Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g074940 Amaranthus hybridus HOM05D006155 ORTHO05D007529 1.7e-145 519.2 253 100.0
EL10Ac3g06713 Beta vulgaris HOM05D006155 ORTHO05D007529 3.2e-115 418.7 253 81.8
Lsat_1_v5_gn_1_76101 Lactuca sativa HOM05D006155 ORTHO05D007529 1.2e-106 390.2 246 74.8
Nitab4.5_0002937g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 3.7e-103 378.6 234 75.6
Nitab4.5_0003474g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 4.8e-103 378.3 239 74.1
CANSAT78G1287 Cannabis sativa HOM05D006155 ORTHO05D007529 3.1e-102 375.6 252 71.0
Actinidia35935 Actinidia chinensis HOM05D006155 ORTHO05D007529 4.0e-102 375.2 217 80.6
Dinv27131 Davidia involucrata HOM05D006155 ORTHO05D007529 4.0e-102 375.2 234 76.5
CAN.G812.29 Capsicum annuum HOM05D006155 ORTHO05D007529 6.9e-102 374.4 251 70.9
Lj6C638T14 Lonicera japonica HOM05D006155 ORTHO05D007529 2.6e-101 372.5 216 78.7
Solyc09g090750.3 Solanum lycopersicum HOM05D006155 ORTHO05D007529 3.4e-101 372.1 231 73.6
MSTRG.24647 Avicennia marina HOM05D006155 ORTHO05D007529 7.6e-101 370.9 232 74.6
Oeu023143.1 Olea europaea HOM05D006155 ORTHO05D007529 7.6e-101 370.9 225 74.2
Oeu055271.1 Olea europaea HOM05D006155 ORTHO05D007529 7.6e-101 370.9 229 74.2
Actinidia32965 Actinidia chinensis HOM05D006155 ORTHO05D007529 1.0e-100 370.5 225 76.9
Lju2262C0T14 Lonicera japonica HOM05D006155 ORTHO05D007529 1.0e-100 370.5 216 78.2
PSO063G0276 Papaver somniferum HOM05D006155 ORTHO05D007529 1.3e-100 370.2 242 72.7
arahy.Tifrunner.gnm1.ann1.NLE1X5 Arachis hypogaea HOM05D006155 ORTHO05D007529 2.2e-100 369.4 232 74.6
Lalb_Chr02g0150741 Lupinus albus HOM05D006155 ORTHO05D007529 3.8e-100 368.6 253 70.4
Sopen09g033690 Solanum pennellii HOM05D006155 ORTHO05D007529 4.9e-100 368.2 226 74.3
PGSC0003DMG400001560 Solanum tuberosum HOM05D006155 ORTHO05D007529 4.9e-100 368.2 226 74.3
RcHm_v2.0_Chr4g0396071 Rosa chinensis HOM05D006155 ORTHO05D007529 6.5e-100 367.9 250 70.0
arahy.Tifrunner.gnm1.ann1.L647M7 Arachis hypogaea HOM05D006155 ORTHO05D007529 8.4e-100 367.5 232 74.1
Gorai.011G180400 Gossypium raimondii HOM05D006155 ORTHO05D007529 8.4e-100 367.5 223 77.6
Haze_11491 Corylus avellana HOM05D006155 ORTHO05D007529 1.1e-99 367.1 217 77.9
Hund20478 Selenicereus undatus HOM05D006155 ORTHO05D007529 1.1e-99 367.1 227 75.8
Prupe.1G052300 Prunus persica HOM05D006155 ORTHO05D007529 1.4e-99 366.7 227 75.8
Gohir.D10G160700 Gossypium hirsutum HOM05D006155 ORTHO05D007529 1.9e-99 366.3 223 77.1
MD16G1230400 Malus domestica HOM05D006155 ORTHO05D007529 2.5e-99 365.9 251 70.1
Gohir.A10G106500 Gossypium hirsutum HOM05D006155 ORTHO05D007529 3.2e-99 365.5 223 77.1
Aqoxy2G03758 Aquilegia oxysepala HOM05D006155 ORTHO05D007529 4.2e-99 365.2 217 77.9
FvH4_4g05140 Fragaria vesca HOM05D006155 ORTHO05D007529 4.2e-99 365.2 251 70.1
Cfa014810 Carpinus fangiana HOM05D006155 ORTHO05D007529 5.5e-99 364.8 252 69.8
FAN12G3888 Fragaria x ananassa HOM05D006155 ORTHO05D007529 5.5e-99 364.8 251 70.1
CSS0040589 Camellia sinensis var. sinensis HOM05D006155 ORTHO05D007529 7.1e-99 364.4 244 70.1
HanXRQChr01g0022501 Helianthus annuus HOM05D006155 ORTHO05D007529 7.1e-99 364.4 245 70.6
Hma1.2p1_0042F.1_g025650 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 7.1e-99 364.4 232 74.6
Thecc.04G268500 Theobroma cacao HOM05D006155 ORTHO05D007529 7.1e-99 364.4 247 71.3
Manes.15G047200 Manihot esculenta HOM05D006155 ORTHO05D007529 9.3e-99 364.0 218 76.1
Peaxi162Scf00125g01318 Petunia axillaris HOM05D006155 ORTHO05D007529 1.6e-98 363.2 230 74.8
PGR004G1196 Punica granatum HOM05D006155 ORTHO05D007529 1.6e-98 363.2 244 69.3
Rhsim09G0042400 Rhododendron simsii HOM05D006155 ORTHO05D007529 2.1e-98 362.8 249 70.3
TWI09G0038 Tripterygium wilfordii HOM05D006155 ORTHO05D007529 2.1e-98 362.8 253 70.0
Sabra10G0043200 Salix brachista HOM05D006155 ORTHO05D007529 2.7e-98 362.5 252 69.8
SalBow3G4628 Salvia bowleyana HOM05D006155 ORTHO05D007529 3.5e-98 362.1 236 70.3
SGA_v2.0_scaffold285G47059 Striga asiatica HOM05D006155 ORTHO05D007529 4.6e-98 361.7 251 68.1
DCAR_002295 Daucus carota HOM05D006155 ORTHO05D007529 6.0e-98 361.3 255 68.6
Cc03_g06750 Coffea canephora HOM05D006155 ORTHO05D007529 1.8e-97 359.8 238 70.2
Migut.N00320 Erythranthe guttata HOM05D006155 ORTHO05D007529 1.8e-97 359.8 215 76.3
Ciclev10005577m.g Citrus clementina HOM05D006155 ORTHO05D007529 3.0e-97 359.0 246 69.1
Duzib151G0563 Durio zibethinus HOM05D006155 ORTHO05D007529 3.9e-97 358.6 241 72.6
CDE02G2305 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 3.3e-96 355.5 231 71.0
Atru.chr4.1882 Acer truncatum HOM05D006155 ORTHO05D007529 4.3e-96 355.1 217 77.0
COL.COLO4_15996 Corchorus olitorius HOM05D006155 ORTHO05D007529 4.3e-96 355.1 217 74.7
GSVIVG01027954001 Vitis vinifera HOM05D006155 ORTHO05D007529 4.3e-96 355.1 232 71.6
Potri.010G063700 Populus trichocarpa HOM05D006155 ORTHO05D007529 9.7e-96 354.0 256 68.0
FAN22G1742 Fragaria x ananassa HOM05D006155 ORTHO05D007529 4.8e-95 351.7 273 65.2
Duzib212G0768 Durio zibethinus HOM05D006155 ORTHO05D007529 8.2e-95 350.9 243 70.0
Phvul.L001872 Phaseolus vulgaris HOM05D006155 ORTHO05D007529 8.2e-95 350.9 215 75.8
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 1.8e-94 349.7 232 70.3
Carub.0004s1472 Capsella rubella HOM05D006155 ORTHO05D007529 1.8e-94 349.7 225 70.7
VMungo0720G0761 Vigna mungo HOM05D006155 ORTHO05D007529 1.8e-94 349.7 217 75.1
AT2G33255 Arabidopsis thaliana HOM05D006155 ORTHO05D007529 2.4e-94 349.4 226 70.4
Nn3g19816 Nelumbo nucifera HOM05D006155 ORTHO05D007529 3.1e-94 349.0 223 73.5
THA.LOC104816010 Tarenaya hassleriana HOM05D006155 ORTHO05D007529 3.1e-94 349.0 228 71.1
AL4G28890 Arabidopsis lyrata HOM05D006155 ORTHO05D007529 4.1e-94 348.6 225 70.7
Aa31LG5G4150 Aethionema arabicum HOM05D006155 ORTHO05D007529 5.3e-94 348.2 244 67.2
FAN17G0987 Fragaria x ananassa HOM05D006155 ORTHO05D007529 6.9e-94 347.8 263 66.2
Glyma.10G191200 Glycine max HOM05D006155 ORTHO05D007529 6.9e-94 347.8 219 73.1
Glyma.20G199100 Glycine max HOM05D006155 ORTHO05D007529 6.9e-94 347.8 217 74.2
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 9.0e-94 347.4 230 69.1
Medtr1g073140 Medicago truncatula HOM05D006155 ORTHO05D007529 9.0e-94 347.4 217 73.3
BcaC02g07846 Brassica carinata HOM05D006155 ORTHO05D007529 1.5e-93 346.7 225 70.2
Thhalv10017161m.g Eutrema salsugineum HOM05D006155 ORTHO05D007529 2.0e-93 346.3 226 68.6
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 2.6e-93 345.9 231 69.3
BcaC02g07849 Brassica carinata HOM05D006155 ORTHO05D007529 2.6e-93 345.9 231 69.3
BraA03t11126Z Brassica rapa HOM05D006155 ORTHO05D007529 4.5e-93 345.1 231 68.0
BolC3t14563H Brassica oleracea HOM05D006155 ORTHO05D007529 5.9e-93 344.7 232 68.1
Ca_09794_v3 Cicer arietinum L. HOM05D006155 ORTHO05D007529 5.9e-93 344.7 243 67.5
ECA248G1656 Erigeron canadensis HOM05D006155 ORTHO05D007529 1.3e-92 343.6 195 79.5
A03p18670 Brassica napus HOM05D006155 ORTHO05D007529 2.9e-92 342.4 231 67.5
C03p21810 Brassica napus HOM05D006155 ORTHO05D007529 2.9e-92 342.4 232 67.2
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 2.9e-92 342.4 231 68.0
BcaC01g05849 Brassica carinata HOM05D006155 ORTHO05D007529 3.8e-92 342.0 225 69.3
TPR.G18563 Trifolium pratense HOM05D006155 ORTHO05D007529 6.5e-92 341.3 222 71.2
Lj5g0009281 Lotus japonicus HOM05D006155 ORTHO05D007529 2.5e-91 339.3 227 70.9
CARHR127260 Cardamine hirsuta HOM05D006155 ORTHO05D007529 3.2e-91 339.0 226 68.6
Eucgr.H02890 Eucalyptus grandis HOM05D006155 ORTHO05D007529 7.2e-91 337.8 217 70.5
Sp4g15560 Schrenkiella parvula HOM05D006155 ORTHO05D007529 9.3e-91 337.4 226 67.3
ClCG05G003860 Citrullus lanatus HOM05D006155 ORTHO05D007529 4.6e-90 335.1 220 70.5
CsaV3_3G011540 Cucumis sativus L. HOM05D006155 ORTHO05D007529 1.8e-89 333.2 220 70.9
MELO3C006364.2 Cucumis melo HOM05D006155 ORTHO05D007529 6.7e-89 331.3 250 64.8
vmacro00537 Vaccinium macrocarpon HOM05D006155 ORTHO05D007529 1.1e-88 330.5 341 52.5
Sed0003799 Sechium edule HOM05D006155 ORTHO05D007529 1.5e-88 330.1 236 66.9
unitig_899.g15552 Utricularia gibba HOM05D006155 ORTHO05D007529 2.8e-87 325.9 300 56.3
Os02g0816100 Oryza sativa ssp. japonica HOM05D006155 ORTHO05D007529 9.1e-86 320.9 249 63.1
Sed0011773 Sechium edule HOM05D006155 ORTHO05D007529 1.4e-83 313.5 217 66.4
MBI07_g08907_MAGBIO Magnolia biondii HOM05D006155 ORTHO05D007529 3.9e-81 305.4 200 74.0
ATR0787G199 Amborella trichopoda HOM05D006155 ORTHO05D007529 1.3e-79 300.4 205 69.3
HPP92_007421 Vanilla planifolia HOM05D006155 ORTHO05D007529 2.4e-78 296.2 200 69.5
Cpa.g.sc3.348 Carica papaya HOM05D006155 ORTHO05D007529 4.1e-78 295.4 198 71.7
Sc04g0004680 Simmondsia chinensis HOM05D006155 ORTHO05D007529 6.5e-76 288.1 165 78.8
SMO165G0032 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 3.1e-70 269.2 215 60.5
CDE01G0085 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 1.2e-69 267.3 231 56.7
Pp3c17_6550 Physcomitrium patens HOM05D006155 ORTHO05D007529 2.7e-66 256.1 219 56.2
Pp3c2_6750 Physcomitrium patens HOM05D006155 ORTHO05D007529 3.7e-63 245.7 217 53.5
TAR365G0649 Trochodendron aralioides HOM05D006155 ORTHO05D007529 1.1e-54 217.6 141 72.3
LjContig00022g0011299 Lotus japonicus HOM05D006155 ORTHO05D007529 6.5e-52 208.4 250 48.4
CiPaw.01G175800 Carya illinoinensis HOM05D006155 ORTHO05D007529 9.2e-46 188.0 101 82.2
MCO11G090 Micromonas commoda HOM05D006155 ORTHO05D007529 2.5e-43 179.9 214 47.7
Psat6g138760 Pisum sativum HOM05D006155 ORTHO05D007529 4.3e-43 179.1 129 65.1
AUR62035887 Chenopodium quinoa HOM05D006155 ORTHO05D007529 6.8e-41 171.8 119 73.9
Cre03.g193000 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 2.4e-38 163.3 210 43.8
SMO115G0208 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 4.1e-38 162.5 215 43.3
QL06p021877 Quercus lobata HOM05D006155 ORTHO05D007529 2.0e-37 160.2 104 71.2
SGA_v2.0_scaffold31G12610 Striga asiatica HOM05D006155 ORTHO05D007529 6.0e-37 158.7 210 43.3
Rhsim09G0043000 Rhododendron simsii HOM05D006155 ORTHO05D007529 2.6e-32 143.3 116 62.1
Hma1.2p1_0042F.1_g025660 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 3.4e-32 142.9 82 78.0
Hma1.2p1_0144F.1_g065125 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 3.4e-32 142.9 82 78.0
Zm00001eb191500 Zea mays HOM05D006155 ORTHO05D007529 3.2e-30 136.3 108 62.0
SEGI_12787 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 3.6e-26 122.9 96 63.5
Lj5g0004239 Lotus japonicus HOM05D006155 ORTHO05D007529 4.7e-26 122.5 153 45.8
Lj5g0006737 Lotus japonicus HOM05D006155 ORTHO05D007529 4.7e-26 122.5 153 45.8
Rhsim09G0041400 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.4e-25 120.9 79 72.2
SEGI_32209 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 1.2e-21 107.8 82 65.9
Actinidia37388 Actinidia chinensis HOM05D006155 ORTHO05D007529 2.1e-21 107.1 62 77.4
AUR62035886 Chenopodium quinoa HOM05D006155 ORTHO05D007529 2.3e-20 103.6 55 87.3
Rhsim09G0048000 Rhododendron simsii HOM05D000029 ORTHO05D002162 1.1e-19 101.3 85 60.0
SGA_v2.0_scaffold31G12618 Striga asiatica HOM05D006155 ORTHO05D007529 1.2e-18 97.8 188 35.6
Cre01.g025100 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 1.2e-16 91.3 216 31.5
SalBow7G2104 Salvia bowleyana HOM05D000708 ORTHO05D001418 3.2e-14 83.2 48 79.2
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 2.7e-13 80.1 185 31.4
C09p23060 Brassica napus HOM05D006155 ORTHO05D007529 2.8e-10 70.1 55 60.0


User provided reference genes

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