Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g075720 Amaranthus hybridus HOM05D003549 ORTHO05D004223 4.5e-20 100.9 77 100.0
AUR62008230 Chenopodium quinoa HOM05D003549 ORTHO05D004223 4.2e-18 94.4 77 98.7
AUR62037088 Chenopodium quinoa HOM05D003549 ORTHO05D004223 2.7e-17 91.7 77 96.1
AUR62036487 Chenopodium quinoa HOM05D003549 ORTHO05D004223 6.1e-17 90.5 77 93.5
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 6.7e-16 87.0 77 76.6
EL10Ac5g10777 Beta vulgaris HOM05D003549 ORTHO05D004223 3.3e-15 84.7 77 90.9
Hund12012 Selenicereus undatus HOM05D003549 ORTHO05D004223 2.8e-14 81.6 77 85.7
Sc12g0005420 Simmondsia chinensis HOM05D003549 ORTHO05D004223 2.0e-12 75.5 80 76.2
Sc04g0001880 Simmondsia chinensis HOM05D003549 ORTHO05D004223 4.5e-12 74.3 78 70.5
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 5.9e-12 73.9 75 66.7
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 5.9e-12 73.9 75 64.0
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 2.2e-11 72.0 75 68.0
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 2.2e-11 72.0 75 61.3
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 2.2e-11 72.0 75 61.3
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 3.8e-11 71.2 71 63.4
Lsat_1_v5_gn_1_26640 Lactuca sativa HOM05D000122 ORTHO05D004223 1.4e-10 69.3 76 77.6
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 1.4e-10 69.3 77 58.4
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 3.2e-10 68.2 77 72.7
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 4.2e-10 67.8 77 67.5
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 5.5e-10 67.4 75 53.3
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 7.2e-10 67.0 77 66.2
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 7.2e-10 67.0 75 72.0
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 7.2e-10 67.0 75 65.3
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 7.2e-10 67.0 75 65.3
ECA246G5096 Erigeron canadensis HOM05D003549 ORTHO05D004223 1.6e-09 65.9 75 66.7
PGSC0003DMG400027096 Solanum tuberosum HOM05D003549 ORTHO05D004223 1.6e-09 65.9 75 65.3
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 2.1e-09 65.5 70 61.4
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 2.1e-09 65.5 68 61.8
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 2.1e-09 65.5 77 61.0
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 2.1e-09 65.5 70 67.1
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 2.7e-09 65.1 77 66.2
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 2.7e-09 65.1 75 64.0
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.7e-09 65.1 75 64.0
Gohir.D12G274100 Gossypium hirsutum HOM05D003549 ORTHO05D004223 2.7e-09 65.1 71 81.7
Gorai.008G294500 Gossypium raimondii HOM05D003549 ORTHO05D004223 2.7e-09 65.1 71 81.7
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 2.7e-09 65.1 75 57.3
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 2.7e-09 65.1 75 61.3
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 2.7e-09 65.1 77 54.5
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 3.6e-09 64.7 71 62.0
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 3.6e-09 64.7 75 62.7
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 4.6e-09 64.3 72 56.9
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 4.6e-09 64.3 76 63.2
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 4.6e-09 64.3 75 57.3
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 6.1e-09 63.9 75 61.3
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 6.1e-09 63.9 75 61.3
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 6.1e-09 63.9 75 61.3
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 6.1e-09 63.9 65 64.6
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 6.1e-09 63.9 71 63.4
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 6.1e-09 63.9 68 60.3
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 7.9e-09 63.5 68 61.8
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 7.9e-09 63.5 64 70.3
Aqoxy3G02997 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 1.0e-08 63.2 76 69.7
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 1.0e-08 63.2 74 58.1
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 1.0e-08 63.2 77 55.8
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 1.0e-08 63.2 71 64.8
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 1.0e-08 63.2 75 60.0
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 1.0e-08 63.2 75 56.0
TPR.G37556 Trifolium pratense HOM05D003549 ORTHO05D004223 1.0e-08 63.2 65 81.5
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 1.4e-08 62.8 64 65.6
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 1.4e-08 62.8 70 64.3
PGR083G2145 Punica granatum HOM05D003549 ORTHO05D004223 1.4e-08 62.8 70 77.1
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 1.8e-08 62.4 64 68.8
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 1.8e-08 62.4 70 68.6
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 1.8e-08 62.4 64 67.2
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 1.8e-08 62.4 64 67.2
HanXRQChr02g0037231 Helianthus annuus HOM05D003549 ORTHO05D004223 1.8e-08 62.4 75 72.0
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 1.8e-08 62.4 64 64.1
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 1.8e-08 62.4 64 64.1
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 2.3e-08 62.0 74 54.1
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 2.3e-08 62.0 74 56.8
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 2.3e-08 62.0 64 65.6
SalBow5G5409 Salvia bowleyana HOM05D003549 ORTHO05D004223 2.3e-08 62.0 74 63.5
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 2.3e-08 62.0 68 55.9
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 2.3e-08 62.0 68 55.9
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 2.3e-08 62.0 64 53.1
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 3.0e-08 61.6 68 63.2
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 3.0e-08 61.6 70 52.9
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 3.0e-08 61.6 68 63.2
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 3.0e-08 61.6 74 59.5
Zm00001eb332940 Zea mays HOM05D003549 ORTHO05D004223 3.0e-08 61.6 67 59.7
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 3.9e-08 61.2 68 63.2
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 3.9e-08 61.2 64 65.6
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 3.9e-08 61.2 71 63.4
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 3.9e-08 61.2 71 63.4
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 5.1e-08 60.8 71 67.6
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 6.7e-08 60.5 62 69.4
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 6.7e-08 60.5 77 63.6
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 6.7e-08 60.5 70 50.0
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 6.7e-08 60.5 69 63.8
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 6.7e-08 60.5 70 61.4
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 8.8e-08 60.1 64 60.9
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 8.8e-08 60.1 62 66.1
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 1.5e-07 59.3 64 67.2
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.0e-07 58.9 67 61.2
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.0e-07 58.9 67 61.2
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.0e-07 58.9 67 61.2
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.0e-07 58.9 67 61.2
unitig_749.g13471 Utricularia gibba HOM05D003549 ORTHO05D004223 2.0e-07 58.9 77 70.1
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 2.6e-07 58.5 65 66.2
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 2.6e-07 58.5 70 65.7
Lalb_Chr11g0071151 Lupinus albus HOM05D003549 ORTHO05D004223 3.3e-07 58.2 65 80.0
Rhsim08G0170600 Rhododendron simsii HOM05D003549 ORTHO05D004223 3.3e-07 58.2 72 61.1
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 4.4e-07 57.8 71 63.4
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 4.4e-07 57.8 71 63.4
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 4.4e-07 57.8 68 64.7
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 4.4e-07 57.8 67 61.2
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 4.4e-07 57.8 67 61.2
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 4.4e-07 57.8 68 51.5
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 4.4e-07 57.8 70 67.1
ECA247G2394 Erigeron canadensis HOM05D003549 ORTHO05D004223 5.7e-07 57.4 64 65.6
Os01g0273000 Oryza sativa ssp. japonica HOM05D003549 ORTHO05D004223 5.7e-07 57.4 75 54.7
RcHm_v2.0_Chr2g0170951 Rosa chinensis HOM05D003549 ORTHO05D004223 5.7e-07 57.4 67 59.7
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 7.4e-07 57.0 68 58.8
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 7.4e-07 57.0 70 55.7
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 7.4e-07 57.0 70 67.1
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 7.4e-07 57.0 70 67.1
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 7.4e-07 57.0 70 67.1
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 7.4e-07 57.0 71 62.0
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 7.4e-07 57.0 69 63.8
Peaxi162Scf00535g00046 Petunia axillaris HOM05D003549 ORTHO05D004223 7.4e-07 57.0 75 49.3
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 7.4e-07 57.0 63 61.9
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 7.4e-07 57.0 68 63.2
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 7.4e-07 57.0 64 59.4
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 1.7e-06 55.8 64 56.2
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.7e-06 55.8 68 50.0
AUR62030984 Chenopodium quinoa HOM05D003549 ORTHO05D137584 4.8e-06 54.3 32 93.8
DCAR_021565 Daucus carota HOM05D003549 ORTHO05D004223 4.8e-06 54.3 78 55.1
Gohir.A12G273400 Gossypium hirsutum HOM05D003549 ORTHO05D004223 4.8e-06 54.3 75 76.0
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 4.8e-06 54.3 78 60.3
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 6.3e-06 53.9 65 58.5
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 6.3e-06 53.9 65 58.5
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 6.3e-06 53.9 65 58.5
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 6.3e-06 53.9 65 58.5
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 6.3e-06 53.9 67 47.8
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 8.2e-06 53.5 68 60.3


User provided reference genes

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