demersum HOM05D000558 ORTHO05D008033 1.9e-08 64.7 252 28.6
Dinv21555 Davidia involucrata HOM05D007667 ORTHO05D008033 1.9e-08 64.7 120 39.2
arahy.Tifrunner.gnm1.ann1.S7MPKE Arachis hypogaea HOM05D007667 ORTHO05D008033 4.1e-08 63.5 148 35.1
arahy.Tifrunner.gnm1.ann1.48UEJW Arachis hypogaea HOM05D007667 ORTHO05D008033 5.4e-08 63.2 91 45.1
Cpa.g.sc33.176 Carica papaya HOM05D007667 ORTHO05D008033 5.4e-08 63.2 190 34.7
DCAR_020622 Daucus carota HOM05D007667 ORTHO05D008033 1.2e-07 62.0 73 47.9
PGSC0003DMG400029088 Solanum tuberosum HOM05D007667 ORTHO05D008033 4.6e-07 60.1 363 24.2
Sed0023543 Sechium edule HOM05D007667 ORTHO05D008033 7.8e-07 59.3 412 26.0
CDE04G0047 Ceratophyllum demersum HOM05D007667 ORTHO05D008033 1.3e-06 58.5 150 34.7
MELO3C030720.2 Cucumis melo HOM05D007667 ORTHO05D008033 1.7e-06 58.2 277 28.9
CsaV3_3G039420 Cucumis sativus L. HOM05D007667 ORTHO05D008033 2.3e-06 57.8 406 27.3
Solyc08g067000.3 Solanum lycopersicum HOM05D007667 ORTHO05D008033 2.3e-06 57.8 392 24.0
SalBow6G3030 Salvia bowleyana HOM05D007667 ORTHO05D008033 8.7e-06 55.8 462 22.5


User provided reference genes

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