Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g075530 Amaranthus hybridus HOM05D001705 ORTHO05D008928 7.8e-52 206.8 103 100.0
EL10Ac8g18938 Beta vulgaris HOM05D001705 ORTHO05D008928 9.5e-42 173.3 103 83.5
AUR62025342 Chenopodium quinoa HOM05D001705 ORTHO05D008928 5.2e-40 167.5 98 86.7
AUR62028345 Chenopodium quinoa HOM05D001705 ORTHO05D008928 2.0e-39 165.6 98 85.7
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 1.5e-34 149.4 104 70.2
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 4.3e-34 147.9 104 69.2
Actinidia29374 Actinidia chinensis HOM05D001705 ORTHO05D008928 9.5e-34 146.7 99 69.7
Dinv22114 Davidia involucrata HOM05D001705 ORTHO05D008928 1.1e-32 143.3 98 69.4
Hma1.2p1_0238F.1_g099670 Hydrangea macrophylla HOM05D001705 ORTHO05D008928 1.4e-32 142.9 100 69.0
Hma1.2p1_2213F.1_g317220 Hydrangea macrophylla HOM05D001705 ORTHO05D008928 2.3e-32 142.1 102 66.7
Dinv37409 Davidia involucrata HOM05D001705 ORTHO05D008928 3.1e-32 141.7 103 67.0
TAR628G0577 Trochodendron aralioides HOM05D001705 ORTHO05D008928 3.1e-32 141.7 96 69.8
VMungo1080G1609 Vigna mungo HOM05D001705 ORTHO05D008928 6.8e-32 140.6 103 66.0
Rhsim12G0002800 Rhododendron simsii HOM05D001705 ORTHO05D008928 1.5e-31 139.4 87 75.9
TAR376G0455 Trochodendron aralioides HOM05D001705 ORTHO05D008928 1.5e-31 139.4 100 70.0
Potri.019G070801 Populus trichocarpa HOM05D001705 ORTHO05D008928 2.0e-31 139.0 103 67.0
Lj3g0021440 Lotus japonicus HOM05D001705 ORTHO05D008928 3.4e-31 138.3 92 70.7
Phvul.L001622 Phaseolus vulgaris HOM05D001705 ORTHO05D008928 3.4e-31 138.3 99 66.7
Prupe.8G006600 Prunus persica HOM05D001705 ORTHO05D008928 3.4e-31 138.3 86 74.4
HanXRQChr01g0026311 Helianthus annuus HOM05D001705 ORTHO05D008928 7.5e-31 137.1 82 78.0
RcHm_v2.0_Chr6g0251131 Rosa chinensis HOM05D001705 ORTHO05D008928 7.5e-31 137.1 84 73.8
vmacro00942 Vaccinium macrocarpon HOM05D001705 ORTHO05D008928 9.9e-31 136.7 100 66.0
FvH4_2g00750 Fragaria vesca HOM05D001705 ORTHO05D008928 1.7e-30 136.0 86 70.9
FAN24G2035 Fragaria x ananassa HOM05D001705 ORTHO05D008928 1.7e-30 136.0 86 70.9
FAN27G0168 Fragaria x ananassa HOM05D001705 ORTHO05D008928 1.7e-30 136.0 86 70.9
Lalb_Chr15g0079721 Lupinus albus HOM05D001705 ORTHO05D008928 2.2e-30 135.6 86 73.3
MBI06_g14319_MAGBIO Magnolia biondii HOM05D001705 ORTHO05D008928 2.2e-30 135.6 99 67.7
MD05G1003200 Malus domestica HOM05D001705 ORTHO05D008928 2.2e-30 135.6 86 73.3
CiPaw.03G013900 Carya illinoinensis HOM05D001705 ORTHO05D008928 4.9e-30 134.4 94 68.1
Sabra19G0082700 Salix brachista HOM05D001705 ORTHO05D008928 4.9e-30 134.4 103 64.1
Thecc.08G179500 Theobroma cacao HOM05D001705 ORTHO05D008928 4.9e-30 134.4 84 72.6
Ciclev10022992m.g Citrus clementina HOM05D001705 ORTHO05D008928 6.4e-30 134.0 106 62.3
Glyma.06G321300 Glycine max HOM05D001705 ORTHO05D008928 6.4e-30 134.0 86 73.3
Cfa008073 Carpinus fangiana HOM05D001705 ORTHO05D008928 1.1e-29 133.3 91 70.3
Haze_13961 Corylus avellana HOM05D001705 ORTHO05D008953 1.1e-29 133.3 90 70.0
Peaxi162Scf00078g00076 Petunia axillaris HOM05D001705 ORTHO05D008928 1.1e-29 133.3 102 65.7
Lj3g0024983 Lotus japonicus HOM05D001705 ORTHO05D008928 1.4e-29 132.9 87 71.3
Medtr3g008540 Medicago truncatula HOM05D001705 ORTHO05D008928 1.4e-29 132.9 86 70.9
Aqoxy1G00582 Aquilegia oxysepala HOM05D001705 ORTHO05D008928 1.9e-29 132.5 98 67.3
BcaB05g23921 Brassica carinata HOM05D001705 ORTHO05D008928 2.4e-29 132.1 98 64.3
ECA248G1877 Erigeron canadensis HOM05D001705 ORTHO05D008928 3.2e-29 131.7 86 73.3
QL07p031108 Quercus lobata HOM05D001705 ORTHO05D008928 3.2e-29 131.7 95 67.4
GSVIVG01036284001 Vitis vinifera HOM05D001705 ORTHO05D008928 3.2e-29 131.7 100 66.0
Lsat_1_v5_gn_1_56320 Lactuca sativa HOM05D001705 ORTHO05D008928 4.1e-29 131.3 102 61.8
MD10G1004200 Malus domestica HOM05D001705 ORTHO05D008928 4.1e-29 131.3 86 70.9
CiPaw.10G112700 Carya illinoinensis HOM05D001705 ORTHO05D008928 7.1e-29 130.6 100 65.0
Manes.03G079500 Manihot esculenta HOM05D001705 ORTHO05D008928 7.1e-29 130.6 84 70.2
SalBow7G0612 Salvia bowleyana HOM05D001705 ORTHO05D008928 7.1e-29 130.6 100 61.0
BcaB04g18852 Brassica carinata HOM05D001705 ORTHO05D008928 9.2e-29 130.2 88 67.0
CANSAT21G1408 Cannabis sativa HOM05D001705 ORTHO05D008928 9.2e-29 130.2 95 64.2
CANSAT21G2117 Cannabis sativa HOM05D001705 ORTHO05D008928 9.2e-29 130.2 95 64.2
arahy.Tifrunner.gnm1.ann1.X4BGNP Arachis hypogaea HOM05D001705 ORTHO05D008928 1.2e-28 129.8 90 64.4
Migut.C01384 Erythranthe guttata HOM05D001705 ORTHO05D008928 1.2e-28 129.8 87 69.0
QL07p047839 Quercus lobata HOM05D001705 ORTHO05D008928 1.2e-28 129.8 95 67.4
Nn6g34378 Nelumbo nucifera HOM05D001705 ORTHO05D008928 1.6e-28 129.4 91 68.1
TWI81G0898 Tripterygium wilfordii HOM05D001705 ORTHO05D008928 1.6e-28 129.4 86 70.9
DCAR_003512 Daucus carota HOM05D001705 ORTHO05D008928 2.7e-28 128.6 86 68.6
Duzib106G1039 Durio zibethinus HOM05D001705 ORTHO05D008928 2.7e-28 128.6 91 64.8
Eucgr.F02944 Eucalyptus grandis HOM05D001705 ORTHO05D008928 2.7e-28 128.6 94 67.0
Sp6g07460 Schrenkiella parvula HOM05D001705 ORTHO05D008928 2.7e-28 128.6 88 67.0
Sc18g0002990 Simmondsia chinensis HOM05D001705 ORTHO05D008928 2.7e-28 128.6 87 73.6
Psat5g227400 Pisum sativum HOM05D001705 ORTHO05D008928 3.5e-28 128.3 86 68.6
ClCG08G000770 Citrullus lanatus HOM05D001705 ORTHO05D008928 4.6e-28 127.9 89 68.5
THA.LOC104815816 Tarenaya hassleriana HOM05D001705 ORTHO05D008928 4.6e-28 127.9 103 57.3
BcaC04g21016 Brassica carinata HOM05D001705 ORTHO05D008928 6.0e-28 127.5 88 68.2
C09p36640 Brassica napus HOM05D001705 ORTHO05D008928 6.0e-28 127.5 88 68.2
BolC9t56496H Brassica oleracea HOM05D001705 ORTHO05D008928 6.0e-28 127.5 88 68.2
PGSC0003DMG400010036 Solanum tuberosum HOM05D001705 ORTHO05D008928 6.0e-28 127.5 102 62.7
Aa31LG9G11900 Aethionema arabicum HOM05D001705 ORTHO05D008928 7.8e-28 127.1 103 58.3
COL.COLO4_25141 Corchorus olitorius HOM05D001705 ORTHO05D008928 7.8e-28 127.1 84 69.0
Gohir.A06G168000 Gossypium hirsutum HOM05D001705 ORTHO05D008928 7.8e-28 127.1 86 65.1
Atru.chr3.1320 Acer truncatum HOM05D001705 ORTHO05D008928 1.0e-27 126.7 102 61.8
Thhalv10029346m.g Eutrema salsugineum HOM05D001705 ORTHO05D008928 1.7e-27 125.9 88 65.9
Gohir.D06G175400 Gossypium hirsutum HOM05D001705 ORTHO05D008928 1.7e-27 125.9 84 66.7
Gorai.010G205800 Gossypium raimondii HOM05D001705 ORTHO05D008928 1.7e-27 125.9 84 66.7
Sopen02g034700 Solanum pennellii HOM05D001705 ORTHO05D008928 1.7e-27 125.9 90 67.8
AT4G10100 Arabidopsis thaliana HOM05D001705 ORTHO05D008928 2.3e-27 125.6 88 65.9
A09p28840 Brassica napus HOM05D001705 ORTHO05D008928 3.9e-27 124.8 88 65.9
BraA09t38446Z Brassica rapa HOM05D001705 ORTHO05D008928 3.9e-27 124.8 88 65.9
PGR044G0661 Punica granatum HOM05D001705 ORTHO05D008928 3.9e-27 124.8 98 62.2
unitig_8.g4896 Utricularia gibba HOM05D001705 ORTHO05D008928 3.9e-27 124.8 97 62.9
Nitab4.5_0007940g0020 Nicotiana tabacum HOM05D001705 ORTHO05D008928 5.1e-27 124.4 90 66.7
CAN.G836.15 Capsicum annuum HOM05D001705 ORTHO05D008928 8.6e-27 123.6 87 65.5
CDE11G0405 Ceratophyllum demersum HOM05D001705 ORTHO05D008928 8.6e-27 123.6 98 59.2
Nitab4.5_0003432g0050 Nicotiana tabacum HOM05D001705 ORTHO05D008928 8.6e-27 123.6 100 61.0
Cpa.g.sc21.88 Carica papaya HOM05D001705 ORTHO05D008928 1.1e-26 123.2 92 59.8
MSTRG.5080 Avicennia marina HOM05D001705 ORTHO05D008928 1.5e-26 122.9 81 69.1
BcaB01g01450 Brassica carinata HOM05D001705 ORTHO05D008928 1.5e-26 122.9 88 63.6
Sed0017068 Sechium edule HOM05D001705 ORTHO05D008928 1.9e-26 122.5 89 65.2
AL6G43910 Arabidopsis lyrata HOM05D001705 ORTHO05D008928 3.3e-26 121.7 88 63.6
Carub.0006s2867 Capsella rubella HOM05D001705 ORTHO05D008928 4.3e-26 121.3 82 65.9
MELO3C022174.2 Cucumis melo HOM05D001705 ORTHO05D008928 9.5e-26 120.2 90 64.4
CsaV3_5G039950 Cucumis sativus L. HOM05D001705 ORTHO05D008928 1.6e-25 119.4 91 62.6
CARHR261140 Cardamine hirsuta HOM05D001705 ORTHO05D008928 4.7e-25 117.9 87 62.1
VMungo0464G0569 Vigna mungo HOM05D001705 ORTHO05D008928 4.7e-25 117.9 88 63.6
PSO339G0564 Papaver somniferum HOM05D001705 ORTHO05D008928 4.0e-24 114.8 96 62.5
Zm00001eb244080 Zea mays HOM05D001705 ORTHO05D008928 3.4e-23 111.7 80 67.5
Zm00001eb182270 Zea mays HOM05D001705 ORTHO05D008928 5.8e-23 110.9 80 66.2
ATR0757G218 Amborella trichopoda HOM05D001705 ORTHO05D008928 1.3e-22 109.8 105 55.2
HPP92_013556 Vanilla planifolia HOM05D001705 ORTHO05D008928 2.2e-22 109.0 84 63.1
Os02g0558300 Oryza sativa ssp. japonica HOM05D001705 ORTHO05D008928 6.4e-22 107.5 77 68.8
SEGI_06051 Sequoiadendron giganteum HOM05D001705 ORTHO05D008928 9.2e-21 103.6 87 54.0
SMO178G0001 Selaginella moellendorffii HOM05D001705 ORTHO05D008928 1.2e-20 103.2 97 46.4
SMO119G0349 Selaginella moellendorffii HOM05D001705 ORTHO05D008928 2.7e-20 102.1 97 45.4
ATR1089G014 Amborella trichopoda HOM05D001705 ORTHO05D008928 5.6e-18 94.4 82 54.9
Solyc02g090010.3 Solanum lycopersicum HOM05D001705 ORTHO05D008928 5.6e-18 94.4 63 69.8
SHI16716 Sapria himalayana HOM05D001705 ORTHO05D008928 1.8e-16 89.4 82 51.2
Pp3c24_14090 Physcomitrium patens HOM05D001705 ORTHO05D008928 2.4e-16 89.0 89 42.7
BolC2t10291H Brassica oleracea HOM05D001705 ORTHO05D008928 7.6e-15 84.0 75 52.0
Mapoly0053s0105 Marchantia polymorpha HOM05D001705 ORTHO05D008928 1.7e-14 82.8 95 46.3
Cre08.g382545 Chlamydomonas reinhardtii HOM05D001705 ORTHO05D008928 8.7e-11 70.5 84 39.3
CBR_g41370 Chara braunii HOM05D001705 ORTHO05D008928 1.6e-09 66.2 82 36.6
MCO06G125 Micromonas commoda HOM05D001705 ORTHO05D008928 1.4e-08 63.2 85 41.2
CBR_g5690 Chara braunii HOM05D001705 ORTHO05D008928 3.4e-07 58.5 80 35.0
PRCOL_00000441 Prasinoderma coloniale HOM05D000415 ORTHO05D002017 5.8e-07 57.8 92 40.2


User provided reference genes

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