Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g075110 Amaranthus hybridus HOM05D004446 ORTHO05D005346 9.9e-67 256.5 120 100.0
AUR62035332 Chenopodium quinoa HOM05D004446 ORTHO05D005346 1.1e-60 236.5 144 80.6
EL10Ac3g06748 Beta vulgaris HOM05D004446 ORTHO05D005346 3.1e-60 235.0 144 80.6
HanXRQChr14g0434271 Helianthus annuus HOM05D004446 ORTHO05D005346 3.2e-57 224.9 144 75.7
Hund19262 Selenicereus undatus HOM05D004446 ORTHO05D005346 5.5e-57 224.2 144 75.7
Sc19g0005800 Simmondsia chinensis HOM05D004446 ORTHO05D005346 5.5e-57 224.2 144 75.7
HanXRQChr06g0183261 Helianthus annuus HOM05D004446 ORTHO05D005346 2.7e-56 221.9 144 74.3
DCAR_027363 Daucus carota HOM05D004446 ORTHO05D005346 6.0e-56 220.7 144 74.3
SGA_v2.0_scaffold155G37240 Striga asiatica HOM05D004446 ORTHO05D005346 1.0e-55 219.9 144 74.3
ECA238G1521 Erigeron canadensis HOM05D004446 ORTHO05D005346 1.3e-55 219.5 144 73.6
Nn2g14612 Nelumbo nucifera HOM05D004446 ORTHO05D005346 1.3e-55 219.5 144 74.3
Lsat_1_v5_gn_2_41880 Lactuca sativa HOM05D004446 ORTHO05D005346 2.3e-55 218.8 143 74.1
MSTRG.24643 Avicennia marina HOM05D004446 ORTHO05D005346 3.0e-55 218.4 144 72.9
Nn5g27558 Nelumbo nucifera HOM05D004446 ORTHO05D005346 6.7e-55 217.2 144 72.2
AUR62035909 Chenopodium quinoa HOM05D004446 ORTHO05D005346 8.7e-55 216.9 135 79.3
ClCG06G007390 Citrullus lanatus HOM05D004446 ORTHO05D005346 8.7e-55 216.9 144 73.6
CsaV3_2G012290 Cucumis sativus L. HOM05D004446 ORTHO05D005346 8.7e-55 216.9 144 73.6
Thecc.04G215500 Theobroma cacao HOM05D004446 ORTHO05D005346 8.7e-55 216.9 144 74.3
vmacro00521 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 1.1e-54 216.5 144 72.2
Aqoxy3G02680 Aquilegia oxysepala HOM05D004446 ORTHO05D005346 1.5e-54 216.1 144 72.9
CSS0043422 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 1.5e-54 216.1 144 72.2
CSS0044163 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 1.5e-54 216.1 144 72.2
Zm00001eb008370 Zea mays HOM05D004446 ORTHO05D005346 1.5e-54 216.1 144 72.2
Atru.chr4.1819 Acer truncatum HOM05D004446 ORTHO05D005346 3.3e-54 214.9 144 72.2
Nitab4.5_0000451g0180 Nicotiana tabacum HOM05D004446 ORTHO05D005346 3.3e-54 214.9 144 72.9
Nitab4.5_0018759g0010 Nicotiana tabacum HOM05D004446 ORTHO05D005346 3.3e-54 214.9 144 72.9
CANSAT78G0709 Cannabis sativa HOM05D004446 ORTHO05D005346 4.3e-54 214.5 144 72.9
MELO3C023063.2 Cucumis melo HOM05D004446 ORTHO05D005346 4.3e-54 214.5 144 72.9
Peaxi162Scf00047g01619 Petunia axillaris HOM05D004446 ORTHO05D005346 4.3e-54 214.5 144 72.9
Solyc09g091170.4 Solanum lycopersicum HOM05D004446 ORTHO05D005346 4.3e-54 214.5 144 72.9
Sopen09g034140 Solanum pennellii HOM05D004446 ORTHO05D005346 4.3e-54 214.5 144 72.9
Gohir.A10G120100 Gossypium hirsutum HOM05D004446 ORTHO05D005346 5.7e-54 214.2 144 73.6
Gohir.D10G146300 Gossypium hirsutum HOM05D004446 ORTHO05D005346 5.7e-54 214.2 144 73.6
Gorai.011G163400 Gossypium raimondii HOM05D004446 ORTHO05D005346 5.7e-54 214.2 144 73.6
TAR362G0142 Trochodendron aralioides HOM05D004446 ORTHO05D005346 5.7e-54 214.2 144 71.5
TAR365G0553 Trochodendron aralioides HOM05D004446 ORTHO05D005346 5.7e-54 214.2 144 72.2
Gohir.A10G120200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 7.4e-54 213.8 144 72.9
Gohir.D10G146200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 9.7e-54 213.4 144 72.9
Potri.001G054500 Populus trichocarpa HOM05D004446 ORTHO05D005346 9.7e-54 213.4 144 72.9
SalBow2G1310 Salvia bowleyana HOM05D004446 ORTHO05D005346 9.7e-54 213.4 144 70.8
Duzib212G0284 Durio zibethinus HOM05D004446 ORTHO05D005346 1.3e-53 213.0 144 72.2
Sed0017441 Sechium edule HOM05D004446 ORTHO05D005346 1.6e-53 212.6 144 70.1
TAR633G2153 Trochodendron aralioides HOM05D004446 ORTHO05D005346 1.6e-53 212.6 142 72.5
Actinidia35938 Actinidia chinensis HOM05D004446 ORTHO05D005346 2.8e-53 211.8 144 70.1
Gorai.011G163300 Gossypium raimondii HOM05D004446 ORTHO05D005346 2.8e-53 211.8 144 72.2
Lsat_1_v5_gn_2_41141 Lactuca sativa HOM05D004446 ORTHO05D005346 2.8e-53 211.8 141 73.0
Rhsim09G0047000 Rhododendron simsii HOM05D004446 ORTHO05D005346 2.8e-53 211.8 151 68.2
RhsimUnG0181300 Rhododendron simsii HOM05D004446 ORTHO05D005346 2.8e-53 211.8 151 68.2
CiPaw.02G127900 Carya illinoinensis HOM05D004446 ORTHO05D005346 3.7e-53 211.5 144 70.8
Potri.003G173800 Populus trichocarpa HOM05D004446 ORTHO05D005346 3.7e-53 211.5 144 71.5
PGR044G1212 Punica granatum HOM05D004446 ORTHO05D005346 3.7e-53 211.5 144 71.5
PGSC0003DMG400011587 Solanum tuberosum HOM05D004446 ORTHO05D005346 3.7e-53 211.5 144 72.2
Ciclev10006172m.g Citrus clementina HOM05D004446 ORTHO05D005346 4.8e-53 211.1 144 71.5
Prupe.1G056200 Prunus persica HOM05D004446 ORTHO05D005346 4.8e-53 211.1 144 71.5
Cpa.g.sc59.66 Carica papaya HOM05D004446 ORTHO05D005346 6.3e-53 210.7 144 70.8
Glyma.20G079400 Glycine max HOM05D004446 ORTHO05D005346 6.3e-53 210.7 144 70.8
Cc00_g09360 Coffea canephora HOM05D004446 ORTHO05D005346 8.2e-53 210.3 144 70.8
COL.COLO4_05729 Corchorus olitorius HOM05D004446 ORTHO05D005346 8.2e-53 210.3 144 71.5
TWI73G1246 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 8.2e-53 210.3 144 70.8
CDE04G3627 Ceratophyllum demersum HOM05D004446 ORTHO05D005346 1.1e-52 209.9 144 70.1
THA.LOC104826105 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 1.1e-52 209.9 144 71.5
FvH4_4g05410 Fragaria vesca HOM05D004446 ORTHO05D005346 1.4e-52 209.5 144 70.8
FAN07G2016 Fragaria x ananassa HOM05D004446 ORTHO05D005346 1.4e-52 209.5 144 70.8
FAN12G2493 Fragaria x ananassa HOM05D004446 ORTHO05D005346 1.4e-52 209.5 144 70.8
FAN12G4338 Fragaria x ananassa HOM05D004446 ORTHO05D005346 1.4e-52 209.5 144 70.8
MD16G1234000 Malus domestica HOM05D004446 ORTHO05D005346 1.4e-52 209.5 144 70.1
AL1G14310 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 1.8e-52 209.1 144 72.2
Eucgr.H02865 Eucalyptus grandis HOM05D004446 ORTHO05D005346 1.8e-52 209.1 144 70.1
Manes.03G155100 Manihot esculenta HOM05D004446 ORTHO05D005346 1.8e-52 209.1 144 71.5
MD13G1228700 Malus domestica HOM05D004446 ORTHO05D005346 3.1e-52 208.4 144 70.1
Zm00001eb401250 Zea mays HOM05D004446 ORTHO05D005346 3.1e-52 208.4 144 69.4
CARHR003980 Cardamine hirsuta HOM05D004446 ORTHO05D005346 4.1e-52 208.0 144 71.5
Migut.G00605 Erythranthe guttata HOM05D004446 ORTHO05D005346 5.3e-52 207.6 140 72.1
ATR0736G077 Amborella trichopoda HOM05D004446 ORTHO05D005346 9.0e-52 206.8 144 69.4
Lalb_Chr01g0011251 Lupinus albus HOM05D004446 ORTHO05D005346 1.2e-51 206.5 144 67.4
THA.LOC104816014 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 1.2e-51 206.5 144 70.1
HPP92_008960 Vanilla planifolia HOM05D004446 ORTHO05D005346 1.2e-51 206.5 144 68.8
arahy.Tifrunner.gnm1.ann1.VC13RQ Arachis hypogaea HOM05D004446 ORTHO05D005346 1.5e-51 206.1 144 68.8
Glyma.10G128100 Glycine max HOM05D004446 ORTHO05D005346 1.5e-51 206.1 144 69.4
Phvul.007G238600 Phaseolus vulgaris HOM05D004446 ORTHO05D005346 1.5e-51 206.1 144 68.1
RcHm_v2.0_Chr4g0396561 Rosa chinensis HOM05D004446 ORTHO05D005346 1.5e-51 206.1 144 69.4
AL4G28840 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 2.0e-51 205.7 144 70.8
CiPaw.01G206200 Carya illinoinensis HOM05D004446 ORTHO05D005346 2.0e-51 205.7 144 68.8
Hma1.2p1_2329F.1_g320020 Hydrangea macrophylla HOM05D004446 ORTHO05D005346 2.6e-51 205.3 175 60.0
TWI09G0335 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 2.6e-51 205.3 144 69.4
AT1G04630 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 3.4e-51 204.9 144 70.1
Carub.0001s0386 Capsella rubella HOM05D004446 ORTHO05D005346 3.4e-51 204.9 144 70.1
Lalb_Chr03g0036811 Lupinus albus HOM05D004446 ORTHO05D005346 3.4e-51 204.9 144 68.1
vmacro22557 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 3.4e-51 204.9 154 65.6
BcaC07g36901 Brassica carinata HOM05D004446 ORTHO05D005346 4.5e-51 204.5 144 70.1
A08p36850 Brassica napus HOM05D004446 ORTHO05D005346 4.5e-51 204.5 144 70.1
A09p67770 Brassica napus HOM05D004446 ORTHO05D005346 4.5e-51 204.5 144 70.1
A10p03060 Brassica napus HOM05D004446 ORTHO05D005346 4.5e-51 204.5 144 70.1
C05p02820 Brassica napus HOM05D004446 ORTHO05D005346 4.5e-51 204.5 144 70.1
C08p01220 Brassica napus HOM05D004446 ORTHO05D005346 4.5e-51 204.5 144 70.1
BolC5t29065H Brassica oleracea HOM05D004446 ORTHO05D005346 4.5e-51 204.5 144 70.1
BolC8t46930H Brassica oleracea HOM05D004446 ORTHO05D005346 4.5e-51 204.5 144 70.1
BraA08t35586Z Brassica rapa HOM05D004446 ORTHO05D005346 4.5e-51 204.5 144 70.1
BraA09t42108Z Brassica rapa HOM05D004446 ORTHO05D005346 4.5e-51 204.5 144 70.1
BraA10t42579Z Brassica rapa HOM05D004446 ORTHO05D005346 4.5e-51 204.5 144 70.1
Thhalv10017386m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 4.5e-51 204.5 144 70.1
Manes.15G048500 Manihot esculenta HOM05D004446 ORTHO05D005346 4.5e-51 204.5 144 69.4
Sp1g03460 Schrenkiella parvula HOM05D004446 ORTHO05D005346 4.5e-51 204.5 144 70.1
Lj6g0002383 Lotus japonicus HOM05D004446 ORTHO05D005346 5.9e-51 204.1 144 67.4
BcaB03g13480 Brassica carinata HOM05D004446 ORTHO05D005346 1.0e-50 203.4 144 69.4
PSO782G0825 Papaver somniferum HOM05D004446 ORTHO05D005346 1.0e-50 203.4 144 68.1
CARHR127230 Cardamine hirsuta HOM05D004446 ORTHO05D005346 1.3e-50 203.0 144 69.4
TPR.G23640 Trifolium pratense HOM05D004446 ORTHO05D005346 1.3e-50 203.0 144 68.8
Carub.0004s1468 Capsella rubella HOM05D004446 ORTHO05D005346 1.7e-50 202.6 144 70.1
Medtr1g046380 Medicago truncatula HOM05D004446 ORTHO05D005346 2.9e-50 201.8 144 68.1
PSO063G0015 Papaver somniferum HOM05D004446 ORTHO05D005346 2.9e-50 201.8 144 68.1
Psat6g109720 Pisum sativum HOM05D004446 ORTHO05D005346 2.9e-50 201.8 144 68.1
Ca_11789_v3 Cicer arietinum L. HOM05D004446 ORTHO05D005346 3.8e-50 201.4 144 67.4
VMungo0720G0669 Vigna mungo HOM05D004446 ORTHO05D005346 3.8e-50 201.4 144 66.7
Aa31LG1G20240 Aethionema arabicum HOM05D004446 ORTHO05D005346 5.0e-50 201.1 144 68.1
AT2G33220 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 5.0e-50 201.1 142 70.4
arahy.Tifrunner.gnm1.ann1.Q5T5LU Arachis hypogaea HOM05D004446 ORTHO05D005346 5.0e-50 201.1 142 68.3
Thhalv10009042m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 6.5e-50 200.7 144 68.8
QL06p022604 Quercus lobata HOM05D004446 ORTHO05D005346 1.9e-49 199.1 143 67.1
Aa31LG5G4110 Aethionema arabicum HOM05D004446 ORTHO05D005346 2.5e-49 198.7 144 67.4
Sp4g15520 Schrenkiella parvula HOM05D004446 ORTHO05D005346 3.2e-49 198.4 144 67.4
Dinv38297 Davidia involucrata HOM05D004446 ORTHO05D005346 4.2e-49 198.0 135 71.1
Actinidia25089 Actinidia chinensis HOM05D004446 ORTHO05D005346 7.2e-49 197.2 176 56.8
Os03g0192400 Oryza sativa ssp. japonica HOM05D004446 ORTHO05D005346 7.9e-48 193.7 141 68.8
BcaC07g42166 Brassica carinata HOM05D004446 ORTHO05D005346 9.7e-46 186.8 128 73.4
SEGI_11387 Sequoiadendron giganteum HOM05D004446 ORTHO05D005346 6.3e-45 184.1 144 60.4
Sabra03G0127300 Salix brachista HOM05D004446 ORTHO05D005346 1.0e-39 166.8 260 39.6
AagrBONN_evm.TU.Sc2ySwM_344.5082 Anthoceros agrestis HOM05D004446 ORTHO05D005346 5.7e-38 161.0 144 53.5
BolC3t14561H Brassica oleracea HOM05D004446 ORTHO05D005346 2.8e-37 158.7 128 63.3
unitig_748.g8289 Utricularia gibba HOM05D002765 ORTHO05D003083 2.0e-35 152.5 118 64.4
Sabra01G0039000 Salix brachista HOM05D004446 ORTHO05D005346 3.5e-35 151.8 308 34.4
Pp3c5_4240 Physcomitrium patens HOM05D004446 ORTHO05D005346 2.2e-34 149.1 138 52.2
Mapoly0001s0090 Marchantia polymorpha HOM05D004446 ORTHO05D005346 1.1e-33 146.7 142 51.4
CBR_g9031 Chara braunii HOM05D004446 ORTHO05D005346 4.2e-33 144.8 138 52.2
Pp3c16_2570 Physcomitrium patens HOM05D004446 ORTHO05D005346 7.2e-33 144.1 138 51.4
BolC8t52743H Brassica oleracea HOM05D004446 ORTHO05D005346 6.1e-32 141.0 117 64.1
Zm00001eb305890 Zea mays HOM05D004446 ORTHO05D005346 1.3e-26 123.2 78 71.8
Oeu008826.1 Olea europaea HOM05D004446 ORTHO05D005346 1.5e-25 119.8 64 85.9
MBI10_g44933_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 3.2e-25 118.6 63 85.7
MCO16G128 Micromonas commoda HOM05D004446 ORTHO05D005346 5.5e-25 117.9 142 43.0
GSVIVG01028486001 Vitis vinifera HOM05D004446 ORTHO05D005346 2.3e-23 112.5 84 66.7
MBI10_g35300_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 3.0e-23 112.1 142 47.2
C08p52100 Brassica napus HOM05D004446 ORTHO05D005346 3.7e-21 105.1 93 54.8
Cre16.g664600 Chlamydomonas reinhardtii HOM05D004446 ORTHO05D005346 6.3e-21 104.4 133 42.1
Dinv27149 Davidia involucrata HOM05D004446 ORTHO05D005346 6.3e-21 104.4 82 62.2
CAN.G1588.2 Capsicum annuum HOM05D004446 ORTHO05D005346 8.3e-21 104.0 55 80.0
Oeu008823.1 Olea europaea HOM05D004446 ORTHO05D005346 8.3e-21 104.0 55 80.0
SMO364G0175 Selaginella moellendorffii HOM05D004446 ORTHO05D005346 8.3e-21 104.0 143 40.6
RhsimUnG0181500 Rhododendron simsii HOM05D004446 ORTHO05D005346 2.4e-20 102.4 55 76.4
Haze_11535 Corylus avellana HOM05D004446 ORTHO05D005346 1.0e-18 97.1 55 72.7
A03p18650 Brassica napus HOM05D004446 ORTHO05D005346 2.2e-18 95.9 55 72.7
BraA03t11124Z Brassica rapa HOM05D004446 ORTHO05D005346 2.2e-18 95.9 55 72.7
SHI08306 Sapria himalayana HOM05D004446 ORTHO05D005346 6.8e-15 84.3 75 57.3
Cc05_g03600 Coffea canephora HOM05D004446 ORTHO05D005346 8.8e-15 84.0 49 75.5
C03p21790 Brassica napus HOM05D004446 ORTHO05D005346 3.4e-14 82.0 46 84.8
SHI22881 Sapria himalayana HOM05D004446 ORTHO05D005346 4.5e-11 71.6 54 64.8
BcaC01g05851 Brassica carinata HOM05D004446 ORTHO05D005346 1.6e-08 63.2 77 44.2
CSS0009466 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 3.4e-06 55.5 30 73.3


User provided reference genes

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