Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g074870 Amaranthus hybridus HOM05D005516 ORTHO05D006713 1.0e-88 330.1 172 100.0
AUR62032011 Chenopodium quinoa HOM05D005516 ORTHO05D006713 1.6e-41 173.3 162 57.4
AUR62018088 Chenopodium quinoa HOM05D005516 ORTHO05D006713 1.1e-37 160.6 104 75.0
EL10Ac3g06621 Beta vulgaris HOM05D005516 ORTHO05D006713 4.9e-35 151.8 141 58.9
Hund20712 Selenicereus undatus HOM05D005516 ORTHO05D006713 2.5e-31 139.4 106 64.2
SGA_v2.0_scaffold69G23215 Striga asiatica HOM05D000039 ORTHO05D000370 1.2e-28 130.6 144 50.7
Hund20711 Selenicereus undatus HOM05D005516 ORTHO05D006713 6.5e-27 124.8 82 70.7
Peaxi162Scf00575g00619 Petunia axillaris HOM05D005516 ORTHO05D006713 8.5e-27 124.4 92 60.9
CSS0003853 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 1.1e-26 124.0 94 64.9
Nitab4.5_0000811g0010 Nicotiana tabacum HOM05D005516 ORTHO05D006713 1.4e-26 123.6 104 58.7
Rhsim08G0097500 Rhododendron simsii HOM05D005516 ORTHO05D006713 1.4e-26 123.6 85 72.9
CSS0039228 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 2.5e-26 122.9 82 69.5
Nitab4.5_0000613g0140 Nicotiana tabacum HOM05D005516 ORTHO05D006713 3.2e-26 122.5 98 59.2
SGA_v2.0_scaffold66G22373 Striga asiatica HOM05D005516 ORTHO05D006713 4.2e-26 122.1 125 52.0
Solyc10g081380.2 Solanum lycopersicum HOM05D005516 ORTHO05D006713 9.3e-26 120.9 123 53.7
GSVIVG01029962001 Vitis vinifera HOM05D005516 ORTHO05D006713 1.2e-25 120.6 102 61.8
PSO384G4582 Papaver somniferum HOM05D005516 ORTHO05D006713 1.6e-25 120.2 101 57.4
Phvul.001G105600 Phaseolus vulgaris HOM05D005516 ORTHO05D006713 1.6e-25 120.2 93 61.3
CSS0031486 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 2.1e-25 119.8 93 64.5
PGSC0003DMG400028211 Solanum tuberosum HOM05D005516 ORTHO05D006713 2.7e-25 119.4 89 62.9
VMungo1383G1686 Vigna mungo HOM05D005516 ORTHO05D006713 3.6e-25 119.0 93 59.1
vmacro08774 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 4.6e-25 118.6 85 69.4
arahy.Tifrunner.gnm1.ann1.BMR428 Arachis hypogaea HOM05D005516 ORTHO05D006713 6.1e-25 118.2 122 52.5
MD12G1011900 Malus domestica HOM05D005516 ORTHO05D006713 6.1e-25 118.2 86 64.0
Oeu044207.1 Olea europaea HOM05D005516 ORTHO05D006713 6.1e-25 118.2 85 68.2
PSO339G3932 Papaver somniferum HOM05D005516 ORTHO05D006713 6.1e-25 118.2 101 57.4
Actinidia06205 Actinidia chinensis HOM05D005516 ORTHO05D006713 7.9e-25 117.9 149 49.7
Sc07g0007460 Simmondsia chinensis HOM05D005516 ORTHO05D006713 7.9e-25 117.9 136 49.3
Sopen10g031880 Solanum pennellii HOM05D005516 ORTHO05D006713 7.9e-25 117.9 85 63.5
Hma1.2p1_0526F.1_g172910 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 1.3e-24 117.1 82 68.3
Hma1.2p1_0526F.1_g172920 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 1.3e-24 117.1 82 68.3
Duzib128G1828 Durio zibethinus HOM05D005516 ORTHO05D006713 1.8e-24 116.7 77 68.8
Potri.013G066000 Populus trichocarpa HOM05D005516 ORTHO05D006713 1.8e-24 116.7 97 60.8
CAN.G128.137 Capsicum annuum HOM05D005516 ORTHO05D006713 2.3e-24 116.3 89 59.6
Dinv13791 Davidia involucrata HOM05D005516 ORTHO05D006713 2.3e-24 116.3 84 67.9
Gorai.013G196100 Gossypium raimondii HOM05D005516 ORTHO05D006713 2.3e-24 116.3 77 70.1
AL6G28930 Arabidopsis lyrata HOM05D005516 ORTHO05D006713 3.0e-24 115.9 100 55.0
BcaB01g04919 Brassica carinata HOM05D005516 ORTHO05D006713 3.9e-24 115.5 85 61.2
Cfa017721 Carpinus fangiana HOM05D005516 ORTHO05D006713 3.9e-24 115.5 85 67.1
Potri.019G040400 Populus trichocarpa HOM05D005516 ORTHO05D006713 3.9e-24 115.5 86 66.3
Atru.chr2.1522 Acer truncatum HOM05D005516 ORTHO05D006713 5.1e-24 115.2 84 66.7
Aa31LG11G11740 Aethionema arabicum HOM05D005516 ORTHO05D006713 5.1e-24 115.2 104 56.7
CiPaw.09G166400 Carya illinoinensis HOM05D005516 ORTHO05D006713 5.1e-24 115.2 88 64.8
FAN26G2397 Fragaria x ananassa HOM05D005516 ORTHO05D006713 5.1e-24 115.2 86 61.6
FAN23G0165 Fragaria x ananassa HOM05D005516 ORTHO05D006713 6.7e-24 114.8 86 60.5
arahy.Tifrunner.gnm1.ann1.253MNK Arachis hypogaea HOM05D005516 ORTHO05D006713 8.7e-24 114.4 122 51.6
QL07p017420 Quercus lobata HOM05D005516 ORTHO05D006713 8.7e-24 114.4 85 65.9
BcaB01g05159 Brassica carinata HOM05D005516 ORTHO05D006713 1.1e-23 114.0 85 60.0
C03p09930 Brassica napus HOM05D005516 ORTHO05D006713 1.1e-23 114.0 85 60.0
BolC3t13481H Brassica oleracea HOM05D005516 ORTHO05D006713 1.1e-23 114.0 85 60.0
BraA03t10176Z Brassica rapa HOM05D005516 ORTHO05D006713 1.1e-23 114.0 85 60.0
FvH4_1g29880 Fragaria vesca HOM05D005516 ORTHO05D006713 1.1e-23 114.0 86 60.5
FAN19G1175 Fragaria x ananassa HOM05D005516 ORTHO05D006713 1.1e-23 114.0 86 60.5
Lsat_1_v5_gn_5_154420 Lactuca sativa HOM05D005516 ORTHO05D006713 1.1e-23 114.0 87 63.2
Prupe.7G015800 Prunus persica HOM05D005516 ORTHO05D006713 1.1e-23 114.0 86 60.5
AT5G17840 Arabidopsis thaliana HOM05D005516 ORTHO05D006713 1.5e-23 113.6 85 62.4
Ca_08316_v3 Cicer arietinum L. HOM05D005516 ORTHO05D006713 1.5e-23 113.6 111 51.4
RcHm_v2.0_Chr3g0496031 Rosa chinensis HOM05D005516 ORTHO05D006713 1.5e-23 113.6 86 62.8
A03p08520 Brassica napus HOM05D005516 ORTHO05D006713 1.9e-23 113.2 85 61.2
Cc06_g21500 Coffea canephora HOM05D005516 ORTHO05D006713 1.9e-23 113.2 144 46.5
Lj1g0004780 Lotus japonicus HOM05D005516 ORTHO05D006713 1.9e-23 113.2 89 61.8
Lalb_Chr14g0364851 Lupinus albus HOM05D005516 ORTHO05D006713 1.9e-23 113.2 87 62.1
vmacro04358 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 1.9e-23 113.2 80 67.5
COL.COLO4_20092 Corchorus olitorius HOM05D005516 ORTHO05D006713 2.5e-23 112.8 86 66.3
ECA248G2342 Erigeron canadensis HOM05D005516 ORTHO05D006713 2.5e-23 112.8 82 64.6
TWI60G0181 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 2.5e-23 112.8 82 67.1
ClCG04G004680 Citrullus lanatus HOM05D005516 ORTHO05D006713 3.3e-23 112.5 80 68.8
Haze_20402 Corylus avellana HOM05D005516 ORTHO05D006713 3.3e-23 112.5 85 65.9
MELO3C008865.2 Cucumis melo HOM05D005516 ORTHO05D006713 3.3e-23 112.5 80 67.5
CsaV3_4G031610 Cucumis sativus L. HOM05D005516 ORTHO05D006713 3.3e-23 112.5 80 67.5
Glyma.16G035800 Glycine max HOM05D005516 ORTHO05D006713 3.3e-23 112.5 89 60.7
MD14G1009500 Malus domestica HOM05D005516 ORTHO05D006713 3.3e-23 112.5 86 58.1
Thecc.05G241500 Theobroma cacao HOM05D005516 ORTHO05D006713 3.3e-23 112.5 86 66.3
Thhalv10014907m.g Eutrema salsugineum HOM05D005516 ORTHO05D006713 4.3e-23 112.1 85 62.4
Sabra13G0057700 Salix brachista HOM05D005516 ORTHO05D006713 4.3e-23 112.1 124 51.6
THA.LOC104820795 Tarenaya hassleriana HOM05D005516 ORTHO05D006713 4.3e-23 112.1 82 64.6
Sed0005064 Sechium edule HOM05D005516 ORTHO05D006713 5.7e-23 111.7 80 67.5
vmacro18891 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 5.7e-23 111.7 80 66.2
Sp6g26410 Schrenkiella parvula HOM05D005516 ORTHO05D006713 7.4e-23 111.3 82 63.4
TWI32G0326 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 7.4e-23 111.3 82 65.9
C02p25840 Brassica napus HOM05D005516 ORTHO05D006713 9.7e-23 110.9 86 60.5
Duzib106G1703 Durio zibethinus HOM05D005516 ORTHO05D006713 9.7e-23 110.9 85 62.4
Eucgr.K01534 Eucalyptus grandis HOM05D005516 ORTHO05D006713 9.7e-23 110.9 111 52.3
Gorai.004G252300 Gossypium raimondii HOM05D005516 ORTHO05D006713 9.7e-23 110.9 120 52.5
HanXRQChr13g0406451 Helianthus annuus HOM05D005516 ORTHO05D006713 9.7e-23 110.9 86 59.3
Zm00001eb218270 Zea mays HOM05D005516 ORTHO05D006713 9.7e-23 110.9 90 60.0
MSTRG.6254 Avicennia marina HOM05D005516 ORTHO05D006713 1.3e-22 110.5 91 59.3
CARHR195330 Cardamine hirsuta HOM05D005516 ORTHO05D006713 1.7e-22 110.2 77 66.2
CDE07G0498 Ceratophyllum demersum HOM05D005516 ORTHO05D006713 1.7e-22 110.2 86 60.5
Glyma.19G117300 Glycine max HOM05D005516 ORTHO05D006713 1.7e-22 110.2 118 50.0
Hma1.2p1_0106F.1_g051205 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 1.7e-22 110.2 82 62.2
CANSAT78G1214 Cannabis sativa HOM05D005516 ORTHO05D006713 2.2e-22 109.8 74 68.9
Carub.0006s1607 Capsella rubella HOM05D005516 ORTHO05D006713 2.2e-22 109.8 85 60.0
MBI05_g16554_MAGBIO Magnolia biondii HOM05D005516 ORTHO05D006713 2.2e-22 109.8 126 48.4
DCAR_020653 Daucus carota HOM05D005516 ORTHO05D006713 2.8e-22 109.4 118 50.0
Duzib177G0157 Durio zibethinus HOM05D005516 ORTHO05D006713 2.8e-22 109.4 74 70.3
Zm00001eb052720 Zea mays HOM05D005516 ORTHO05D006713 2.8e-22 109.4 90 60.0
Gohir.A08G219566 Gossypium hirsutum HOM05D005516 ORTHO05D006713 3.7e-22 109.0 120 51.7
Manes.08G152800 Manihot esculenta HOM05D005516 ORTHO05D006713 3.7e-22 109.0 86 64.0
Psat3g086560 Pisum sativum HOM05D005516 ORTHO05D006713 3.7e-22 109.0 89 58.4
Nitab4.5_0000404g0040 Nicotiana tabacum HOM05D005516 ORTHO05D006713 1.1e-21 107.5 77 63.6
TPR.G34794 Trifolium pratense HOM05D005516 ORTHO05D006713 1.1e-21 107.5 77 64.9
SEGI_32239 Sequoiadendron giganteum HOM05D005516 ORTHO05D006713 1.8e-21 106.7 70 68.6
Ciclev10022543m.g Citrus clementina HOM05D005516 ORTHO05D006713 2.4e-21 106.3 82 63.4
Medtr7g086700 Medicago truncatula HOM05D005516 ORTHO05D006713 2.4e-21 106.3 70 68.6
DCAR_016961 Daucus carota HOM05D005516 ORTHO05D006713 3.1e-21 105.9 68 66.2
Os03g0656201 Oryza sativa ssp. japonica HOM05D005516 ORTHO05D006713 3.1e-21 105.9 93 57.0
Cpa.g.sc161.38 Carica papaya HOM05D005516 ORTHO05D006713 4.1e-21 105.5 87 59.8
HPP92_000977 Vanilla planifolia HOM05D005516 ORTHO05D006713 5.3e-21 105.1 96 53.1
HPP92_001001 Vanilla planifolia HOM05D005516 ORTHO05D006713 1.2e-20 104.0 96 52.1
Aqoxy1G00508 Aquilegia oxysepala HOM05D005516 ORTHO05D006713 1.4e-18 97.1 123 48.8
unitig_0.g583 Utricularia gibba HOM05D005516 ORTHO05D006713 1.2e-17 94.0 86 57.0
Gohir.A13G161100 Gossypium hirsutum HOM05D005516 ORTHO05D006713 2.1e-17 93.2 77 58.4
Gohir.D13G166400 Gossypium hirsutum HOM05D005516 ORTHO05D006713 2.1e-17 93.2 77 58.4
MSTRG.26204 Avicennia marina HOM05D005516 ORTHO05D006713 7.9e-17 91.3 97 49.5
Lalb_Chr24g0401101 Lupinus albus HOM05D005516 ORTHO05D006713 1.4e-16 90.5 61 68.9
BcaB05g23282 Brassica carinata HOM05D005516 ORTHO05D006713 3.9e-16 89.0 86 57.0
Pp3c8_890 Physcomitrium patens HOM05D005516 ORTHO05D006713 2.6e-15 86.3 108 44.4
SalBow6G3354 Salvia bowleyana HOM05D005516 ORTHO05D006713 1.3e-14 84.0 56 64.3
Mapoly0020s0169 Marchantia polymorpha HOM05D005516 ORTHO05D006713 4.8e-14 82.0 80 46.2
Actinidia07963 Actinidia chinensis HOM05D005516 ORTHO05D006713 6.3e-14 81.6 125 44.8
Peaxi162Scf00575g00620 Petunia axillaris HOM05D005516 ORTHO05D006713 1.1e-13 80.9 73 52.1
Oeu029775.1 Olea europaea HOM05D005516 ORTHO05D006713 4.1e-13 79.0 112 44.6
Gohir.A06G040900 Gossypium hirsutum HOM05D005516 ORTHO05D006713 6.9e-13 78.2 58 62.1
Gohir.D02G044500 Gossypium hirsutum HOM05D005516 ORTHO05D006713 6.9e-13 78.2 58 62.1
Gohir.D05G109301 Gossypium hirsutum HOM05D005516 ORTHO05D006713 6.9e-13 78.2 58 62.1
BcaC03g15036 Brassica carinata HOM05D005516 ORTHO05D006713 1.5e-12 77.0 63 55.6
BolC2t08658H Brassica oleracea HOM05D005516 ORTHO05D006713 1.5e-12 77.0 63 55.6
Ciclev10013836m.g Citrus clementina HOM05D005516 ORTHO05D006713 3.2e-10 69.3 59 54.2
TAR633G1766 Trochodendron aralioides HOM05D005516 ORTHO05D006713 9.4e-10 67.8 43 69.8
Sed0000674 Sechium edule HOM05D005516 ORTHO05D006713 2.6e-07 59.7 77 46.8
CBR_g28089 Chara braunii HOM05D005516 ORTHO05D006713 3.7e-06 55.8 46 54.3


User provided reference genes

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