Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 0.0e+00 1724.5 854 100.0
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 0.0e+00 1312.7 817 81.4
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 0.0e+00 1307.7 866 77.0
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1112.1 847 68.1
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 4.1e-311 1071.2 867 65.2
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 5.3e-311 1070.8 866 65.0
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 5.3e-311 1070.8 868 64.9
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 1.5e-310 1069.3 833 66.7
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 4.4e-310 1067.8 873 64.6
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 3.5e-307 1058.1 881 65.2
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 6.0e-307 1057.4 878 64.2
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 3.9e-306 1054.7 863 63.8
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 3.9e-306 1054.7 877 64.7
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 6.6e-306 1053.9 754 71.4
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.9e-305 1052.4 902 62.3
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 3.3e-305 1051.6 878 63.7
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 3.6e-304 1048.1 877 64.4
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 6.2e-304 1047.3 845 66.4
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 2.3e-303 1045.4 881 64.5
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 3.1e-303 1045.0 860 64.0
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 2.9e-301 1038.5 858 64.0
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 4.9e-301 1037.7 869 64.1
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 6.4e-301 1037.3 869 63.5
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 6.4e-301 1037.3 879 63.7
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 8.4e-301 1036.9 869 63.5
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 2.4e-300 1035.4 846 64.9
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 4.1e-300 1034.6 898 62.0
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 2.7e-299 1031.9 915 61.5
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 4.6e-299 1031.2 863 63.5
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 7.8e-299 1030.4 869 63.3
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 7.8e-299 1030.4 831 65.8
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 1.0e-298 1030.0 874 63.0
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 3.0e-298 1028.5 831 65.7
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 1.5e-297 1026.2 831 65.5
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 1.6e-296 1022.7 852 64.4
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 3.6e-296 1021.5 854 64.2
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 6.2e-296 1020.8 857 63.4
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 1.1e-295 1020.0 876 62.2
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 5.2e-295 1017.7 869 62.8
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 2.6e-294 1015.4 870 61.6
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 3.4e-294 1015.0 878 62.5
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 7.6e-294 1013.8 866 62.1
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 7.6e-294 1013.8 866 62.1
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 2.7e-291 1005.4 875 61.1
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 6.0e-291 1004.2 907 60.4
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 1.7e-290 1002.7 859 63.3
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 3.0e-290 1001.9 818 64.5
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 3.9e-290 1001.5 857 62.0
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 8.7e-290 1000.3 857 62.5
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 1.1e-289 1000.0 870 62.4
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 1.9e-289 999.2 851 62.7
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 9.0e-287 990.3 866 61.0
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 1.2e-286 989.9 874 60.9
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 7.6e-286 987.3 874 61.0
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 8.4e-285 983.8 875 60.5
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 1.7e-282 976.1 901 59.7
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 1.5e-281 973.0 878 60.7
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 2.1e-280 969.1 861 61.6
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 5.3e-279 964.5 1015 54.0
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 2.6e-278 962.2 877 60.3
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 4.5e-278 961.4 819 62.1
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 1.3e-277 959.9 857 59.9
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 5.1e-274 948.0 863 60.8
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 1.1e-273 946.8 886 58.9
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 6.9e-271 937.6 878 59.2
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 2.9e-269 932.2 875 58.4
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 1.4e-268 929.9 859 59.7
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 4.6e-267 924.9 844 59.7
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 1.0e-266 923.7 803 62.1
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 1.3e-266 923.3 933 56.3
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 3.7e-264 915.2 849 59.0
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 3.1e-263 912.1 817 60.7
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 1.0e-261 907.1 958 54.0
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 5.0e-261 904.8 873 58.2
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 1.6e-256 889.8 832 58.8
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 1.4e-255 886.7 815 58.9
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 2.9e-253 879.0 832 58.2
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 1.1e-252 877.1 830 57.7
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 1.9e-252 876.3 831 58.0
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 4.2e-252 875.2 834 58.0
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 4.6e-251 871.7 821 58.1
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 1.4e-250 870.2 832 57.9
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 3.0e-250 869.0 855 55.3
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 8.8e-250 867.5 815 57.2
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 4.8e-248 861.7 831 57.4
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 8.2e-248 860.9 885 55.9
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 3.6e-243 845.5 825 56.7
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 6.1e-243 844.7 831 56.4
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 7.9e-243 844.3 832 57.1
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 7.9e-243 844.3 832 57.1
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 7.9e-243 844.3 831 56.6
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 1.1e-236 823.9 824 56.6
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 3.8e-229 798.9 859 52.2
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 1.2e-225 787.3 760 57.4
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 3.7e-200 702.6 762 54.2
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 1.8e-194 683.7 698 54.7
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 4.1e-191 672.5 479 72.7
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.6e-187 660.6 932 45.1
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.2e-182 644.4 933 43.4
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 4.3e-172 609.4 869 44.4
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 2.6e-169 600.1 500 63.2
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.3e-155 554.7 404 71.0
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 4.8e-155 552.7 860 41.3
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 2.7e-142 510.4 374 70.9
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 1.1e-138 498.4 539 52.7
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 1.1e-138 498.4 417 63.8
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 6.5e-120 436.0 412 56.8
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 6.1e-118 429.5 466 53.2
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.6e-113 414.8 397 58.7
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.2e-92 345.5 270 65.6
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 7.8e-89 332.8 232 70.3
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 1.4e-77 295.4 162 85.2
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 2.9e-75 287.7 834 30.1
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 3.2e-74 284.3 151 88.1
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.9e-71 275.0 375 45.9
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.6e-65 255.4 556 35.4
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.6e-65 255.4 556 35.4
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 2.5e-63 248.1 145 83.4
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 5.6e-63 246.9 289 50.5
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 9.6e-63 246.1 137 83.2
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 3.8e-59 234.2 193 64.8
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 4.9e-59 233.8 137 78.1
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 1.3e-48 199.1 187 61.5
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.3e-48 199.1 117 74.4
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 8.7e-48 196.4 814 25.8
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 5.6e-47 193.7 235 43.0
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 3.8e-27 127.9 270 30.7
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 3.9e-24 117.9 129 49.6
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 1.3e-22 112.8 156 39.1
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 9.1e-21 106.7 73 69.9
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 3.3e-15 88.2 129 40.3
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.4e-15 87.8 58 79.3
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 1.3e-14 86.3 58 65.5
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.7e-14 85.9 56 80.4
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.7e-14 85.9 56 80.4
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.7e-14 85.9 56 80.4
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.7e-14 85.9 56 80.4
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.7e-14 85.9 56 80.4
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.7e-14 85.9 56 80.4
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.7e-14 85.9 56 80.4
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.7e-14 85.9 56 80.4
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.7e-14 85.9 56 80.4
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.7e-14 85.9 56 80.4
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.7e-14 85.9 56 80.4
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 2.2e-14 85.5 217 27.2
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 7.7e-12 77.0 118 39.8
HanXRQChr12g0372601 Helianthus annuus HOM05D005283 ORTHO05D006769 2.9e-11 75.1 55 67.3
HanXRQChr14g0449221 Helianthus annuus HOM05D005283 ORTHO05D006769 1.4e-10 72.8 58 60.3
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 1.6e-09 69.3 33 87.9
AUR62027688 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.1e-09 68.9 88 51.1
AUR62008643 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.7e-09 67.8 40 80.0
AUR62008556 Chenopodium quinoa HOM05D002461 ORTHO05D000898 8.8e-08 63.5 36 83.3
AUR62013764 Chenopodium quinoa HOM05D002461 ORTHO05D000898 8.8e-08 63.5 36 83.3
AUR62038642 Chenopodium quinoa HOM05D002461 ORTHO05D000898 8.8e-08 63.5 36 83.3
AUR62020656 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.1e-07 63.2 35 85.7
AUR62044062 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.7e-07 60.8 34 85.3
AUR62044283 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.7e-07 60.8 34 85.3


User provided reference genes

Program Settings