Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g073950 Amaranthus hybridus HOM05D002318 ORTHO05D008744 4.0e-204 714.5 360 100.0
EL10As3g23350 Beta vulgaris HOM05D002318 ORTHO05D008744 1.5e-150 536.6 369 75.3
AUR62043182 Chenopodium quinoa HOM05D002318 ORTHO05D008744 5.7e-150 534.6 360 76.4
Hund05860 Selenicereus undatus HOM05D002318 ORTHO05D008744 1.5e-139 500.0 358 73.2
AUR62038089 Chenopodium quinoa HOM05D002318 ORTHO05D008744 1.6e-136 490.0 360 71.9
Sc11g0002270 Simmondsia chinensis HOM05D002318 ORTHO05D008744 1.1e-134 483.8 360 68.9
TAR622G0636 Trochodendron aralioides HOM05D002318 ORTHO05D004713 7.2e-121 438.0 358 64.0
QL03p070830 Quercus lobata HOM05D002318 ORTHO05D008744 2.0e-118 429.9 357 63.9
Haze_11934 Corylus avellana HOM05D002318 ORTHO05D008744 9.8e-118 427.6 356 62.9
Cfa008908 Carpinus fangiana HOM05D002318 ORTHO05D008744 4.9e-117 425.2 356 62.4
Potri.010G161600 Populus trichocarpa HOM05D002318 ORTHO05D008744 1.1e-116 424.1 335 64.5
TWI75G0802 Tripterygium wilfordii HOM05D002318 ORTHO05D008744 1.1e-116 424.1 360 60.3
GSVIVG01012177001 Vitis vinifera HOM05D002318 ORTHO05D008744 5.4e-116 421.8 358 62.0
Atru.chr11.1690 Acer truncatum HOM05D002318 ORTHO05D008744 5.9e-115 418.3 358 61.2
Aqoxy3G03551 Aquilegia oxysepala HOM05D002318 ORTHO05D008744 1.7e-114 416.8 363 61.7
CiPaw.05G128000 Carya illinoinensis HOM05D002318 ORTHO05D008744 1.7e-114 416.8 357 62.2
Thecc.02G336500 Theobroma cacao HOM05D002318 ORTHO05D008744 2.3e-114 416.4 357 60.5
COL.COLO4_27936 Corchorus olitorius HOM05D002318 ORTHO05D008744 1.1e-113 414.1 358 59.8
Phvul.002G069400 Phaseolus vulgaris HOM05D002318 ORTHO05D008744 5.5e-113 411.8 357 59.1
Sabra10G0122900 Salix brachista HOM05D002318 ORTHO05D008744 9.5e-113 411.0 362 61.0
Lsat_1_v5_gn_8_48101 Lactuca sativa HOM05D002318 ORTHO05D004713 4.7e-112 408.7 355 60.3
Lj2g0021077 Lotus japonicus HOM05D002318 ORTHO05D008744 1.0e-111 407.5 357 58.5
VMungo1215G2584 Vigna mungo HOM05D002318 ORTHO05D008744 2.3e-111 406.4 329 62.3
RcHm_v2.0_Chr4g0438871 Rosa chinensis HOM05D002318 ORTHO05D008744 6.8e-111 404.8 358 60.6
Lalb_Chr17g0340981 Lupinus albus HOM05D002318 ORTHO05D008744 8.9e-111 404.4 329 62.0
Duzib268G0798 Durio zibethinus HOM05D002318 ORTHO05D008744 1.5e-110 403.7 352 59.4
MELO3C011434.2 Cucumis melo HOM05D002318 ORTHO05D008744 7.5e-110 401.4 359 57.9
MD16G1064900 Malus domestica HOM05D002318 ORTHO05D008744 9.8e-110 401.0 338 61.8
Gorai.013G091200 Gossypium raimondii HOM05D002318 ORTHO05D008744 2.2e-109 399.8 357 58.5
PGR119G0925 Punica granatum HOM05D002318 ORTHO05D008744 2.2e-109 399.8 363 59.2
THA.LOC104805183 Tarenaya hassleriana HOM05D002318 ORTHO05D008744 2.2e-109 399.8 355 60.3
Ciclev10032054m.g Citrus clementina HOM05D002318 ORTHO05D008744 2.9e-109 399.4 358 59.5
CsaV3_6G032440 Cucumis sativus L. HOM05D002318 ORTHO05D008744 6.3e-109 398.3 356 57.9
FAN22G0051 Fragaria x ananassa HOM05D002318 ORTHO05D008744 1.4e-108 397.1 357 59.4
Cc11_g12380 Coffea canephora HOM05D002318 ORTHO05D008744 2.4e-108 396.4 358 58.9
Glyma.02G113500 Glycine max HOM05D002318 ORTHO05D008744 4.1e-108 395.6 357 59.4
Psat2g128360 Pisum sativum HOM05D002318 ORTHO05D008744 4.1e-108 395.6 354 58.2
HanXRQChr12g0362851 Helianthus annuus HOM05D002318 ORTHO05D008744 5.4e-108 395.2 364 59.6
FAN07G2980 Fragaria x ananassa HOM05D002318 ORTHO05D004713 7.0e-108 394.8 357 59.1
arahy.Tifrunner.gnm1.ann1.T5ZGHX Arachis hypogaea HOM05D002318 ORTHO05D008744 2.7e-107 392.9 352 59.9
Gohir.A13G079900 Gossypium hirsutum HOM05D002318 ORTHO05D008744 2.7e-107 392.9 353 58.1
arahy.Tifrunner.gnm1.ann1.T0481B Arachis hypogaea HOM05D002318 ORTHO05D008744 5.9e-107 391.7 356 59.0
Oeu021096.1 Olea europaea HOM05D002318 ORTHO05D008744 1.0e-106 391.0 336 60.4
FAN17G2010 Fragaria x ananassa HOM05D002318 ORTHO05D008744 1.3e-106 390.6 368 57.9
PGSC0003DMG401028329 Solanum tuberosum HOM05D002318 ORTHO05D008744 2.3e-106 389.8 361 58.2
PGSC0003DMG402022110 Solanum tuberosum HOM05D002318 ORTHO05D008744 2.3e-106 389.8 361 58.2
CANSAT54G0184 Cannabis sativa HOM05D002318 ORTHO05D008744 2.9e-106 389.4 292 66.1
Migut.L01223 Erythranthe guttata HOM05D002318 ORTHO05D008744 5.0e-106 388.7 363 56.7
Ca_04907_v3 Cicer arietinum L. HOM05D002318 ORTHO05D008744 6.6e-106 388.3 354 57.1
Nitab4.5_0000334g0260 Nicotiana tabacum HOM05D002318 ORTHO05D008744 6.6e-106 388.3 361 59.0
TPR.G22412 Trifolium pratense HOM05D002318 ORTHO05D008744 8.6e-106 387.9 359 56.8
vmacro01330 Vaccinium macrocarpon HOM05D002318 ORTHO05D008744 1.1e-105 387.5 360 58.6
MBI16_g06774_MAGBIO Magnolia biondii HOM05D002318 ORTHO05D008744 1.9e-105 386.7 359 59.3
CAN.G1340.13 Capsicum annuum HOM05D002318 ORTHO05D008744 4.3e-105 385.6 361 57.6
Peaxi162Scf00314g00023 Petunia axillaris HOM05D002318 ORTHO05D008744 5.6e-105 385.2 346 59.5
Eucgr.G02464 Eucalyptus grandis HOM05D002318 ORTHO05D008744 7.3e-105 384.8 363 55.9
Actinidia19922 Actinidia chinensis HOM05D002318 ORTHO05D008744 9.5e-105 384.4 357 57.7
Sopen05g007450 Solanum pennellii HOM05D002318 ORTHO05D008744 1.2e-104 384.0 361 57.1
Cpa.g.sc1.87 Carica papaya HOM05D002318 ORTHO05D008744 6.1e-104 381.7 354 58.8
ClCG08G010240 Citrullus lanatus HOM05D002318 ORTHO05D008744 2.3e-103 379.8 397 52.4
Sp2g14310 Schrenkiella parvula HOM05D002318 ORTHO05D008744 2.3e-103 379.8 354 59.9
FAN12G0082 Fragaria x ananassa HOM05D002318 ORTHO05D008744 3.1e-103 379.4 357 57.7
Solyc05g012620.4 Solanum lycopersicum HOM05D002318 ORTHO05D008744 5.2e-103 378.6 306 63.4
Thhalv10004578m.g Eutrema salsugineum HOM05D002318 ORTHO05D008744 1.2e-102 377.5 360 60.0
AL5G13100 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 4.4e-102 375.6 300 64.0
AL5G13140 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 4.4e-102 375.6 300 64.0
Carub.0005s0236 Capsella rubella HOM05D002318 ORTHO05D008744 2.2e-101 373.2 360 57.8
BcaC06g31184 Brassica carinata HOM05D002318 ORTHO05D008744 6.4e-101 371.7 300 65.3
BcaC06g34000 Brassica carinata HOM05D002318 ORTHO05D008744 6.4e-101 371.7 353 58.9
AT2G03390 Arabidopsis thaliana HOM05D002318 ORTHO05D008744 2.4e-100 369.8 300 64.7
CARHR145730 Cardamine hirsuta HOM05D002318 ORTHO05D008744 3.2e-100 369.4 355 57.7
CSS0013540 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 4.1e-100 369.0 355 57.7
Aa31LG2G7170 Aethionema arabicum HOM05D002318 ORTHO05D008744 5.4e-100 368.6 364 57.1
ECA233G4874 Erigeron canadensis HOM05D002318 ORTHO05D008744 1.2e-99 367.5 335 58.5
BraA06t27203Z Brassica rapa HOM05D002318 ORTHO05D008744 6.0e-99 365.2 356 59.3
C07p33850 Brassica napus HOM05D002318 ORTHO05D008744 1.3e-98 364.0 355 58.9
Gohir.D13G079700 Gossypium hirsutum HOM05D002318 ORTHO05D008744 1.3e-98 364.0 357 55.2
ATR0111G011 Amborella trichopoda HOM05D002318 ORTHO05D008744 1.7e-98 363.6 323 61.6
BolC7t43899H Brassica oleracea HOM05D002318 ORTHO05D008744 3.9e-98 362.5 355 58.6
DCAR_027449 Daucus carota HOM05D002318 ORTHO05D008744 1.1e-97 360.9 319 59.9
Rhsim12G0076700 Rhododendron simsii HOM05D002318 ORTHO05D008744 3.3e-97 359.4 362 54.4
Os08g0172200 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 4.0e-95 352.4 294 62.2
SalBow2G2755 Salvia bowleyana HOM05D002318 ORTHO05D008744 4.0e-95 352.4 362 52.2
Medtr5g043480 Medicago truncatula HOM05D002318 ORTHO05D008744 2.6e-94 349.7 356 53.1
CDE04G0061 Ceratophyllum demersum HOM05D002318 ORTHO05D008744 1.9e-92 343.6 300 60.0
unitig_22.g6902 Utricularia gibba HOM05D002318 ORTHO05D008744 1.9e-92 343.6 308 59.7
Nn3g17371 Nelumbo nucifera HOM05D002318 ORTHO05D008744 2.7e-91 339.7 306 60.1
Hma1.2p1_0354F.1_g133650 Hydrangea macrophylla HOM05D002318 ORTHO05D008744 1.7e-90 337.0 310 57.1
Prupe.1G282000 Prunus persica HOM05D002318 ORTHO05D008744 8.6e-90 334.7 351 54.4
Manes.01G030400 Manihot esculenta HOM05D002318 ORTHO05D008744 2.6e-86 323.2 310 57.4
Sed0004708 Sechium edule HOM05D002318 ORTHO05D008744 1.4e-84 317.4 294 57.1
Dinv34114 Davidia involucrata HOM05D002318 ORTHO05D008744 4.1e-84 315.8 297 59.9
SEGI_16280 Sequoiadendron giganteum HOM05D002318 ORTHO05D008744 4.1e-84 315.8 307 55.4
FvH4_4g30500 Fragaria vesca HOM05D002318 ORTHO05D008744 1.9e-81 307.0 296 57.4
Lj6C782T15 Lonicera japonica HOM05D002318 ORTHO05D008744 2.8e-80 303.1 368 47.0
Mapoly0001s0530 Marchantia polymorpha HOM05D002318 ORTHO05D008744 1.8e-79 300.4 287 55.1
SGA_v2.0_scaffold16G07752 Striga asiatica HOM05D002318 ORTHO05D008744 1.5e-78 297.4 328 49.7
A06p43150 Brassica napus HOM05D002318 ORTHO05D008744 1.2e-75 287.7 309 56.6
Pp3c7_3960 Physcomitrium patens HOM05D002318 ORTHO05D008744 3.5e-75 286.2 334 47.6
PSO591G0040 Papaver somniferum HOM05D002318 ORTHO05D008744 1.7e-74 283.9 284 54.2
AagrBONN_evm.TU.Sc2ySwM_117.1985 Anthoceros agrestis HOM05D002318 ORTHO05D008744 3.1e-71 273.1 284 51.8
Dinv16705 Davidia involucrata HOM05D002318 ORTHO05D004713 2.7e-67 260.0 245 60.4
Actinidia31948 Actinidia chinensis HOM05D002318 ORTHO05D008744 2.1e-64 250.4 307 46.6
CBR_g27967 Chara braunii HOM05D002318 ORTHO05D008744 4.2e-60 236.1 286 46.5
arahy.Tifrunner.gnm1.ann1.1U2S5X Arachis hypogaea HOM05D002318 ORTHO05D008744 5.5e-60 235.7 220 59.1
arahy.Tifrunner.gnm1.ann1.TF58FW Arachis hypogaea HOM05D002318 ORTHO05D008744 9.3e-60 235.0 220 59.1
CSS0007300 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 1.6e-59 234.2 216 62.0
SMO115G0105 Selaginella moellendorffii HOM05D002318 ORTHO05D008744 4.3e-57 226.1 242 50.4
Glyma.01G055000 Glycine max HOM05D002318 ORTHO05D008744 5.6e-57 225.7 191 63.9
FAN16G1553 Fragaria x ananassa HOM05D002318 ORTHO05D008744 6.5e-53 212.2 184 59.8
CSS0032009 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 1.7e-45 187.6 112 73.2
Zm00001eb370310 Zea mays HOM05D002318 ORTHO05D008744 1.7e-45 187.6 156 61.5
Aa31sc734G30 Aethionema arabicum HOM05D002318 ORTHO05D008744 2.2e-37 160.6 150 61.3
PRCOL_00000845 Prasinoderma coloniale HOM05D002318 ORTHO05D008744 1.4e-36 157.9 288 34.4
Cre02.g113700 Chlamydomonas reinhardtii HOM05D002318 ORTHO05D008744 7.2e-36 155.6 292 35.3
Glyma.01G054950 Glycine max HOM05D002318 ORTHO05D008744 1.0e-18 98.6 89 58.4
Os01g0764500 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 7.0e-15 85.9 63 61.9
CBR_g50304 Chara braunii HOM05D020303 ORTHO05D021299 4.2e-12 76.6 183 29.5
arahy.Tifrunner.gnm1.ann1.QV9UMR Arachis hypogaea HOM05D000001 ORTHO05D000003 4.8e-08 63.2 37 73.0
Lsat_1_v5_gn_5_151580 Lactuca sativa HOM05D002318 ORTHO05D008744 4.1e-07 60.1 56 55.4


User provided reference genes

Program Settings