Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 2.3e-263 911.8 494 100.0
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 8.6e-165 584.3 473 66.0
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 1.0e-149 534.3 418 68.9
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 7.1e-143 511.5 384 70.3
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 3.5e-102 376.3 471 49.0
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 1.9e-100 370.5 471 49.5
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 4.8e-99 365.9 466 48.7
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 8.5e-96 355.1 452 48.7
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 1.1e-95 354.8 484 46.3
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.9e-95 354.0 477 45.5
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 2.7e-94 350.1 471 48.4
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 6.1e-94 349.0 477 45.3
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 1.8e-93 347.4 480 45.6
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 1.8e-93 347.4 468 46.8
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.3e-93 347.1 468 47.4
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 3.9e-93 346.3 450 46.2
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 1.1e-92 344.7 452 47.1
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 2.0e-92 344.0 470 46.8
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 2.0e-92 344.0 466 47.6
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 5.7e-92 342.4 466 44.8
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 5.7e-92 342.4 483 45.8
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 5.7e-92 342.4 468 46.8
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 1.3e-91 341.3 475 46.3
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 3.7e-91 339.7 457 45.7
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 3.7e-91 339.7 461 46.9
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 6.3e-91 339.0 464 45.5
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 6.3e-91 339.0 455 45.7
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 1.4e-90 337.8 472 46.4
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 1.8e-90 337.4 478 45.8
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 2.4e-90 337.0 462 45.2
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 2.4e-90 337.0 469 45.2
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 4.1e-90 336.3 455 48.1
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.2e-89 334.7 487 43.7
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 1.2e-89 334.7 478 45.4
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 5.9e-89 332.4 479 44.5
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 7.7e-89 332.0 465 45.6
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 1.3e-88 331.3 433 49.0
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 1.7e-88 330.9 470 45.5
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 2.2e-88 330.5 471 42.9
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 5.0e-88 329.3 457 45.1
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 1.4e-87 327.8 477 44.7
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 5.5e-87 325.9 466 44.8
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 1.2e-86 324.7 485 44.9
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 1.6e-86 324.3 456 46.1
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 2.1e-86 323.9 486 44.4
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 2.7e-86 323.6 454 44.5
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.7e-86 323.6 482 44.0
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 2.7e-86 323.6 477 45.1
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 3.6e-86 323.2 450 45.8
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 6.1e-86 322.4 503 43.3
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 6.1e-86 322.4 478 44.6
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 5.1e-85 319.3 477 43.0
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 1.1e-84 318.2 455 43.3
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 5.7e-84 315.8 469 44.3
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 7.4e-84 315.5 473 44.6
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 9.7e-84 315.1 450 44.9
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.2e-83 313.9 469 44.6
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 2.2e-83 313.9 463 44.9
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 2.8e-83 313.5 445 43.8
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 3.7e-83 313.2 475 42.9
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 1.1e-82 311.6 445 43.6
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 1.8e-82 310.8 454 43.6
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 5.3e-82 309.3 452 44.2
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 5.3e-82 309.3 468 42.9
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 5.3e-82 309.3 467 42.2
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 5.3e-82 309.3 467 44.5
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 9.1e-82 308.5 396 47.7
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 1.5e-81 307.8 475 43.2
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 3.5e-81 306.6 438 46.3
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 4.5e-81 306.2 372 47.3
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 5.9e-81 305.8 471 42.3
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 1.3e-80 304.7 457 43.3
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.2e-80 303.9 427 46.1
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 3.8e-80 303.1 425 44.5
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 3.8e-80 303.1 460 43.5
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 6.5e-80 302.4 468 42.7
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 6.5e-80 302.4 388 48.2
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 6.5e-80 302.4 431 45.9
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 8.5e-80 302.0 442 43.7
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 8.5e-80 302.0 442 43.7
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.9e-79 300.8 431 45.7
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 2.5e-79 300.4 447 42.5
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 3.2e-79 300.1 476 42.9
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 7.2e-79 298.9 463 43.6
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 9.4e-79 298.5 466 42.1
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 1.2e-78 298.1 420 45.2
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 1.2e-78 298.1 465 42.8
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 1.2e-78 298.1 459 42.3
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 3.6e-78 296.6 455 44.0
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 4.7e-78 296.2 448 42.2
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 6.1e-78 295.8 446 43.3
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 6.1e-78 295.8 446 43.3
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 6.1e-78 295.8 446 43.3
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 8.0e-78 295.4 463 41.3
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 1.8e-77 294.3 465 41.9
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 5.2e-77 292.7 401 46.9
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 2.0e-76 290.8 475 44.0
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 5.7e-76 289.3 351 48.7
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 1.7e-75 287.7 385 45.2
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 1.7e-75 287.7 385 45.2
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 1.7e-75 287.7 385 45.2
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 6.3e-75 285.8 371 46.9
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 6.3e-75 285.8 491 40.9
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 1.8e-74 284.3 368 46.2
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 5.3e-74 282.7 443 43.1
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 4.5e-73 279.6 367 45.0
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 5.9e-73 279.3 405 42.5
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.3e-72 278.1 367 44.1
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 3.8e-72 276.6 425 43.3
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 3.8e-72 276.6 368 45.1
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 5.0e-72 276.2 453 43.0
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 8.5e-72 275.4 447 42.5
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 2.5e-71 273.9 372 45.7
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 5.5e-71 272.7 369 44.7
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 1.0e-69 268.5 463 40.4
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 1.0e-69 268.5 363 44.4
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 1.2e-68 265.0 449 39.4
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 3.1e-66 256.9 303 47.9
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 4.1e-66 256.5 444 39.0
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 1.1e-63 248.4 416 38.7
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 3.2e-63 246.9 401 40.9
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 5.5e-63 246.1 362 41.7
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 9.4e-63 245.4 315 47.0
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 1.2e-62 245.0 410 39.8
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 2.1e-62 244.2 350 42.3
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 5.2e-61 239.6 450 39.1
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 4.4e-60 236.5 443 36.8
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 2.8e-59 233.8 369 42.0
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 1.1e-58 231.9 455 37.1
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 7.7e-57 225.7 317 43.5
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 5.0e-56 223.0 366 39.1
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 4.7e-54 216.5 280 48.6
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 4.0e-53 213.4 411 37.5
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 3.4e-52 210.3 402 37.6
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 1.3e-51 208.4 228 53.1
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 3.5e-49 200.3 332 39.5
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 2.8e-46 190.7 337 38.3
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 1.4e-45 188.3 477 32.1
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.3e-45 187.6 527 31.5
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.3e-45 187.6 527 31.5
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 2.2e-43 181.0 310 40.6
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 5.4e-34 149.8 179 46.4
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 4.6e-33 146.7 179 45.8
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 1.7e-32 144.8 148 60.8
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.5e-31 141.7 424 29.5
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.9e-31 141.4 334 33.5
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.9e-31 141.4 366 31.4
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.2e-30 138.7 498 27.9
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 2.0e-28 131.3 182 46.2
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.4e-28 130.6 291 34.4
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 9.9e-28 129.0 290 31.4
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 3.7e-27 127.1 312 30.8
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 7.8e-25 119.4 368 28.8
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 5.6e-23 113.2 584 24.8
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 4.7e-22 110.2 360 26.9
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.8e-19 100.5 228 30.7
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 8.7e-16 89.4 119 41.2
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 2.0e-12 78.2 121 37.2
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 4.4e-12 77.0 117 37.6
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 5.8e-12 76.6 57 70.2
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 3.8e-11 73.9 82 46.3


User provided reference genes

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