Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 7.9e-233 810.1 408 100.0
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 8.9e-184 647.1 408 79.7
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 6.4e-182 641.0 409 78.0
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 7.3e-170 600.9 409 72.1
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 2.1e-169 599.4 409 71.9
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 4.7e-169 598.2 409 71.1
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 2.4e-168 595.9 411 70.3
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 4.0e-168 595.1 407 70.8
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 4.0e-168 595.1 409 70.4
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 5.2e-168 594.7 409 70.4
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 6.8e-168 594.3 408 70.8
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 2.9e-166 589.0 409 70.9
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 4.9e-166 588.2 409 69.9
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 4.9e-166 588.2 409 70.2
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 1.4e-165 586.6 409 69.9
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.4e-165 586.6 409 69.9
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 1.9e-165 586.3 409 69.4
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 2.4e-165 585.9 409 71.1
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 5.4e-165 584.7 409 69.7
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 7.1e-165 584.3 408 71.1
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 9.2e-165 583.9 408 71.1
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 9.2e-165 583.9 408 71.1
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 7.8e-164 580.9 403 70.7
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 1.0e-163 580.5 409 70.4
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 1.3e-163 580.1 409 71.1
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 1.3e-163 580.1 405 70.1
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 1.7e-163 579.7 409 69.7
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 3.0e-163 578.9 409 69.2
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 3.0e-163 578.9 405 70.1
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 3.9e-163 578.6 409 72.4
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 1.1e-162 577.0 410 70.2
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.1e-162 577.0 403 70.5
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 1.1e-162 577.0 409 71.1
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 1.5e-162 576.6 407 69.3
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 2.5e-162 575.9 405 69.4
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 4.3e-162 575.1 410 69.5
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 5.6e-162 574.7 403 70.2
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 7.3e-162 574.3 410 70.7
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 7.3e-162 574.3 409 69.2
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 2.8e-161 572.4 412 69.9
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 4.7e-161 571.6 409 68.7
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 4.7e-161 571.6 409 68.7
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 8.1e-161 570.9 399 69.4
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 8.1e-161 570.9 409 68.9
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 1.4e-160 570.1 409 69.2
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.8e-160 569.7 409 69.2
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 3.1e-160 568.9 399 69.2
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 4.0e-160 568.5 409 68.9
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 5.3e-160 568.2 409 69.2
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 6.9e-160 567.8 401 68.8
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 6.9e-160 567.8 409 67.7
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 1.5e-159 566.6 410 70.5
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 2.6e-159 565.8 408 68.9
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 3.4e-159 565.5 410 69.0
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 4.4e-159 565.1 410 67.1
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 4.4e-159 565.1 409 68.9
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 7.6e-159 564.3 403 68.5
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 6.4e-158 561.2 406 67.7
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 1.4e-157 560.1 403 70.0
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 2.4e-157 559.3 403 68.2
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 2.4e-157 559.3 410 66.8
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 5.4e-157 558.1 409 67.0
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 9.3e-157 557.4 403 69.0
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.6e-156 556.6 408 67.9
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 1.0e-155 553.9 406 66.3
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 1.3e-155 553.5 412 66.5
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 1.3e-155 553.5 412 66.5
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 1.3e-155 553.5 412 66.5
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 8.7e-155 550.8 412 66.0
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 8.7e-155 550.8 403 66.7
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 1.5e-154 550.1 409 66.7
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 1.5e-154 550.1 412 66.0
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 1.5e-154 550.1 412 66.0
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 1.9e-154 549.7 403 67.2
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 2.5e-154 549.3 412 65.8
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 3.3e-154 548.9 410 66.6
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 5.6e-154 548.1 403 66.3
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 7.3e-154 547.7 409 65.0
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 7.3e-154 547.7 409 66.7
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 9.6e-154 547.4 403 65.8
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 1.6e-153 546.6 409 67.2
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 2.1e-153 546.2 407 65.6
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 3.6e-153 545.4 409 65.3
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 1.1e-152 543.9 412 65.8
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 3.1e-152 542.3 407 67.1
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 4.0e-152 542.0 402 66.7
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 9.0e-152 540.8 410 65.9
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 9.0e-152 540.8 403 66.0
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 9.0e-152 540.8 402 66.7
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 5.8e-151 538.1 409 65.5
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 7.6e-151 537.7 407 65.6
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 9.9e-151 537.3 403 66.3
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 1.3e-150 537.0 410 65.6
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 1.7e-150 536.6 441 62.4
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 2.2e-150 536.2 403 66.0
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 3.8e-150 535.4 402 66.4
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 4.9e-150 535.0 406 64.8
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 6.4e-150 534.6 403 66.3
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 8.4e-150 534.3 406 65.0
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 1.1e-149 533.9 409 64.1
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 1.9e-149 533.1 409 63.8
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 3.0e-147 525.8 409 63.3
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 6.7e-147 524.6 314 82.8
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 8.7e-147 524.2 405 64.0
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 1.9e-146 523.1 432 61.3
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 3.3e-146 522.3 400 64.2
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 6.2e-145 518.1 403 65.5
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 1.8e-144 516.5 403 63.5
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 7.1e-141 504.6 407 61.2
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 1.2e-140 503.8 371 67.4
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 2.7e-140 502.7 408 61.3
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 2.3e-139 499.6 361 67.9
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 3.0e-139 499.2 495 54.3
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 4.3e-138 495.4 406 60.6
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 1.3e-137 493.8 409 62.3
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 3.4e-135 485.7 406 59.1
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 1.3e-134 483.8 403 58.8
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 7.9e-132 474.6 353 67.4
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 7.9e-132 474.6 403 58.8
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 1.0e-131 474.2 314 73.2
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 9.0e-128 461.1 416 55.8
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 3.3e-122 442.6 403 57.3
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 1.6e-116 423.7 410 55.1
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 1.1e-109 401.0 276 72.1
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 7.7e-103 378.3 292 64.7
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 2.2e-102 376.7 361 55.4
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 3.8e-102 375.9 313 58.5
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 1.5e-101 374.0 414 46.6
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 2.3e-99 366.7 407 47.4
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 2.5e-93 346.7 268 65.7
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 3.2e-93 346.3 416 44.2
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.2e-90 337.8 417 49.4
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 7.2e-85 318.5 409 43.5
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 9.5e-77 291.6 442 39.6
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 3.5e-71 273.1 254 55.1
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 5.4e-64 249.2 174 69.5
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 6.6e-62 242.3 185 63.8
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 4.3e-61 239.6 161 74.5
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 3.6e-60 236.5 168 67.9
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 4.9e-57 226.1 214 53.7
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 3.5e-55 219.9 355 38.3
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 8.6e-54 215.3 158 62.7
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 5.2e-51 206.1 135 74.1
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 5.4e-48 196.1 148 62.8
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.1e-47 194.1 189 54.5
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 1.3e-46 191.4 112 80.4
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 3.2e-32 143.7 93 74.2
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 4.8e-28 129.8 97 67.0
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 1.9e-21 107.8 97 56.7
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 2.6e-18 97.4 211 33.2
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 3.4e-18 97.1 70 64.3
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 7.9e-15 85.9 84 56.0
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 1.0e-14 85.5 57 70.2


User provided reference genes

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