Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g075240 Amaranthus hybridus HOM05D005047 ORTHO05D006540 2.5e-104 382.1 189 100.0
Hund19253 Selenicereus undatus HOM05D005047 ORTHO05D006540 9.7e-93 343.6 190 87.9
AUR62032663 Chenopodium quinoa HOM05D005047 ORTHO05D006540 8.2e-92 340.5 184 89.1
EL10Ac3g06787 Beta vulgaris HOM05D005047 ORTHO05D006540 1.5e-88 329.7 198 81.8
FAN12G1457 Fragaria x ananassa HOM05D005047 ORTHO05D006540 3.6e-87 325.1 185 82.7
FAN07G0410 Fragaria x ananassa HOM05D005047 ORTHO05D006540 3.0e-86 322.0 185 82.2
Sc13g0002770 Simmondsia chinensis HOM05D005047 ORTHO05D006540 4.4e-85 318.2 202 77.2
ClCG05G003600 Citrullus lanatus HOM05D005047 ORTHO05D006540 7.5e-85 317.4 178 84.3
Ca_11862_v3 Cicer arietinum L. HOM05D005047 ORTHO05D006540 2.2e-84 315.8 194 78.9
Psat6g048720 Pisum sativum HOM05D005047 ORTHO05D006540 2.8e-84 315.5 195 77.9
GSVIVG01029046001 Vitis vinifera HOM05D005047 ORTHO05D006540 4.8e-84 314.7 202 77.7
Nitab4.5_0010267g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 8.3e-84 313.9 201 76.1
AUR62035305 Chenopodium quinoa HOM05D005047 ORTHO05D006540 1.1e-83 313.5 247 66.4
RcHm_v2.0_Chr4g0396911 Rosa chinensis HOM05D005047 ORTHO05D006540 4.1e-83 311.6 199 76.4
PGSC0003DMG400029615 Solanum tuberosum HOM05D005047 ORTHO05D006540 5.4e-83 311.2 201 75.1
Medtr1g047390 Medicago truncatula HOM05D005047 ORTHO05D006540 7.0e-83 310.8 194 77.3
Sopen09g034350 Solanum pennellii HOM05D005047 ORTHO05D006540 1.6e-82 309.7 201 74.6
CANSAT78G0753 Cannabis sativa HOM05D005047 ORTHO05D006540 2.7e-82 308.9 200 75.5
CANSAT78G2209 Cannabis sativa HOM05D005047 ORTHO05D006540 2.7e-82 308.9 200 75.5
Ciclev10005905m.g Citrus clementina HOM05D005047 ORTHO05D006540 2.7e-82 308.9 193 78.2
COL.COLO4_34082 Corchorus olitorius HOM05D005047 ORTHO05D006540 2.7e-82 308.9 201 75.6
TAR633G1642 Trochodendron aralioides HOM05D005047 ORTHO05D006540 3.5e-82 308.5 199 77.4
Aa31LG9G3930 Aethionema arabicum HOM05D005047 ORTHO05D006540 4.5e-82 308.1 194 77.3
vmacro00514 Vaccinium macrocarpon HOM05D005047 ORTHO05D006540 4.5e-82 308.1 178 81.5
A04p08470 Brassica napus HOM05D005047 ORTHO05D006540 5.9e-82 307.8 201 75.6
BolC4t25799H Brassica oleracea HOM05D005047 ORTHO05D006540 5.9e-82 307.8 201 75.6
Cc03_g07220 Coffea canephora HOM05D005047 ORTHO05D006540 5.9e-82 307.8 201 73.6
Thhalv10026260m.g Eutrema salsugineum HOM05D005047 ORTHO05D006540 5.9e-82 307.8 201 74.6
PSO782G5131 Papaver somniferum HOM05D005047 ORTHO05D006540 5.9e-82 307.8 202 75.2
PGR142G1511 Punica granatum HOM05D005047 ORTHO05D006540 5.9e-82 307.8 200 74.5
BcaB02g08656 Brassica carinata HOM05D005047 ORTHO05D006540 7.7e-82 307.4 202 75.2
CiPaw.01G126600 Carya illinoinensis HOM05D005047 ORTHO05D006540 1.0e-81 307.0 202 74.3
Dinv38281 Davidia involucrata HOM05D005047 ORTHO05D006540 1.3e-81 306.6 201 75.6
Solyc09g091420.4 Solanum lycopersicum HOM05D005047 ORTHO05D006540 1.3e-81 306.6 201 74.1
Thecc.04G211900 Theobroma cacao HOM05D005047 ORTHO05D006540 1.3e-81 306.6 196 75.5
AL7G42780 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 1.7e-81 306.2 200 75.0
BraA04t16537Z Brassica rapa HOM05D005047 ORTHO05D006540 1.7e-81 306.2 199 74.9
PSO478G4795 Papaver somniferum HOM05D005047 ORTHO05D006540 2.3e-81 305.8 202 75.2
C04p42210 Brassica napus HOM05D005047 ORTHO05D006540 2.9e-81 305.4 201 74.1
Lj6g0004838 Lotus japonicus HOM05D005047 ORTHO05D006540 3.8e-81 305.1 198 75.8
AT4G13720 Arabidopsis thaliana HOM05D005047 ORTHO05D006540 6.6e-81 304.3 192 77.1
Lalb_Chr01g0010841 Lupinus albus HOM05D005047 ORTHO05D006540 6.6e-81 304.3 199 75.4
Sp7g11500 Schrenkiella parvula HOM05D005047 ORTHO05D006540 6.6e-81 304.3 193 76.2
BcaC02g09395 Brassica carinata HOM05D005047 ORTHO05D006540 8.6e-81 303.9 191 77.0
Cpa.g.sc59.91 Carica papaya HOM05D005047 ORTHO05D006540 1.5e-80 303.1 197 75.6
CsaV3_3G011290 Cucumis sativus L. HOM05D005047 ORTHO05D006540 1.5e-80 303.1 190 77.9
Duzib212G0386 Durio zibethinus HOM05D005047 ORTHO05D006540 1.9e-80 302.8 201 73.1
Prupe.1G060800 Prunus persica HOM05D005047 ORTHO05D006540 1.9e-80 302.8 202 73.8
TWI73G0442 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 1.9e-80 302.8 202 72.8
Migut.N00337 Erythranthe guttata HOM05D005047 ORTHO05D006540 2.5e-80 302.4 194 76.3
CSS0002501 Camellia sinensis var. sinensis HOM05D005047 ORTHO05D006540 3.3e-80 302.0 198 73.7
Potri.001G052400 Populus trichocarpa HOM05D005047 ORTHO05D006540 3.3e-80 302.0 194 75.8
Eucgr.H00094 Eucalyptus grandis HOM05D005047 ORTHO05D006540 4.2e-80 301.6 200 75.0
Gorai.006G219600 Gossypium raimondii HOM05D005047 ORTHO05D006540 4.2e-80 301.6 202 72.8
Gohir.A09G202200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 5.5e-80 301.2 203 72.9
Haze_11554 Corylus avellana HOM05D005047 ORTHO05D006540 9.5e-80 300.4 197 75.1
Gohir.D09G196200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 1.2e-79 300.1 202 72.8
HanXRQChr01g0022691 Helianthus annuus HOM05D005047 ORTHO05D006540 1.2e-79 300.1 191 76.4
THA.LOC104808728 Tarenaya hassleriana HOM05D005047 ORTHO05D006540 2.1e-79 299.3 200 74.0
Glyma.10G125100 Glycine max HOM05D005047 ORTHO05D006540 2.8e-79 298.9 193 75.1
AL5G12130 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 3.6e-79 298.5 192 75.5
Glyma.20G077400 Glycine max HOM05D005047 ORTHO05D006540 4.7e-79 298.1 193 74.6
Phvul.007G236950 Phaseolus vulgaris HOM05D005047 ORTHO05D006540 1.0e-78 297.0 194 73.7
Sed0007809 Sechium edule HOM05D005047 ORTHO05D006540 1.0e-78 297.0 192 75.5
ECA248G2813 Erigeron canadensis HOM05D005047 ORTHO05D006540 5.2e-78 294.7 199 73.4
Potri.003G175800 Populus trichocarpa HOM05D005047 ORTHO05D006540 1.2e-77 293.5 200 70.5
Sabra03G0128700 Salix brachista HOM05D005047 ORTHO05D006540 3.4e-77 292.0 216 67.1
Hma1.2p1_0903F.1_g235140 Hydrangea macrophylla HOM05D005047 ORTHO05D006540 7.5e-77 290.8 201 71.6
Zm00001eb046670 Zea mays HOM05D005047 ORTHO05D006540 1.7e-76 289.7 196 73.0
SalBow3G2150 Salvia bowleyana HOM05D005047 ORTHO05D006540 2.8e-76 288.9 220 65.0
CDE04G3429 Ceratophyllum demersum HOM05D005047 ORTHO05D006540 4.9e-76 288.1 188 74.5
Os10g0457500 Oryza sativa ssp. japonica HOM05D005047 ORTHO05D006540 6.3e-76 287.7 190 74.2
HPP92_015205 Vanilla planifolia HOM05D005047 ORTHO05D006540 1.8e-75 286.2 198 71.7
SGA_v2.0_scaffold2G00831 Striga asiatica HOM05D005047 ORTHO05D006540 2.4e-75 285.8 229 64.2
TPR.G10100 Trifolium pratense HOM05D005047 ORTHO05D006540 4.5e-74 281.6 171 78.9
Lj6A611T47 Lonicera japonica HOM05D005047 ORTHO05D006540 5.9e-74 281.2 198 71.7
Dinv29555 Davidia involucrata HOM05D005047 ORTHO05D006540 7.8e-74 280.8 192 76.0
unitig_749.g13975 Utricularia gibba HOM05D005047 ORTHO05D006540 2.3e-73 279.3 212 67.0
VMungo0720G0344 Vigna mungo HOM05D005047 ORTHO05D006540 2.3e-73 279.3 246 58.5
Manes.15G048800 Manihot esculenta HOM05D005047 ORTHO05D006540 1.9e-72 276.2 195 68.2
Lsat_1_v5_gn_0_4860 Lactuca sativa HOM05D005047 ORTHO05D006540 5.6e-72 274.6 239 60.7
Manes.03G152700 Manihot esculenta HOM05D005047 ORTHO05D006540 7.3e-72 274.2 194 68.6
Aa31LG9G3940 Aethionema arabicum HOM05D005047 ORTHO05D006540 2.1e-71 272.7 212 63.7
Mapoly0026s0018 Marchantia polymorpha HOM05D005047 ORTHO05D006540 2.1e-71 272.7 186 71.5
Nitab4.5_0010728g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 6.4e-68 261.2 204 65.2
SMO367G0232 Selaginella moellendorffii HOM05D005047 ORTHO05D006540 6.4e-68 261.2 191 66.0
Pp3c16_19640 Physcomitrium patens HOM05D005047 ORTHO05D006540 1.1e-67 260.4 194 67.5
Oeu006715.2 Olea europaea HOM05D005047 ORTHO05D006540 1.9e-67 259.6 205 66.8
Nn3g19880 Nelumbo nucifera HOM05D005047 ORTHO05D006540 3.2e-67 258.8 187 71.1
CAN.G500.97 Capsicum annuum HOM05D005047 ORTHO05D006540 2.5e-64 249.2 155 76.8
AagrBONN_evm.TU.Sc2ySwM_344.3277 Anthoceros agrestis HOM05D005047 ORTHO05D006540 9.5e-64 247.3 188 64.9
Carub.0007s2874 Capsella rubella HOM05D005047 ORTHO05D006540 2.8e-63 245.7 155 77.4
Aqoxy2G03810 Aquilegia oxysepala HOM05D005047 ORTHO05D006540 4.1e-59 231.9 179 63.7
Peaxi162Scf00047g01312 Petunia axillaris HOM05D005047 ORTHO05D006540 3.9e-57 225.3 187 61.5
Rhsim09G0049500 Rhododendron simsii HOM05D005047 ORTHO05D006540 4.3e-56 221.9 121 82.6
ATR0088G035 Amborella trichopoda HOM05D005047 ORTHO05D006540 6.8e-54 214.5 140 74.3
MCO04G006 Micromonas commoda HOM05D005047 ORTHO05D006540 1.2e-53 213.8 177 59.9
arahy.Tifrunner.gnm1.ann1.BK86JE Arachis hypogaea HOM05D005047 ORTHO05D006540 2.0e-53 213.0 181 59.1
SHI24117 Sapria himalayana HOM05D005047 ORTHO05D006540 7.5e-53 211.1 196 56.6
MBI07_g19553_MAGBIO Magnolia biondii HOM05D005047 ORTHO05D006540 2.2e-52 209.5 215 55.3
Cre02.g095089 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 7.1e-51 204.5 185 54.1
Atru.chr4.1794 Acer truncatum HOM05D005047 ORTHO05D006540 6.0e-50 201.4 134 72.4
Zm00001eb377030 Zea mays HOM05D005047 ORTHO05D006540 1.7e-49 199.9 135 71.1
Actinidia37393 Actinidia chinensis HOM05D005047 ORTHO05D006540 3.6e-47 192.2 198 55.1
PRCOL_00006994 Prasinoderma coloniale HOM05D005047 ORTHO05D006540 6.4e-44 181.4 180 51.1
Zm00001eb086240 Zea mays HOM05D005047 ORTHO05D006540 2.4e-43 179.5 116 72.4
CARHR219510 Cardamine hirsuta HOM05D005047 ORTHO05D006540 7.1e-43 177.9 113 73.5
MD13G1230900 Malus domestica HOM05D005047 ORTHO05D006540 7.8e-42 174.5 103 75.7
QL06p023224 Quercus lobata HOM05D005047 ORTHO05D006540 1.9e-40 169.9 101 76.2
Zm00001eb102100 Zea mays HOM05D005047 ORTHO05D006540 2.8e-39 166.0 135 64.4
arahy.Tifrunner.gnm1.ann1.0X932T Arachis hypogaea HOM05D005047 ORTHO05D006540 3.1e-38 162.5 101 73.3
Cfa024488 Carpinus fangiana HOM05D005047 ORTHO05D006540 3.1e-38 162.5 179 48.0
Sed0007961 Sechium edule HOM05D005047 ORTHO05D006540 6.9e-38 161.4 180 54.4
Carub.0007s2873 Capsella rubella HOM05D005047 ORTHO05D006540 2.0e-37 159.8 92 78.3
Zm00001eb177140 Zea mays HOM05D005047 ORTHO05D006540 5.8e-37 158.3 98 73.5
QL06p023220 Quercus lobata HOM05D005047 ORTHO05D006540 1.4e-35 153.7 84 88.1
MELO3C031602.2 Cucumis melo HOM05D005047 ORTHO05D006540 4.2e-35 152.1 87 82.8
FvH4_4g05750 Fragaria vesca HOM05D005047 ORTHO05D006540 3.5e-34 149.1 85 85.9
DCAR_002273 Daucus carota HOM05D005047 ORTHO05D006540 1.7e-33 146.7 87 81.6
TAR636G1612 Trochodendron aralioides HOM05D005047 ORTHO05D006540 1.9e-32 143.3 91 80.2
Cre13.g568950 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 2.5e-32 142.9 165 45.5
MSTRG.21943 Avicennia marina HOM05D005047 ORTHO05D006540 5.6e-32 141.7 87 78.2
TWI09G0343 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 2.1e-31 139.8 98 66.3
Zm00001eb180620 Zea mays HOM05D005047 ORTHO05D006540 1.4e-30 137.1 83 73.5
FAN17G1156 Fragaria x ananassa HOM05D005047 ORTHO05D006540 1.6e-26 123.6 68 80.9
Zm00001eb425490 Zea mays HOM05D005047 ORTHO05D006540 1.1e-24 117.5 67 74.6
SEGI_09208 Sequoiadendron giganteum HOM05D005047 ORTHO05D006540 3.5e-18 95.9 61 73.8
Sabra01G0036900 Salix brachista HOM05D005047 ORTHO05D006540 1.1e-16 90.9 48 83.3
CBR_g49288 Chara braunii HOM05D005047 ORTHO05D006540 1.4e-14 84.0 61 62.3
Medtr1g047400 Medicago truncatula HOM05D005047 ORTHO05D006540 9.0e-14 81.3 60 70.0
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 7.6e-13 78.2 43 88.4
EL10Ac7g17560 Beta vulgaris HOM05D005047 ORTHO05D006373 1.0e-12 77.8 38 92.1
EL10Ac6g14438 Beta vulgaris HOM05D005047 ORTHO05D006540 4.9e-12 75.5 38 89.5
TPR.G40557 Trifolium pratense HOM05D005047 ORTHO05D006540 1.6e-10 70.5 41 78.0
arahy.Tifrunner.gnm1.ann1.FRRS2Q Arachis hypogaea HOM05D005047 ORTHO05D084578 1.3e-09 67.4 63 54.0
Glyma.12G173400 Glycine max HOM05D005047 ORTHO05D006540 6.7e-09 65.1 36 86.1
Ca_28777_v3 Cicer arietinum L. HOM05D005047 ORTHO05D147776 7.4e-08 61.6 138 35.5
FAN26G2286 Fragaria x ananassa HOM05D005047 ORTHO05D006540 2.2e-07 60.1 34 85.3
Duzib268G0889 Durio zibethinus HOM05D005047 ORTHO05D006540 2.8e-07 59.7 80 42.5
FvH4_5g32911 Fragaria vesca HOM05D005047 ORTHO05D006540 2.8e-07 59.7 30 93.3
FvH4_6g44040 Fragaria vesca HOM05D005047 ORTHO05D006540 2.8e-07 59.7 30 93.3
CsaV3_6G019130 Cucumis sativus L. HOM05D005047 ORTHO05D006540 4.8e-07 58.9 67 55.2
FAN01G1709 Fragaria x ananassa HOM05D005047 ORTHO05D006540 8.2e-07 58.2 30 90.0
FAN27G1012 Fragaria x ananassa HOM05D029863 ORTHO05D006540 8.2e-07 58.2 30 90.0


User provided reference genes

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