Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2671.7 1349 100.0
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2523.4 1384 91.1
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2522.3 1384 91.0
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2516.1 1384 90.5
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2447.5 1385 88.5
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2442.5 1385 88.2
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2442.5 1385 88.2
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2437.1 1400 87.4
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2433.7 1384 87.1
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2432.9 1385 87.9
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2432.5 1385 87.4
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2430.6 1385 87.7
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2430.2 1379 88.2
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2424.8 1384 87.4
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2422.9 1385 87.4
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2422.5 1385 86.8
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2422.1 1384 86.8
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2420.6 1382 87.2
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2419.4 1386 87.2
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2419.4 1384 87.4
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2419.4 1385 87.3
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2418.7 1384 87.1
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2417.1 1385 87.5
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2415.6 1388 87.0
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2414.4 1388 87.1
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2414.4 1385 87.0
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2410.6 1385 87.1
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2410.2 1384 87.2
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2410.2 1384 86.4
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2409.4 1385 86.7
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2409.0 1384 86.7
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2408.3 1384 86.8
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2407.5 1384 86.7
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2407.5 1384 87.2
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2407.5 1384 87.2
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2405.9 1387 87.2
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2404.0 1385 87.4
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2402.9 1385 86.7
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2402.1 1385 86.7
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2401.3 1385 86.8
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2400.9 1384 85.9
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2400.2 1385 86.5
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2399.4 1385 86.4
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2397.1 1385 86.4
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2393.2 1384 86.3
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2392.1 1384 86.5
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2391.3 1385 86.1
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2390.1 1383 86.0
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2390.1 1398 85.2
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2386.7 1384 85.7
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2384.0 1384 85.5
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2383.6 1379 86.9
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2382.8 1384 85.7
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2382.4 1385 85.5
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2380.9 1385 85.5
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2380.9 1385 86.0
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2379.7 1385 85.4
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2377.1 1384 85.8
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2376.3 1384 85.4
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2375.9 1395 84.9
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2375.5 1384 85.4
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2375.1 1384 85.2
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2374.0 1385 85.4
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2372.0 1384 85.3
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2372.0 1386 84.8
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2371.3 1384 85.4
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2370.9 1384 85.2
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2370.9 1384 85.2
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2369.0 1379 85.7
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2368.2 1385 85.1
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2365.9 1411 83.8
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2364.3 1387 84.9
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2360.5 1379 84.9
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2360.5 1380 85.9
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2356.3 1359 85.9
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2350.5 1330 87.5
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2347.8 1385 84.7
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2346.6 1385 84.7
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2343.9 1446 81.2
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2343.2 1354 86.0
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2340.1 1389 84.0
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2333.1 1385 84.0
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2332.0 1389 83.9
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2328.9 1389 83.9
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2321.6 1389 83.4
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2320.8 1386 83.5
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2317.0 1386 83.3
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2317.0 1386 83.3
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2310.0 1385 83.1
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2308.9 1385 83.1
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2307.3 1385 83.0
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2292.3 1389 83.2
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2270.0 1385 82.7
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2266.5 1386 82.8
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2256.1 1400 81.1
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2255.7 1380 82.6
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2243.4 1411 81.2
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2235.7 1236 90.5
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2210.3 1239 89.0
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2208.3 1238 88.2
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2195.2 1328 81.3
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2166.0 1339 81.5
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2124.4 1336 77.5
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2123.2 1332 79.1
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2101.6 1343 77.3
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2098.9 1336 77.6
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2098.9 1336 77.6
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2081.2 1350 75.4
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1984.5 1117 87.8
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1962.2 1105 87.8
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1895.6 1377 72.8
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1824.3 1402 70.0
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1818.1 1332 68.0
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1788.9 1334 67.0
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1673.7 913 91.7
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1617.8 916 87.2
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1568.1 898 87.0
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1424.8 808 87.0
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1414.8 809 86.4
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1105.1 690 81.4
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1090.9 675 80.6
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 5.2e-297 1025.0 669 78.3
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 2.4e-294 1016.1 571 87.6
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 5.8e-256 888.6 592 77.2
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 5.6e-251 872.1 1195 43.1
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 1.3e-228 797.7 466 85.4
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 1.5e-224 784.3 466 83.9
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 1.1e-222 778.1 467 83.7
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 6.5e-215 752.3 468 81.0
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 8.5e-199 698.7 398 86.7
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 2.3e-172 610.9 1397 31.8
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 1.6e-157 561.6 1472 29.8
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 4.2e-105 387.5 1267 27.5
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 1.1e-68 266.5 175 77.7
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 7.2e-65 253.8 147 83.0
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 1.3e-58 233.0 120 92.5
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 8.1e-40 170.6 174 55.7
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 1.9e-36 159.5 88 90.9
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 4.4e-30 138.3 138 50.7
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 1.3e-24 120.2 92 66.3
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 1.8e-23 116.3 85 68.2
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 2.8e-16 92.4 54 85.2


User provided reference genes

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