Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 5.1e-42 174.1 95 100.0
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 1.5e-20 102.8 95 62.1
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 4.7e-19 97.8 95 62.1
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 2.3e-18 95.5 98 57.1
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 4.0e-18 94.7 74 64.9
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 5.2e-18 94.4 73 65.8
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 1.2e-17 93.2 73 64.4
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 1.1e-15 86.7 60 70.0
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 5.4e-15 84.3 59 67.8
Prupe.7G004500 Prunus persica HOM05D004137 ORTHO05D004804 7.0e-15 84.0 96 59.4
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 2.7e-14 82.0 98 55.1
vmacro20990 Vaccinium macrocarpon HOM05D004137 ORTHO05D004804 2.7e-14 82.0 95 61.1
Cc06_g23020 Coffea canephora HOM05D004137 ORTHO05D004804 4.5e-14 81.3 60 66.7
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 5.9e-14 80.9 95 57.9
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.3e-13 79.7 95 52.6
PGSC0003DMG400023737 Solanum tuberosum HOM05D004137 ORTHO05D004804 1.7e-13 79.3 60 63.3
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 2.3e-13 79.0 60 65.0
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 2.9e-13 78.6 62 62.9
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 2.9e-13 78.6 59 62.7
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 5.0e-13 77.8 99 49.5
Cpa.g.sc51.119 Carica papaya HOM05D004137 ORTHO05D004804 8.6e-13 77.0 73 57.5
Potri.013G057766 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.9e-12 75.9 95 51.6
Cfa016445 Carpinus fangiana HOM05D001721 ORTHO05D001804 2.5e-12 75.5 60 66.7
Haze_19423 Corylus avellana HOM05D004137 ORTHO05D004804 2.5e-12 75.5 63 65.1
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 2.5e-12 75.5 70 58.6
Gohir.A12G175500 Gossypium hirsutum HOM05D004137 ORTHO05D004804 3.2e-12 75.1 66 57.6
FvH4_4g27600 Fragaria vesca HOM05D004137 ORTHO05D004804 7.2e-12 73.9 51 74.5
Gohir.D12G178750 Gossypium hirsutum HOM05D004137 ORTHO05D004804 7.2e-12 73.9 74 54.1
Gorai.008G191500 Gossypium raimondii HOM05D004137 ORTHO05D004804 7.2e-12 73.9 74 55.4
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 9.5e-12 73.6 60 61.7
ClCG10G013400 Citrullus lanatus HOM05D004137 ORTHO05D004804 9.5e-12 73.6 97 51.5
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 1.6e-11 72.8 60 58.3
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 2.1e-11 72.4 100 51.0
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 2.8e-11 72.0 70 55.7
Sed0004008 Sechium edule HOM05D004137 ORTHO05D004804 2.8e-11 72.0 60 58.3
Ciclev10023092m.g Citrus clementina HOM05D004137 ORTHO05D004804 3.6e-11 71.6 59 59.3
MELO3C026884.2 Cucumis melo HOM05D004137 ORTHO05D004804 3.6e-11 71.6 98 50.0
CiPaw.09G002200 Carya illinoinensis HOM05D004137 ORTHO05D004804 4.7e-11 71.2 66 59.1
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 4.7e-11 71.2 60 56.7
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 4.7e-11 71.2 83 47.0
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 8.0e-11 70.5 79 49.4
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 8.0e-11 70.5 91 46.2
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 3.0e-10 68.6 69 53.6
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 4.0e-10 68.2 67 46.3
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 6.8e-10 67.4 71 50.7
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 1.2e-09 66.6 62 51.6
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.2e-09 66.6 60 58.3
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 2.0e-09 65.9 60 55.0
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 2.6e-09 65.5 60 56.7
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.6e-09 65.5 60 56.7
Lalb_Chr14g0364521 Lupinus albus HOM05D004137 ORTHO05D004804 2.6e-09 65.5 64 51.6
Medtr7g085660 Medicago truncatula HOM05D004137 ORTHO05D004804 3.4e-09 65.1 60 60.0
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 4.4e-09 64.7 68 47.1
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 7.5e-09 63.9 60 56.7
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 7.5e-09 63.9 67 47.8
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 7.5e-09 63.9 67 47.8
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.3e-08 63.2 100 50.0
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 1.7e-08 62.8 49 61.2
Lj1g0005734 Lotus japonicus HOM05D004137 ORTHO05D004804 2.8e-08 62.0 46 63.0
BcaC05g29894 Brassica carinata HOM05D004137 ORTHO05D004804 3.7e-08 61.6 59 49.2
BolC5t34968H Brassica oleracea HOM05D004137 ORTHO05D004804 3.7e-08 61.6 59 49.2
BcaC05g30244 Brassica carinata HOM05D004137 ORTHO05D004804 4.9e-08 61.2 59 49.2
BcaC05g30291 Brassica carinata HOM05D004137 ORTHO05D004804 4.9e-08 61.2 59 49.2
A05p43490 Brassica napus HOM05D004137 ORTHO05D004804 4.9e-08 61.2 59 49.2
BraA05t23089Z Brassica rapa HOM05D004137 ORTHO05D004804 4.9e-08 61.2 59 49.2
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 4.9e-08 61.2 60 48.3
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 6.3e-08 60.8 62 48.4
Carub.0003s0313 Capsella rubella HOM05D004137 ORTHO05D004804 6.3e-08 60.8 59 49.2
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 6.3e-08 60.8 60 50.0
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 8.3e-08 60.5 71 46.5
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 1.4e-07 59.7 60 46.7
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 1.8e-07 59.3 68 45.6
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 2.4e-07 58.9 70 48.6
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.1e-07 58.5 62 53.2
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 4.1e-07 58.2 70 48.6
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 4.1e-07 58.2 68 39.7
VMungo1383G3601 Vigna mungo HOM05D001721 ORTHO05D001804 4.1e-07 58.2 48 62.5
Lalb_Chr07g0185901 Lupinus albus HOM05D004137 ORTHO05D004804 5.4e-07 57.8 97 41.2
ClCG02G024390 Citrullus lanatus HOM05D004137 ORTHO05D004804 7.0e-07 57.4 60 53.3
Phvul.001G111100 Phaseolus vulgaris HOM05D004137 ORTHO05D004804 7.0e-07 57.4 48 60.4
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.2e-06 56.6 62 51.6
Glyma.19G112300 Glycine max HOM05D004137 ORTHO05D004804 2.7e-06 55.5 56 58.9
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 2.7e-06 55.5 60 45.0
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 5.9e-06 54.3 60 43.3
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 5.9e-06 54.3 61 45.9
HPP92_015924 Vanilla planifolia HOM05D004137 ORTHO05D004804 5.9e-06 54.3 63 46.0
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 7.8e-06 53.9 62 50.0
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 7.8e-06 53.9 69 43.5


User provided reference genes

Program Settings