Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 4.8e-84 314.7 187 100.0
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 5.9e-66 254.6 178 79.8
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 1.9e-64 249.6 178 77.5
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 3.3e-61 238.8 181 76.8
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 3.8e-49 198.7 180 57.8
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 2.5e-48 196.1 183 60.7
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 3.2e-48 195.7 184 58.7
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 1.2e-47 193.7 187 61.0
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 6.1e-47 191.4 185 55.7
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 1.4e-46 190.3 175 57.7
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 1.4e-46 190.3 188 60.1
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 2.3e-46 189.5 175 56.6
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 2.3e-46 189.5 187 55.6
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 4.0e-46 188.7 179 62.0
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 6.8e-46 188.0 179 55.3
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 6.8e-46 188.0 181 56.9
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 8.8e-46 187.6 181 55.8
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 1.2e-45 187.2 189 55.6
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 5.7e-45 184.9 159 60.4
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 9.8e-45 184.1 178 57.9
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 9.8e-45 184.1 179 60.9
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 2.2e-44 183.0 174 53.4
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 2.2e-44 183.0 186 58.1
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 4.9e-44 181.8 190 56.3
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 4.9e-44 181.8 184 56.0
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 6.3e-44 181.4 174 54.6
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 1.1e-43 180.6 177 53.7
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.4e-43 180.3 186 57.0
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 1.4e-43 180.3 189 52.9
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 4.1e-43 178.7 180 54.4
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 4.1e-43 178.7 186 57.5
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 9.1e-43 177.6 187 51.9
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 1.2e-42 177.2 189 55.0
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 1.6e-42 176.8 181 58.6
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 2.7e-42 176.0 194 52.1
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 4.5e-42 175.3 185 51.9
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 5.9e-42 174.9 184 55.4
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 7.7e-42 174.5 177 51.4
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 1.3e-41 173.7 177 51.4
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 5.0e-41 171.8 188 56.9
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 6.6e-41 171.4 180 51.7
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 6.6e-41 171.4 181 53.6
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 6.6e-41 171.4 181 53.6
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 8.6e-41 171.0 189 50.8
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 1.1e-40 170.6 190 50.5
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 1.1e-40 170.6 181 56.9
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.1e-40 170.6 181 56.9
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.1e-40 170.6 181 56.9
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 1.5e-40 170.2 181 51.4
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 1.9e-40 169.9 182 50.5
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 3.3e-40 169.1 177 53.1
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 5.6e-40 168.3 179 55.9
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 7.2e-40 167.9 177 54.8
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 7.2e-40 167.9 191 51.3
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 2.1e-39 166.4 192 49.0
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 6.1e-39 164.9 197 51.3
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 6.1e-39 164.9 178 52.8
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 3.0e-38 162.5 174 51.1
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 5.2e-38 161.8 181 54.7
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 8.9e-38 161.0 186 48.4
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 8.9e-38 161.0 185 49.7
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 1.2e-37 160.6 185 54.1
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 1.5e-37 160.2 183 50.8
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 1.5e-37 160.2 177 50.8
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 7.5e-37 157.9 182 53.3
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 9.8e-37 157.5 176 53.4
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 9.8e-37 157.5 173 53.8
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 1.3e-36 157.1 182 54.4
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 1.7e-36 156.8 180 52.8
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 2.9e-36 156.0 180 49.4
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 3.7e-36 155.6 180 49.4
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 4.9e-36 155.2 174 50.6
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 6.4e-36 154.8 183 52.5
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 8.3e-36 154.5 206 45.6
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 8.3e-36 154.5 191 49.2
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 1.4e-35 153.7 180 51.7
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 1.8e-35 153.3 176 51.7
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 9.2e-35 151.0 182 47.8
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 9.2e-35 151.0 179 49.7
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 9.2e-35 151.0 200 49.5
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 2.0e-34 149.8 173 52.0
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 7.8e-34 147.9 186 48.9
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 1.0e-33 147.5 184 47.8
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.5e-32 143.7 172 49.4
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 1.5e-32 143.7 172 49.4
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 1.9e-32 143.3 182 51.1
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 3.3e-32 142.5 189 43.9
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 4.3e-32 142.1 187 46.0
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 4.3e-32 142.1 184 47.8
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 5.6e-32 141.7 185 51.9
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 5.6e-32 141.7 170 47.6
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 7.3e-32 141.4 172 48.8
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 2.8e-31 139.4 174 50.6
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 1.0e-30 137.5 185 50.8
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 1.0e-30 137.5 185 50.8
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.4e-30 137.1 183 51.9
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 4.0e-30 135.6 185 52.4
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 8.9e-30 134.4 184 51.1
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 8.9e-30 134.4 184 51.1
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 1.5e-29 133.7 204 44.1
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 1.7e-28 130.2 202 45.5
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 1.7e-28 130.2 169 49.1
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 4.9e-28 128.6 194 44.8
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 6.4e-28 128.3 174 44.8
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 1.1e-27 127.5 181 47.0
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 4.1e-27 125.6 195 47.2
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 2.0e-26 123.2 178 45.5
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 2.0e-26 123.2 178 45.5
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 2.0e-26 123.2 186 43.0
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 2.0e-26 123.2 175 45.1
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 3.5e-26 122.5 190 42.6
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 4.6e-26 122.1 176 43.2
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 4.6e-26 122.1 178 47.2
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 1.3e-25 120.6 200 42.0
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.7e-25 120.2 201 41.8
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 2.3e-25 119.8 176 42.6
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 2.3e-25 119.8 178 44.4
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 2.3e-25 119.8 178 44.4
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 2.3e-25 119.8 178 44.4
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 6.6e-25 118.2 215 43.3
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 6.6e-25 118.2 215 43.3
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 1.9e-24 116.7 176 42.6
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 3.3e-24 115.9 195 44.6
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 4.3e-24 115.5 172 41.9
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 9.5e-24 114.4 110 55.5
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 1.2e-23 114.0 220 42.7
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 1.6e-23 113.6 200 40.0
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 1.6e-23 113.6 198 43.4
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 3.6e-23 112.5 218 42.2
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 3.1e-22 109.4 199 40.2
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 1.5e-21 107.1 203 39.4
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 5.4e-19 98.6 55 78.2
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 9.2e-19 97.8 168 40.5
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 4.6e-18 95.5 96 53.1
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 4.6e-18 95.5 169 34.9
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 6.0e-18 95.1 177 37.3
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 4.3e-16 89.0 172 36.0
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 5.6e-16 88.6 58 79.3
CDE02G1545 Ceratophyllum demersum HOM05D006941 ORTHO05D008361 2.1e-15 86.7 144 46.5
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 1.8e-14 83.6 78 51.3
Nitab4.5_0001097g0130 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.2e-13 80.9 151 35.1
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 2.0e-13 80.1 157 42.0
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 3.7e-12 75.9 209 32.1
Actinidia00002 Actinidia chinensis HOM05D005099 ORTHO05D006087 1.4e-11 73.9 40 80.0
Manes.04G151400 Manihot esculenta HOM05D008031 ORTHO05D010063 9.2e-11 71.2 169 32.0
Atru.chr1.4165 Acer truncatum HOM05D008031 ORTHO05D010063 3.5e-10 69.3 170 33.5
TAR626G1534 Trochodendron aralioides HOM05D008031 ORTHO05D010063 6.0e-10 68.6 170 32.9
Peaxi162Scf00038g02327 Petunia axillaris HOM05D008031 ORTHO05D010063 1.7e-09 67.0 170 32.9
Nitab4.5_0006338g0010 Nicotiana tabacum HOM05D008031 ORTHO05D010063 8.6e-09 64.7 169 28.4
Lalb_Chr15g0086051 Lupinus albus HOM05D005099 ORTHO05D006087 1.1e-08 64.3 80 43.8
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 3.3e-08 62.8 176 34.1
Solyc03g123670.3 Solanum lycopersicum HOM05D008031 ORTHO05D010063 3.3e-08 62.8 173 27.7
arahy.Tifrunner.gnm1.ann1.8JA41T Arachis hypogaea HOM05D008031 ORTHO05D010063 4.3e-08 62.4 164 29.3
Lalb_Chr10g0101091 Lupinus albus HOM05D008031 ORTHO05D010063 4.3e-08 62.4 174 29.3
arahy.Tifrunner.gnm1.ann1.CKB8X1 Arachis hypogaea HOM05D008031 ORTHO05D010063 1.2e-07 60.8 166 30.1
GSVIVG01016662001 Vitis vinifera HOM05D008031 ORTHO05D010063 2.1e-07 60.1 178 30.3
Glyma.07G046300 Glycine max HOM05D008031 ORTHO05D010063 2.8e-07 59.7 172 31.4
Sopen03g041440 Solanum pennellii HOM05D008031 ORTHO05D010063 3.6e-07 59.3 173 27.2
Actinidia21841 Actinidia chinensis HOM05D008031 ORTHO05D010063 4.7e-07 58.9 173 32.9
Zm00001eb346420 Zea mays HOM05D042790 ORTHO05D049961 8.1e-07 58.2 181 35.4
arahy.Tifrunner.gnm1.ann1.PVL51W Arachis hypogaea HOM05D008031 ORTHO05D010063 1.8e-06 57.0 166 30.1
Potri.001G162100 Populus trichocarpa HOM05D008031 ORTHO05D010063 1.8e-06 57.0 176 31.2
Atru.chr1.4161 Acer truncatum HOM05D008031 ORTHO05D010063 2.4e-06 56.6 177 33.3
Nn4g25860 Nelumbo nucifera HOM05D005099 ORTHO05D006087 2.4e-06 56.6 84 47.6
Phvul.010G122700 Phaseolus vulgaris HOM05D008031 ORTHO05D010063 3.1e-06 56.2 173 29.5
PGSC0003DMG400009151 Solanum tuberosum HOM05D008031 ORTHO05D010063 3.1e-06 56.2 173 27.2


User provided reference genes

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