Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 5.1e-173 610.9 297 100.0
Dinv38311 Davidia involucrata HOM05D007775 ORTHO05D009858 3.9e-64 249.2 295 46.1
GSVIVG01017782001 Vitis vinifera HOM05D007775 ORTHO05D009858 8.8e-64 248.1 261 52.1
Cfa015361 Carpinus fangiana HOM05D007775 ORTHO05D009858 7.4e-63 245.0 269 49.1
TWI09G0118 Tripterygium wilfordii HOM05D007775 ORTHO05D009858 8.2e-62 241.5 271 49.4
FvH4_4g17570 Fragaria vesca HOM05D007775 ORTHO05D009858 5.3e-61 238.8 269 49.8
RcHm_v2.0_Chr4g0421471 Rosa chinensis HOM05D007775 ORTHO05D009858 5.3e-61 238.8 269 48.7
Rhsim04G0218300 Rhododendron simsii HOM05D007775 ORTHO05D009858 9.1e-61 238.0 270 47.8
Prupe.1G140100 Prunus persica HOM05D007775 ORTHO05D009858 2.6e-60 236.5 268 47.0
CiPaw.02G085200 Carya illinoinensis HOM05D007775 ORTHO05D009858 4.5e-60 235.7 265 48.3
Thecc.04G279800 Theobroma cacao HOM05D007775 ORTHO05D009858 4.5e-60 235.7 291 47.8
Cc03_g02150 Coffea canephora HOM05D007775 ORTHO05D009858 5.9e-60 235.3 297 45.5
COL.COLO4_13909 Corchorus olitorius HOM05D007775 ORTHO05D009858 1.3e-59 234.2 289 47.8
FAN07G2931 Fragaria x ananassa HOM05D007775 ORTHO05D009858 1.3e-59 234.2 269 49.8
Nn3g16301 Nelumbo nucifera HOM05D007775 ORTHO05D009858 2.2e-59 233.4 280 46.1
Potri.008G215200 Populus trichocarpa HOM05D007775 ORTHO05D009858 2.9e-59 233.0 275 47.3
TAR362G1316 Trochodendron aralioides HOM05D007775 ORTHO05D009858 2.9e-59 233.0 277 47.7
QL06p007731 Quercus lobata HOM05D007775 ORTHO05D009858 2.5e-58 229.9 296 45.3
Solyc06g054580.4 Solanum lycopersicum HOM05D007775 ORTHO05D009858 5.5e-58 228.8 287 48.1
Sopen06g019650 Solanum pennellii HOM05D007775 ORTHO05D009858 7.2e-58 228.4 274 48.5
MD13G1171700 Malus domestica HOM05D007775 ORTHO05D009858 2.1e-57 226.9 273 46.9
PGSC0003DMG400030783 Solanum tuberosum HOM05D007775 ORTHO05D009858 2.7e-57 226.5 274 48.5
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 4.7e-57 225.7 269 47.2
THA.LOC104820248 Tarenaya hassleriana HOM05D007775 ORTHO05D009858 1.4e-56 224.2 297 44.4
Sabra08G0155600 Salix brachista HOM05D007775 ORTHO05D009858 2.3e-56 223.4 291 46.0
Actinidia40242 Actinidia chinensis HOM05D007775 ORTHO05D009858 5.1e-56 222.2 290 43.4
AT2G39100 Arabidopsis thaliana HOM05D007775 ORTHO05D009858 8.8e-56 221.5 292 44.2
Lj6A671T60 Lonicera japonica HOM05D007775 ORTHO05D009858 2.8e-54 216.5 255 47.5
PGR031G0649 Punica granatum HOM05D007775 ORTHO05D009858 3.7e-54 216.1 273 46.9
Sp4g21450 Schrenkiella parvula HOM05D007775 ORTHO05D009858 1.1e-53 214.5 282 45.0
ClCG06G005300 Citrullus lanatus HOM05D007775 ORTHO05D009858 1.8e-53 213.8 266 46.2
Gohir.D10G168200 Gossypium hirsutum HOM05D007775 ORTHO05D009858 1.8e-53 213.8 269 48.3
MBI19_g01943_MAGBIO Magnolia biondii HOM05D007775 ORTHO05D009858 2.4e-53 213.4 301 43.9
Carub.0004s2115 Capsella rubella HOM05D007775 ORTHO05D009858 4.1e-53 212.6 267 42.3
MELO3C021348.2 Cucumis melo HOM05D007775 ORTHO05D009858 9.1e-53 211.5 265 45.7
CsaV3_6G017340 Cucumis sativus L. HOM05D007775 ORTHO05D009858 1.2e-52 211.1 266 45.5
Gorai.011G187800 Gossypium raimondii HOM05D007775 ORTHO05D009858 1.2e-52 211.1 271 46.9
Lsat_1_v5_gn_5_52881 Lactuca sativa HOM05D007775 ORTHO05D009858 1.2e-52 211.1 265 46.4
Cpa.g.sc197.12 Carica papaya HOM05D007775 ORTHO05D009858 2.0e-52 210.3 265 48.3
Aa31LG5G20500 Aethionema arabicum HOM05D007775 ORTHO05D009858 2.6e-52 209.9 302 41.4
Thhalv10017000m.g Eutrema salsugineum HOM05D007775 ORTHO05D009858 3.5e-52 209.5 278 44.2
Eucgr.B01278 Eucalyptus grandis HOM05D007775 ORTHO05D009858 1.0e-51 208.0 297 44.8
BraA04t18439Z Brassica rapa HOM05D007775 ORTHO05D009858 2.2e-51 206.8 269 44.2
Manes.15G015200 Manihot esculenta HOM05D007775 ORTHO05D009858 2.2e-51 206.8 266 45.9
FAN12G2546 Fragaria x ananassa HOM05D007775 ORTHO05D009858 3.8e-51 206.1 247 48.2
PSO210G6602 Papaver somniferum HOM05D007775 ORTHO05D009858 3.8e-51 206.1 300 42.0
Atru.chr4.2786 Acer truncatum HOM05D007775 ORTHO05D009858 6.5e-51 205.3 276 44.9
CARHR133870 Cardamine hirsuta HOM05D007775 ORTHO05D009858 6.5e-51 205.3 267 43.4
C04p67030 Brassica napus HOM05D007775 ORTHO05D009858 1.9e-50 203.8 278 42.8
CANSAT78G0244 Cannabis sativa HOM05D007775 ORTHO05D009858 1.9e-50 203.8 276 44.2
BolC4t28205H Brassica oleracea HOM05D007775 ORTHO05D009858 1.2e-49 201.1 280 42.1
CAN.G256.16 Capsicum annuum HOM05D007775 ORTHO05D009858 1.6e-49 200.7 269 46.1
HanXRQChr03g0080871 Helianthus annuus HOM05D007775 ORTHO05D009858 2.1e-49 200.3 293 43.3
Lalb_Chr13g0303771 Lupinus albus HOM05D007775 ORTHO05D009858 2.1e-49 200.3 291 41.9
Nitab4.5_0001459g0060 Nicotiana tabacum HOM05D007775 ORTHO05D009858 4.7e-49 199.1 249 47.8
Duzib151G1205 Durio zibethinus HOM05D007775 ORTHO05D009858 2.3e-48 196.8 270 45.6
Peaxi162Scf00033g01324 Petunia axillaris HOM05D007775 ORTHO05D009858 3.0e-48 196.4 274 43.8
Nitab4.5_0002148g0040 Nicotiana tabacum HOM05D007775 ORTHO05D009858 6.7e-48 195.3 255 48.2
arahy.Tifrunner.gnm1.ann1.J8QG6N Arachis hypogaea HOM05D007775 ORTHO05D009858 1.5e-47 194.1 282 42.6
arahy.Tifrunner.gnm1.ann1.KJPE0P Arachis hypogaea HOM05D007775 ORTHO05D009858 9.7e-47 191.4 295 40.7
DCAR_024553 Daucus carota HOM05D007775 ORTHO05D009858 1.7e-46 190.7 233 46.4
Sed0017003 Sechium edule HOM05D007775 ORTHO05D009858 6.3e-46 188.7 255 42.7
ECA240G4119 Erigeron canadensis HOM05D007775 ORTHO05D009858 1.8e-45 187.2 253 44.7
Oeu021116.1 Olea europaea HOM05D007775 ORTHO05D009858 7.0e-45 185.3 277 42.2
Gohir.A10G161700 Gossypium hirsutum HOM05D007775 ORTHO05D009858 2.9e-43 179.9 273 44.3
Sc06g0007440 Simmondsia chinensis HOM05D007775 ORTHO05D009858 6.5e-43 178.7 266 40.6
A04p29770 Brassica napus HOM05D007775 ORTHO05D009858 1.2e-39 167.9 207 45.4
AL4G36400 Arabidopsis lyrata HOM05D007775 ORTHO05D009858 2.7e-33 146.7 208 43.8
Aqoxy2G03074 Aquilegia oxysepala HOM05D007775 ORTHO05D009858 8.8e-32 141.7 231 39.0
BcaC02g12905 Brassica carinata HOM05D007775 ORTHO05D009858 9.8e-31 138.3 214 40.2
SMO147G0036 Selaginella moellendorffii HOM05D007775 ORTHO05D009858 9.1e-29 131.7 317 30.9
ATR0706G202 Amborella trichopoda HOM05D007775 ORTHO05D009858 5.9e-28 129.0 218 41.7
Pp3c21_11960 Physcomitrium patens HOM05D007775 ORTHO05D009858 7.2e-26 122.1 312 30.4
FAN12G2785 Fragaria x ananassa HOM05D007775 ORTHO05D009858 4.0e-24 116.3 174 42.5
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 1.5e-23 114.4 153 44.4
vmacro08108 Vaccinium macrocarpon HOM05D007775 ORTHO05D009858 2.0e-23 114.0 91 58.2
AL92U10060 Arabidopsis lyrata HOM05D007775 ORTHO05D009858 1.1e-21 108.2 175 40.0
QL06p007898 Quercus lobata HOM05D007775 ORTHO05D009858 3.9e-19 99.8 125 48.0
SEGI_15450 Sequoiadendron giganteum HOM05D007775 ORTHO05D009858 1.6e-17 94.4 127 40.2
CSS0035717 Camellia sinensis var. sinensis HOM05D007775 ORTHO05D009858 1.0e-16 91.7 77 58.4
CSS0050081 Camellia sinensis var. sinensis HOM05D007775 ORTHO05D009858 1.4e-16 91.3 78 56.4
CSS0036115 Camellia sinensis var. sinensis HOM05D007775 ORTHO05D009858 3.4e-15 86.7 77 57.1
Prupe.8G004900 Prunus persica HOM05D007775 ORTHO05D009858 3.7e-14 83.2 98 43.9
MSTRG.10078 Avicennia marina HOM05D007775 ORTHO05D009858 3.6e-09 66.6 59 47.5
Psat6g149480 Pisum sativum HOM05D006625 ORTHO05D008060 6.8e-08 62.4 266 23.7
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 3.4e-07 60.1 59 45.8
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 4.4e-07 59.7 48 50.0
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 4.4e-07 59.7 51 51.0
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 5.8e-07 59.3 48 52.1
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 5.8e-07 59.3 51 49.0
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 7.5e-07 58.9 48 50.0
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 7.5e-07 58.9 48 50.0
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 9.8e-07 58.5 51 49.0
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 9.8e-07 58.5 48 50.0
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 9.8e-07 58.5 48 50.0
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 9.8e-07 58.5 48 52.1
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 1.3e-06 58.2 94 36.2
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 1.7e-06 57.8 51 49.0
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 1.7e-06 57.8 51 49.0
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 1.7e-06 57.8 51 49.0
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 1.7e-06 57.8 51 49.0
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 1.7e-06 57.8 51 49.0
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 1.7e-06 57.8 51 49.0
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 1.7e-06 57.8 51 49.0
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 1.7e-06 57.8 51 49.0
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 1.7e-06 57.8 51 49.0
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 1.7e-06 57.8 48 50.0
PGR031G0551 Punica granatum HOM05D006625 ORTHO05D008060 1.7e-06 57.8 278 22.3
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.7e-06 57.8 51 49.0
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 2.2e-06 57.4 51 49.0
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 2.2e-06 57.4 51 49.0
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 2.2e-06 57.4 48 50.0
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 2.2e-06 57.4 48 50.0
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 2.9e-06 57.0 59 42.4
Pp3c3_27350 Physcomitrium patens HOM05D006625 ORTHO05D008060 2.9e-06 57.0 278 22.7
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 2.9e-06 57.0 59 42.4
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 2.9e-06 57.0 59 42.4
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 2.9e-06 57.0 59 42.4
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 3.7e-06 56.6 48 50.0
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 3.7e-06 56.6 48 47.9
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 3.7e-06 56.6 59 44.1
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 3.7e-06 56.6 51 47.1
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 3.7e-06 56.6 46 52.2
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 3.7e-06 56.6 46 52.2
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 3.7e-06 56.6 59 44.1
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 4.9e-06 56.2 59 44.1
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 4.9e-06 56.2 48 47.9
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 4.9e-06 56.2 48 47.9
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 4.9e-06 56.2 51 47.1
Ca_10103_v3 Cicer arietinum L. HOM05D006625 ORTHO05D008060 4.9e-06 56.2 306 23.2
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 4.9e-06 56.2 60 43.3
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 4.9e-06 56.2 60 43.3
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 4.9e-06 56.2 60 43.3
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 4.9e-06 56.2 60 41.7
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 6.4e-06 55.8 59 44.1
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 6.4e-06 55.8 59 44.1
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 6.4e-06 55.8 59 44.1
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 8.3e-06 55.5 49 46.9
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 8.3e-06 55.5 51 47.1
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 8.3e-06 55.5 62 40.3
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 8.3e-06 55.5 51 47.1


User provided reference genes

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