Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g074010 Amaranthus hybridus HOM05D006503 ORTHO05D008116 2.6e-192 676.4 787 100.0
AUR62038078 Chenopodium quinoa HOM05D006503 ORTHO05D008116 3.8e-74 283.9 737 76.5
AUR62038172 Chenopodium quinoa HOM05D006503 ORTHO05D008116 2.7e-59 234.6 699 77.7
Sc13g0001660 Simmondsia chinensis HOM05D006503 ORTHO05D008116 4.0e-47 194.1 730 71.8
CSS0000010 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 2.7e-43 181.4 727 71.5
CiPaw.15G110400 Carya illinoinensis HOM05D006503 ORTHO05D008116 7.8e-43 179.9 312 49.4
QL04p096113 Quercus lobata HOM05D006503 ORTHO05D008116 8.6e-42 176.4 721 68.0
Thecc.09G181100 Theobroma cacao HOM05D006503 ORTHO05D008116 2.1e-40 171.8 724 67.7
Lju124C42T22 Lonicera japonica HOM05D006503 ORTHO05D008116 3.6e-40 171.0 739 64.3
Dinv36159 Davidia involucrata HOM05D006503 ORTHO05D008116 3.1e-39 167.9 320 47.8
Cfa017777 Carpinus fangiana HOM05D006503 ORTHO05D008116 4.0e-39 167.5 732 65.7
Manes.09G020600 Manihot esculenta HOM05D006503 ORTHO05D008116 7.5e-38 163.3 731 70.2
QL04p096294 Quercus lobata HOM05D006503 ORTHO05D008116 4.9e-37 160.6 724 66.9
Actinidia38544 Actinidia chinensis HOM05D006503 ORTHO05D008116 9.2e-36 156.4 321 54.8
MSTRG.6424 Avicennia marina HOM05D006503 ORTHO05D008116 1.2e-35 156.0 320 45.6
Atru.BG.180.p Acer truncatum HOM05D006503 ORTHO05D008116 1.6e-35 155.6 718 49.9
Ciclev10004347m.g Citrus clementina HOM05D006503 ORTHO05D008116 2.0e-35 155.2 724 66.9
Migut.J01751 Erythranthe guttata HOM05D006503 ORTHO05D008116 2.0e-35 155.2 321 45.8
Oeu016352.1 Olea europaea HOM05D006503 ORTHO05D008116 2.0e-35 155.2 315 46.0
Duzib150G0906 Durio zibethinus HOM05D006503 ORTHO05D008116 2.7e-35 154.8 727 67.5
Potri.006G049400 Populus trichocarpa HOM05D006503 ORTHO05D008116 1.3e-34 152.5 724 66.7
TWI77G0486 Tripterygium wilfordii HOM05D006503 ORTHO05D008116 3.9e-34 151.0 311 44.4
Cc06_g17640 Coffea canephora HOM05D006503 ORTHO05D008116 5.0e-34 150.6 740 62.8
Hma1.2p1_1041F.1_g251090 Hydrangea macrophylla HOM05D006503 ORTHO05D008116 5.0e-34 150.6 714 61.8
COL.COLO4_08106 Corchorus olitorius HOM05D006503 ORTHO05D008116 8.6e-34 149.8 718 65.6
Sed0013522 Sechium edule HOM05D006503 ORTHO05D008116 1.5e-33 149.1 315 44.4
Rhsim04G0102600 Rhododendron simsii HOM05D006503 ORTHO05D008116 2.5e-33 148.3 735 68.2
SalBow6G5105 Salvia bowleyana HOM05D006503 ORTHO05D008116 2.5e-33 148.3 314 44.6
Peaxi162Scf00020g00194 Petunia axillaris HOM05D006503 ORTHO05D008116 2.1e-32 145.2 313 46.3
RcHm_v2.0_Chr5g0022901 Rosa chinensis HOM05D006503 ORTHO05D008116 1.8e-31 142.1 726 64.7
MD05G1241300 Malus domestica HOM05D006503 ORTHO05D008116 6.8e-31 140.2 315 44.4
CAN.G1274.14 Capsicum annuum HOM05D006503 ORTHO05D008116 1.5e-30 139.0 313 44.1
Nitab4.5_0002332g0010 Nicotiana tabacum HOM05D006503 ORTHO05D008116 3.4e-30 137.9 653 70.3
TAR633G2684 Trochodendron aralioides HOM05D000623 ORTHO05D008116 3.4e-30 137.9 639 73.9
FvH4_3g13661 Fragaria vesca HOM05D006503 ORTHO05D008116 5.8e-30 137.1 313 51.8
Sabra06G0034600 Salix brachista HOM05D006503 ORTHO05D008116 5.8e-30 137.1 714 60.1
Carub.0002s2640 Capsella rubella HOM05D006503 ORTHO05D008116 1.3e-29 136.0 317 46.7
GSVIVG01033259001 Vitis vinifera HOM05D006503 ORTHO05D008116 2.9e-29 134.8 644 60.7
Sopen02g028560 Solanum pennellii HOM05D006503 ORTHO05D008116 4.9e-29 134.0 722 67.9
Prupe.4G124200 Prunus persica HOM05D006503 ORTHO05D008116 8.3e-29 133.3 315 43.5
TAR629G2271 Trochodendron aralioides HOM05D006503 ORTHO05D008116 8.3e-29 133.3 227 54.2
Actinidia17234 Actinidia chinensis HOM05D006503 ORTHO05D008116 3.2e-28 131.3 123 50.4
PGSC0003DMG401003570 Solanum tuberosum HOM05D006503 ORTHO05D008116 5.4e-28 130.6 722 67.6
CSS0042104 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 9.2e-28 129.8 123 50.4
AT1G79540 Arabidopsis thaliana HOM05D006503 ORTHO05D008116 3.5e-27 127.9 730 56.0
ECA248G2018 Erigeron canadensis HOM05D006503 ORTHO05D008116 4.6e-27 127.5 321 41.7
vmacro09073 Vaccinium macrocarpon HOM05D006503 ORTHO05D008116 6.0e-27 127.1 241 52.3
HanXRQChr13g0395951 Helianthus annuus HOM05D006503 ORTHO05D008116 7.8e-27 126.7 322 41.3
CANSAT21G0513 Cannabis sativa HOM05D006503 ORTHO05D008116 1.7e-26 125.6 726 64.7
Gohir.D04G006500 Gossypium hirsutum HOM05D006503 ORTHO05D008116 1.7e-26 125.6 123 49.6
Gorai.012G007700 Gossypium raimondii HOM05D006503 ORTHO05D008116 1.7e-26 125.6 123 49.6
Nn5g26957 Nelumbo nucifera HOM05D006503 ORTHO05D008116 1.7e-26 125.6 724 69.9
Gohir.A05G408900 Gossypium hirsutum HOM05D006503 ORTHO05D008116 2.3e-26 125.2 123 49.6
Aa31LG4G1470 Aethionema arabicum HOM05D006503 ORTHO05D008116 6.6e-26 123.6 726 55.5
Lsat_1_v5_gn_5_161280 Lactuca sativa HOM05D006503 ORTHO05D008116 8.6e-26 123.2 298 39.9
Nitab4.5_0000051g0090 Nicotiana tabacum HOM05D006503 ORTHO05D008116 1.1e-25 122.9 128 46.9
TAR633G2474 Trochodendron aralioides HOM05D006503 ORTHO05D008116 1.5e-25 122.5 128 45.3
Lj6g0025212 Lotus japonicus HOM05D006503 ORTHO05D008116 1.9e-25 122.1 300 53.3
SHI16040 Sapria himalayana HOM05D006503 ORTHO05D008116 3.3e-25 121.3 325 41.5
arahy.Tifrunner.gnm1.ann1.97ANKK Arachis hypogaea HOM05D006503 ORTHO05D008116 4.3e-25 120.9 323 36.2
arahy.Tifrunner.gnm1.ann1.ER6M1I Arachis hypogaea HOM05D006503 ORTHO05D008116 4.3e-25 120.9 323 35.0
arahy.Tifrunner.gnm1.ann1.YC2S1L Arachis hypogaea HOM05D006503 ORTHO05D008116 4.3e-25 120.9 323 35.0
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 7.3e-25 120.2 307 35.5
AL2G40180 Arabidopsis lyrata HOM05D006503 ORTHO05D008116 2.8e-24 118.2 733 55.4
arahy.Tifrunner.gnm1.ann1.RL700P Arachis hypogaea HOM05D006503 ORTHO05D008116 2.8e-24 118.2 307 38.1
Eucgr.A02340 Eucalyptus grandis HOM05D006503 ORTHO05D008116 2.8e-24 118.2 109 45.9
THA.LOC104808133 Tarenaya hassleriana HOM05D006503 ORTHO05D008116 2.8e-24 118.2 123 48.8
Cpa.g.sc32.63 Carica papaya HOM05D006503 ORTHO05D008116 4.7e-24 117.5 123 47.2
Solyc02g083780.3 Solanum lycopersicum HOM05D002880 ORTHO05D008116 6.2e-24 117.1 125 45.6
Ca_06133_v3 Cicer arietinum L. HOM05D006503 ORTHO05D008116 8.1e-24 116.7 239 45.6
Lalb_Chr13g0292411 Lupinus albus HOM05D006503 ORTHO05D008116 1.8e-23 115.5 238 40.8
Medtr5g039700 Medicago truncatula HOM05D006503 ORTHO05D008116 1.8e-23 115.5 316 36.7
SGA_v2.0_scaffold10G05267 Striga asiatica HOM05D006503 ORTHO05D008116 1.8e-23 115.5 241 49.8
CDE05G1884 Ceratophyllum demersum HOM05D006503 ORTHO05D008116 2.3e-23 115.2 245 30.6
Medtr5g018230 Medicago truncatula HOM05D006503 ORTHO05D008116 2.3e-23 115.2 320 36.2
BcaB05g25205 Brassica carinata HOM05D006503 ORTHO05D008116 3.1e-23 114.8 312 36.2
Sp5g34600 Schrenkiella parvula HOM05D006503 ORTHO05D008116 4.0e-23 114.4 310 35.8
arahy.Tifrunner.gnm1.ann1.KC4DMY Arachis hypogaea HOM05D006503 ORTHO05D008116 5.2e-23 114.0 307 36.5
C02p36700 Brassica napus HOM05D006503 ORTHO05D008116 5.2e-23 114.0 129 45.0
ATR0561G112 Amborella trichopoda HOM05D006503 ORTHO05D008116 6.8e-23 113.6 320 53.1
Aqoxy2G03029 Aquilegia oxysepala HOM05D006503 ORTHO05D008116 6.8e-23 113.6 321 41.4
A02p22890 Brassica napus HOM05D006503 ORTHO05D008116 6.8e-23 113.6 129 45.0
BraA02t07289Z Brassica rapa HOM05D006503 ORTHO05D008116 6.8e-23 113.6 129 45.0
Thhalv10018150m.g Eutrema salsugineum HOM05D006503 ORTHO05D008116 6.8e-23 113.6 296 37.2
SalBow6G4098 Salvia bowleyana HOM05D006503 ORTHO05D008116 1.5e-22 112.5 134 41.8
BcaC03g15903 Brassica carinata HOM05D006503 ORTHO05D008116 2.0e-22 112.1 129 44.2
BolC2t09665H Brassica oleracea HOM05D006503 ORTHO05D008116 2.0e-22 112.1 129 44.2
CsaV3_6G013320 Cucumis sativus L. HOM05D006503 ORTHO05D008116 2.6e-22 111.7 128 41.4
ClCG02G018860 Citrullus lanatus HOM05D006503 ORTHO05D008116 3.4e-22 111.3 313 40.6
Glyma.06G144800 Glycine max HOM05D006503 ORTHO05D008116 3.4e-22 111.3 308 44.8
Hund03989 Selenicereus undatus HOM05D006503 ORTHO05D008116 7.6e-22 110.2 124 41.1
VMungo1127G1467 Vigna mungo HOM05D006503 ORTHO05D008116 7.6e-22 110.2 300 47.3
DCAR_022897 Daucus carota HOM05D006503 ORTHO05D008116 3.7e-21 107.8 129 41.9
VMungo1309G1456 Vigna mungo HOM05D006503 ORTHO05D008116 4.9e-21 107.5 300 39.0
MELO3C019605.2 Cucumis melo HOM05D006503 ORTHO05D008116 6.4e-21 107.1 128 40.6
CARHR036700 Cardamine hirsuta HOM05D006503 ORTHO05D008116 8.3e-21 106.7 115 48.7
Psat5g067680 Pisum sativum HOM05D006503 ORTHO05D008116 4.1e-20 104.4 320 38.1
PGR004G2741 Punica granatum HOM05D006503 ORTHO05D008116 4.6e-19 100.9 124 37.9
TPR.G16108 Trifolium pratense HOM05D006503 ORTHO05D008116 2.3e-18 98.6 232 36.2
arahy.Tifrunner.gnm1.ann1.J10LLE Arachis hypogaea HOM05D006503 ORTHO05D008116 3.3e-17 94.7 306 24.5
QL06p034135 Quercus lobata HOM05D006503 ORTHO05D008116 3.6e-16 91.3 169 62.7
TPR.G29649 Trifolium pratense HOM05D006503 ORTHO05D008116 2.4e-15 88.6 263 41.8
Zm00001eb221750 Zea mays HOM05D006503 ORTHO05D008116 2.4e-15 88.6 150 34.7
Os09g0110200 Oryza sativa ssp. japonica HOM05D006503 ORTHO05D008116 5.2e-15 87.4 149 35.6
HPP92_001414 Vanilla planifolia HOM05D006503 ORTHO05D008116 8.9e-15 86.7 159 33.3
HPP92_001421 Vanilla planifolia HOM05D006503 ORTHO05D008116 8.9e-15 86.7 159 33.3
arahy.Tifrunner.gnm1.ann1.1KXV0X Arachis hypogaea HOM05D006503 ORTHO05D008116 7.6e-14 83.6 241 31.1
Glyma.04G221000 Glycine max HOM05D006503 ORTHO05D008116 8.4e-13 80.1 75 50.7
Medtr8g463610 Medicago truncatula HOM05D006503 ORTHO05D008116 7.1e-12 77.0 212 37.3
Phvul.009G141200 Phaseolus vulgaris HOM05D006503 ORTHO05D008116 4.6e-11 74.3 103 36.9
SEGI_01901 Sequoiadendron giganteum HOM05D006503 ORTHO05D008116 3.0e-10 71.6 122 34.4
TPR.G11576 Trifolium pratense HOM05D006503 ORTHO05D008116 1.1e-09 69.7 63 47.6
ATR0177G061 Amborella trichopoda HOM05D006503 ORTHO05D008116 3.3e-09 68.2 63 54.0
HanXRQChr06g0185091 Helianthus annuus HOM05D000424 ORTHO05D000355 1.3e-08 66.2 105 29.5
MSTRG.24505 Avicennia marina HOM05D006400 ORTHO05D008039 4.8e-08 64.3 110 30.9
arahy.Tifrunner.gnm1.ann1.6F2C80 Arachis hypogaea HOM05D006503 ORTHO05D008116 2.4e-07 62.0 114 31.6
Lj4C17T15 Lonicera japonica HOM05D000424 ORTHO05D000355 2.4e-07 62.0 124 28.2
Sc26g0004470 Simmondsia chinensis HOM05D000424 ORTHO05D000355 2.4e-07 62.0 118 31.4
CDE11G1123 Ceratophyllum demersum HOM05D000073 ORTHO05D000033 4.0e-07 61.2 97 35.1
SEGI_12141 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 4.0e-07 61.2 103 26.2
Lsat_1_v5_gn_2_6800 Lactuca sativa HOM05D000424 ORTHO05D000355 5.3e-07 60.8 69 36.2
Sabra05G0189600 Salix brachista HOM05D000424 ORTHO05D000355 9.0e-07 60.1 69 36.2
CiPaw.07G037000 Carya illinoinensis HOM05D000424 ORTHO05D000355 1.2e-06 59.7 99 33.3
Cc09_g06050 Coffea canephora HOM05D000424 ORTHO05D000355 1.2e-06 59.7 76 34.2
Nitab4.5_0003030g0120 Nicotiana tabacum HOM05D000424 ORTHO05D000355 1.5e-06 59.3 116 28.4
Solyc04g081950.4 Solanum lycopersicum HOM05D000424 ORTHO05D000355 1.5e-06 59.3 109 27.5
Sopen04g035590 Solanum pennellii HOM05D000424 ORTHO05D000355 1.5e-06 59.3 109 27.5
CAN.G311.72 Capsicum annuum HOM05D000424 ORTHO05D000355 2.0e-06 58.9 69 34.8
Potri.002G176100 Populus trichocarpa HOM05D000424 ORTHO05D000355 2.0e-06 58.9 96 29.2
PGSC0003DMG400009885 Solanum tuberosum HOM05D000424 ORTHO05D000355 2.0e-06 58.9 109 27.5
Aqoxy7G02204 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 2.6e-06 58.5 102 30.4
arahy.Tifrunner.gnm1.ann1.C3XHUQ Arachis hypogaea HOM05D006503 ORTHO05D008116 2.6e-06 58.5 72 37.5
Aqoxy6G01988 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 3.4e-06 58.2 69 31.9
Manes.04G002700 Manihot esculenta HOM05D000424 ORTHO05D000355 3.4e-06 58.2 106 30.2
SEGI_17014 Sequoiadendron giganteum HOM05D005770 ORTHO05D006702 3.4e-06 58.2 109 28.4
SEGI_37272 Sequoiadendron giganteum HOM05D005770 ORTHO05D006702 3.4e-06 58.2 109 28.4
SGA_v2.0_scaffold54G19637 Striga asiatica HOM05D006400 ORTHO05D008039 3.4e-06 58.2 102 26.5
Manes.05G142800 Manihot esculenta HOM05D000424 ORTHO05D000355 4.4e-06 57.8 69 31.9
TWI12G1155 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 4.4e-06 57.8 76 34.2
Manes.12G118100 Manihot esculenta HOM05D000424 ORTHO05D000355 5.8e-06 57.4 97 32.0
Potri.005G245400 Populus trichocarpa HOM05D000424 ORTHO05D000355 5.8e-06 57.4 69 34.8
Nn1g08093 Nelumbo nucifera HOM05D007661 ORTHO05D009671 7.6e-06 57.0 101 28.7
PSO017G1759 Papaver somniferum HOM05D007661 ORTHO05D009671 7.6e-06 57.0 101 27.7
PSO063G2745 Papaver somniferum HOM05D007661 ORTHO05D009671 9.9e-06 56.6 101 27.7


User provided reference genes

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