Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g073670 Amaranthus hybridus HOM05D001733 ORTHO05D001882 1.9e-147 525.8 262 100.0
AUR62020701 Chenopodium quinoa HOM05D001733 ORTHO05D001882 2.0e-80 303.1 166 86.1
AUR62028023 Chenopodium quinoa HOM05D001733 ORTHO05D001882 3.8e-79 298.9 166 84.9
EL10Ac2g03646 Beta vulgaris HOM05D001733 ORTHO05D001882 1.4e-78 297.0 247 63.6
Hund19368 Selenicereus undatus HOM05D001733 ORTHO05D001882 1.7e-71 273.5 166 76.5
Sc06g0001410 Simmondsia chinensis HOM05D001733 ORTHO05D001882 1.1e-57 227.6 169 68.0
CiPaw.02G047900 Carya illinoinensis HOM05D001733 ORTHO05D001882 5.9e-56 221.9 162 68.5
Eucgr.D01117 Eucalyptus grandis HOM05D001733 ORTHO05D001882 1.0e-55 221.1 167 64.7
TWI73G0070 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 2.3e-55 219.9 165 67.3
Lalb_Chr23g0264941 Lupinus albus HOM05D001733 ORTHO05D001882 2.9e-55 219.5 163 63.8
Manes.08G156000 Manihot esculenta HOM05D001733 ORTHO05D001882 1.5e-54 217.2 168 66.1
QL08p048200 Quercus lobata HOM05D001733 ORTHO05D001882 2.5e-54 216.5 163 65.0
Sabra13G0060700 Salix brachista HOM05D001733 ORTHO05D001882 2.5e-54 216.5 168 64.3
Cfa003706 Carpinus fangiana HOM05D001733 ORTHO05D001882 3.3e-54 216.1 166 63.3
Haze_15782 Corylus avellana HOM05D001733 ORTHO05D001882 4.2e-54 215.7 163 64.4
Potri.013G070001 Populus trichocarpa HOM05D001733 ORTHO05D001882 5.5e-54 215.3 168 64.9
Phvul.009G117800 Phaseolus vulgaris HOM05D001733 ORTHO05D001882 7.2e-54 214.9 161 64.0
CSS0001376 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 9.5e-54 214.5 163 66.9
CSS0011354 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 9.5e-54 214.5 163 66.9
Cpa.g.sc73.32 Carica papaya HOM05D001733 ORTHO05D001882 9.5e-54 214.5 166 64.5
Glyma.06G001900 Glycine max HOM05D001733 ORTHO05D001882 9.5e-54 214.5 161 64.6
VMungo1309G3105 Vigna mungo HOM05D001733 ORTHO05D001882 1.2e-53 214.2 161 64.0
TWI39G0742 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 1.6e-53 213.8 162 66.0
PGR044G0034 Punica granatum HOM05D001733 ORTHO05D001882 2.8e-53 213.0 161 65.8
Sed0021856 Sechium edule HOM05D001733 ORTHO05D001882 3.6e-53 212.6 166 62.0
Medtr3g118200 Medicago truncatula HOM05D001733 ORTHO05D001882 4.7e-53 212.2 161 62.1
Prupe.2G107500 Prunus persica HOM05D001733 ORTHO05D001882 4.7e-53 212.2 166 62.0
MD02G1230600 Malus domestica HOM05D001733 ORTHO05D001882 6.1e-53 211.8 166 61.4
Ca_15286_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 8.0e-53 211.5 162 63.0
Ca_15422_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 8.0e-53 211.5 162 63.0
Psat5g001280 Pisum sativum HOM05D001733 ORTHO05D001882 8.0e-53 211.5 162 63.6
Actinidia26430 Actinidia chinensis HOM05D001733 ORTHO05D001882 1.0e-52 211.1 163 65.6
ClCG08G014080 Citrullus lanatus HOM05D001733 ORTHO05D001882 1.8e-52 210.3 166 60.8
Lj1g0025923 Lotus japonicus HOM05D001733 ORTHO05D001882 2.3e-52 209.9 166 60.2
Nitab4.5_0000792g0200 Nicotiana tabacum HOM05D001733 ORTHO05D001882 3.0e-52 209.5 163 64.4
Dinv43956 Davidia involucrata HOM05D001733 ORTHO05D001882 6.8e-52 208.4 166 63.9
Oeu060721.2 Olea europaea HOM05D001733 ORTHO05D001882 6.8e-52 208.4 163 64.4
RcHm_v2.0_Chr1g0341081 Rosa chinensis HOM05D001733 ORTHO05D001882 6.8e-52 208.4 166 61.4
Nitab4.5_0007787g0030 Nicotiana tabacum HOM05D001733 ORTHO05D001882 8.9e-52 208.0 163 64.4
PGSC0003DMG401031123 Solanum tuberosum HOM05D001733 ORTHO05D001882 8.9e-52 208.0 163 63.2
Ciclev10023278m.g Citrus clementina HOM05D001733 ORTHO05D001882 1.2e-51 207.6 163 63.2
CsaV3_2G024360 Cucumis sativus L. HOM05D001733 ORTHO05D001882 1.2e-51 207.6 166 61.4
MELO3C011346.2 Cucumis melo HOM05D001733 ORTHO05D001882 2.0e-51 206.8 166 59.6
FAN03G0842 Fragaria x ananassa HOM05D001733 ORTHO05D001882 7.5e-51 204.9 166 60.8
Solyc01g081520.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 7.5e-51 204.9 163 62.6
Sopen01g033080 Solanum pennellii HOM05D001733 ORTHO05D001882 7.5e-51 204.9 163 62.6
Lj7P561T30 Lonicera japonica HOM05D001733 ORTHO05D001882 9.8e-51 204.5 160 63.8
FAN10G0402 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.3e-50 204.1 166 60.2
FvH4_7g08140 Fragaria vesca HOM05D001733 ORTHO05D001882 1.7e-50 203.8 166 60.2
FAN06G0601 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.7e-50 203.8 166 60.2
Atru.chr9.238 Acer truncatum HOM05D001733 ORTHO05D001882 2.2e-50 203.4 166 59.6
DCAR_029572 Daucus carota HOM05D001733 ORTHO05D001882 2.2e-50 203.4 166 62.0
FAN01G0027 Fragaria x ananassa HOM05D001733 ORTHO05D001882 2.8e-50 203.0 166 60.2
Gohir.D11G237300 Gossypium hirsutum HOM05D001733 ORTHO05D001882 4.9e-50 202.2 169 63.3
arahy.Tifrunner.gnm1.ann1.A8CT9J Arachis hypogaea HOM05D001733 ORTHO05D001882 6.3e-50 201.8 163 58.9
TAR362G0336 Trochodendron aralioides HOM05D001733 ORTHO05D001882 6.3e-50 201.8 163 60.7
Gorai.007G250600 Gossypium raimondii HOM05D001733 ORTHO05D001882 1.1e-49 201.1 169 62.7
Migut.B01416 Erythranthe guttata HOM05D001733 ORTHO05D001882 1.4e-49 200.7 163 60.1
CANSAT78G1742 Cannabis sativa HOM05D001733 ORTHO05D001882 4.1e-49 199.1 159 60.4
Cc02_g26570 Coffea canephora HOM05D001733 ORTHO05D001882 4.1e-49 199.1 166 60.2
MSTRG.20625 Avicennia marina HOM05D001733 ORTHO05D001882 5.4e-49 198.7 163 60.7
vmacro15942 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 7.0e-49 198.4 178 58.4
Gohir.A11G224218 Gossypium hirsutum HOM05D001733 ORTHO05D001882 1.2e-48 197.6 169 62.1
Lsat_1_v5_gn_7_34060 Lactuca sativa HOM05D001733 ORTHO05D001882 1.2e-48 197.6 166 59.6
Aa31LG5G14110 Aethionema arabicum HOM05D001733 ORTHO05D001882 2.0e-48 196.8 167 58.1
SalBow5G0061 Salvia bowleyana HOM05D001733 ORTHO05D001882 4.5e-48 195.7 166 57.8
SGA_v2.0_scaffold98G29368 Striga asiatica HOM05D001733 ORTHO05D001882 5.9e-48 195.3 166 57.8
Sp3g02590 Schrenkiella parvula HOM05D001733 ORTHO05D001882 1.3e-47 194.1 167 58.1
unitig_0.g1363 Utricularia gibba HOM05D001733 ORTHO05D001882 1.3e-47 194.1 163 57.7
A05p43710 Brassica napus HOM05D001733 ORTHO05D001882 1.7e-47 193.7 167 56.9
Thecc.05G236000 Theobroma cacao HOM05D001733 ORTHO05D001882 1.7e-47 193.7 234 49.6
BcaC05g30264 Brassica carinata HOM05D001733 ORTHO05D001882 2.3e-47 193.4 167 57.5
THA.LOC104820811 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 2.3e-47 193.4 167 58.1
AL3G13370 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 2.9e-47 193.0 167 57.5
AT3G03600 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 2.9e-47 193.0 167 57.5
Thhalv10021487m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 3.9e-47 192.6 167 57.5
BcaB04g19363 Brassica carinata HOM05D001733 ORTHO05D001882 5.0e-47 192.2 178 55.6
Duzib106G0611 Durio zibethinus HOM05D001733 ORTHO05D001882 5.0e-47 192.2 169 61.5
C05p63290 Brassica napus HOM05D001733 ORTHO05D001882 6.6e-47 191.8 167 56.3
Carub.0003s0276 Capsella rubella HOM05D001733 ORTHO05D001882 6.6e-47 191.8 167 56.9
BolC5t34992H Brassica oleracea HOM05D001733 ORTHO05D001882 8.6e-47 191.4 167 56.3
BcaC05g29865 Brassica carinata HOM05D001733 ORTHO05D001882 1.1e-46 191.0 167 55.7
Rhsim07G0048200 Rhododendron simsii HOM05D001733 ORTHO05D001882 1.1e-46 191.0 163 60.7
CARHR077640 Cardamine hirsuta HOM05D001733 ORTHO05D001882 1.5e-46 190.7 167 56.3
BcaC01g04396 Brassica carinata HOM05D001733 ORTHO05D001882 1.9e-46 190.3 167 56.3
A03p33340 Brassica napus HOM05D001733 ORTHO05D001882 1.9e-46 190.3 167 56.3
BolC3t16323H Brassica oleracea HOM05D001733 ORTHO05D001882 1.9e-46 190.3 167 56.3
BraA03t12505Z Brassica rapa HOM05D001733 ORTHO05D001882 1.9e-46 190.3 167 56.3
COL.COLO4_21825 Corchorus olitorius HOM05D001733 ORTHO05D001882 1.9e-46 190.3 169 60.4
BraA05t23110Z Brassica rapa HOM05D001733 ORTHO05D001882 2.5e-46 189.9 167 56.3
C03p40580 Brassica napus HOM05D001733 ORTHO05D001882 3.3e-46 189.5 167 56.3
HanXRQChr04g0117601 Helianthus annuus HOM05D001733 ORTHO05D001882 5.6e-46 188.7 166 58.4
Aqoxy7G03741 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 8.0e-45 184.9 164 58.5
Nn044s41810 Nelumbo nucifera HOM05D001733 ORTHO05D001882 5.4e-41 172.2 144 60.4
Nn1g10086 Nelumbo nucifera HOM05D001733 ORTHO05D001882 5.4e-41 172.2 144 60.4
ECA236G4258 Erigeron canadensis HOM05D000200 ORTHO05D000262 2.3e-39 166.8 237 43.0
vmacro13603 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 5.4e-33 145.6 159 50.9
Cc08_g05780 Coffea canephora HOM05D001733 ORTHO05D001882 1.3e-31 141.0 128 57.0
Cc05_g05120 Coffea canephora HOM05D001733 ORTHO05D001882 1.7e-31 140.6 128 57.0
SEGI_38852 Sequoiadendron giganteum HOM05D001733 ORTHO05D001882 1.6e-29 134.0 171 42.7
TPR.G38482 Trifolium pratense HOM05D001733 ORTHO05D001882 3.1e-28 129.8 161 47.2
RcHm_v2.0_Chr1g0383121 Rosa chinensis HOM05D001733 ORTHO05D001882 9.9e-27 124.8 117 56.4
RcHm_v2.0_Chr2g0085551 Rosa chinensis HOM05D001733 ORTHO05D001882 2.4e-25 120.2 99 61.6
RcHm_v2.0_Chr3g0481141 Rosa chinensis HOM05D001733 ORTHO05D001882 5.4e-25 119.0 103 59.2
RcHm_v2.0_Chr1g0363821 Rosa chinensis HOM05D001733 ORTHO05D001882 3.5e-24 116.3 103 59.2
Peaxi162Scf01260g00014 Petunia axillaris HOM05D001733 ORTHO05D001882 1.3e-18 97.8 84 59.5
CAN.G1249.13 Capsicum annuum HOM05D001733 ORTHO05D001882 6.4e-18 95.5 82 59.8
RcHm_v2.0_Chr5g0027611 Rosa chinensis HOM05D001733 ORTHO05D001882 6.4e-18 95.5 67 68.7
RcHm_v2.0_Chr5g0054321 Rosa chinensis HOM05D001733 ORTHO05D001882 8.4e-18 95.1 64 68.8
AagrBONN_evm.TU.Sc2ySwM_228.194 Anthoceros agrestis HOM05D001733 ORTHO05D001882 1.9e-17 94.0 180 33.9
arahy.Tifrunner.gnm1.ann1.VEWU5V Arachis hypogaea HOM05D001733 ORTHO05D001882 1.3e-15 87.8 60 66.7
arahy.Tifrunner.gnm1.ann1.3YR680 Arachis hypogaea HOM05D001733 ORTHO05D001882 8.7e-15 85.1 71 54.9
RcHm_v2.0_Chr6g0246101 Rosa chinensis HOM05D001733 ORTHO05D001882 5.6e-14 82.4 67 62.7
RcHm_v2.0_Chr5g0036111 Rosa chinensis HOM05D001733 ORTHO05D001882 4.4e-11 72.8 129 38.8
Zm00001eb385930 Zea mays HOM05D022646 ORTHO05D001882 7.6e-11 72.0 65 56.9
Zm00001eb436200 Zea mays HOM05D022646 ORTHO05D001882 7.6e-11 72.0 65 56.9
Zm00001eb436250 Zea mays HOM05D022646 ORTHO05D001882 7.6e-11 72.0 65 56.9
Zm00001eb436290 Zea mays HOM05D022646 ORTHO05D001882 7.6e-11 72.0 65 56.9
Zm00001eb436330 Zea mays HOM05D022646 ORTHO05D001882 7.6e-11 72.0 65 56.9
HanXRQChr16g0501591 Helianthus annuus HOM05D001733 ORTHO05D001882 3.0e-07 60.1 47 61.7
HanXRQChr05g0139891 Helianthus annuus HOM05D001733 ORTHO05D001882 6.6e-07 58.9 53 56.6


User provided reference genes

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