Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 2.3e-196 688.7 351 100.0
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 1.8e-153 546.2 349 77.7
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.2e-149 533.5 305 84.3
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 6.1e-149 531.2 397 70.8
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 5.4e-137 491.5 345 73.9
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 3.5e-128 462.2 301 73.1
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 6.0e-128 461.5 312 73.4
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 1.7e-127 459.9 301 73.4
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 9.5e-126 454.1 302 70.5
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 3.6e-125 452.2 346 66.8
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.1e-124 450.7 298 72.5
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 1.1e-124 450.7 301 72.4
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 4.0e-124 448.7 301 70.4
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 5.2e-124 448.4 298 72.1
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 6.8e-124 448.0 303 72.3
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 6.8e-124 448.0 305 68.5
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 1.5e-123 446.8 301 71.1
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 1.5e-123 446.8 311 69.8
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 2.6e-123 446.0 320 66.6
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 3.4e-123 445.7 329 66.3
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 3.4e-123 445.7 329 66.3
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 4.4e-123 445.3 315 68.9
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 9.8e-123 444.1 335 66.0
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 1.7e-122 443.4 334 65.9
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 2.2e-122 443.0 310 68.1
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 2.9e-122 442.6 351 61.8
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 3.7e-122 442.2 295 72.5
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 3.7e-122 442.2 306 68.6
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 3.7e-122 442.2 297 70.7
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 4.9e-122 441.8 295 72.2
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 6.4e-122 441.4 297 70.4
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 8.3e-122 441.0 332 63.9
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 1.4e-121 440.3 295 72.2
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 2.4e-121 439.5 306 68.0
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 3.2e-121 439.1 302 68.2
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 5.4e-121 438.3 297 70.0
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 9.2e-121 437.6 300 70.3
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 9.2e-121 437.6 300 70.3
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 2.1e-120 436.4 302 69.5
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 2.7e-120 436.0 302 68.2
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 3.5e-120 435.6 297 70.0
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 4.6e-120 435.3 303 68.0
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 1.0e-119 434.1 303 68.0
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 1.3e-119 433.7 311 68.5
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 2.3e-119 433.0 295 70.8
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 5.1e-119 431.8 298 69.5
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 1.1e-118 430.6 302 69.5
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.5e-118 430.3 302 67.9
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 1.9e-118 429.9 302 67.2
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 3.3e-118 429.1 301 67.8
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 5.6e-118 428.3 303 65.7
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 9.5e-118 427.6 301 67.4
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 9.5e-118 427.6 316 63.9
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 2.1e-117 426.4 318 66.7
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 6.2e-117 424.9 302 67.9
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 8.1e-117 424.5 301 68.4
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 1.4e-116 423.7 295 70.5
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 3.1e-116 422.5 310 64.5
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 4.0e-116 422.2 313 64.9
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 1.2e-115 420.6 313 65.5
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 4.4e-115 418.7 301 68.8
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 5.8e-115 418.3 301 68.4
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 1.3e-114 417.2 312 65.7
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 8.3e-114 414.5 303 66.7
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.9e-113 413.3 295 69.5
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 2.4e-113 412.9 298 67.1
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 3.2e-113 412.5 297 64.6
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 3.2e-113 412.5 297 64.6
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 5.4e-113 411.8 315 63.8
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 1.6e-112 410.2 299 66.9
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 6.0e-112 408.3 314 63.7
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 6.0e-112 408.3 314 62.4
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 1.0e-111 407.5 314 63.4
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 1.7e-111 406.8 351 59.0
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 6.6e-111 404.8 308 64.0
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 1.5e-110 403.7 310 63.5
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 1.9e-110 403.3 315 63.8
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 3.3e-110 402.5 308 63.6
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 3.3e-110 402.5 292 66.1
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 9.6e-110 401.0 299 64.5
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 9.6e-110 401.0 299 64.5
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 1.6e-109 400.2 299 63.9
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 1.6e-109 400.2 308 62.0
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 2.1e-109 399.8 311 62.4
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 2.8e-109 399.4 298 64.8
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 6.2e-109 398.3 290 66.6
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.1e-108 397.5 290 66.6
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 3.1e-108 396.0 366 57.4
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 6.8e-108 394.8 290 65.5
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 1.5e-107 393.7 315 61.9
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 2.0e-107 393.3 306 62.7
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 4.4e-107 392.1 314 62.1
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 5.8e-107 391.7 344 57.3
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 7.6e-107 391.3 304 62.8
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 9.9e-107 391.0 316 61.1
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 1.3e-106 390.6 264 70.8
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.3e-106 390.6 296 62.5
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.9e-106 389.4 296 62.2
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 2.9e-106 389.4 296 62.2
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 3.8e-106 389.0 309 61.5
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.9e-105 386.7 308 61.0
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 6.0e-104 381.7 338 56.5
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 8.7e-103 377.9 322 58.1
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 3.3e-102 375.9 310 58.1
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 9.6e-102 374.4 307 59.6
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 8.1e-101 371.3 331 61.0
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 5.3e-100 368.6 306 59.8
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 5.3e-100 368.6 304 59.9
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.5e-99 367.1 302 61.3
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.7e-98 363.6 301 58.1
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 3.8e-98 362.5 266 63.2
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 9.6e-94 347.8 299 59.5
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 3.6e-93 345.9 291 57.4
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 3.1e-92 342.8 310 54.5
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 1.2e-91 340.9 296 55.4
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 1.7e-90 337.0 296 58.1
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 3.5e-88 329.3 276 60.1
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 2.1e-85 320.1 308 57.1
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 4.5e-83 312.4 162 92.0
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 3.5e-80 302.8 218 67.9
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.8e-79 300.4 303 48.8
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 8.7e-79 298.1 275 54.2
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 3.7e-77 292.7 315 51.1
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 8.2e-77 291.6 344 43.9
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 7.6e-75 285.0 300 46.7
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 3.3e-70 269.6 293 44.0
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.8e-69 266.5 196 65.8
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 1.3e-66 257.7 267 48.3
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 6.5e-66 255.4 304 44.1
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.7e-64 250.0 198 64.1
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.0e-55 221.5 147 78.2
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 2.8e-53 213.4 230 49.1
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 7.7e-51 205.3 174 55.7
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 1.0e-42 178.3 285 34.4
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 7.5e-38 162.2 84 86.9
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 3.4e-30 136.7 124 48.4
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 1.8e-28 131.0 99 65.7
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 3.1e-28 130.2 114 57.0
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 3.5e-27 126.7 73 78.1
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 8.6e-26 122.1 68 79.4
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 3.6e-24 116.7 74 73.0
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 3.7e-21 106.7 174 38.5
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 6.4e-21 105.9 110 49.1
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 1.1e-20 105.1 111 46.8
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 1.1e-20 105.1 111 46.8
Hund22592 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.1e-20 105.1 99 53.5
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 5.4e-20 102.8 90 52.2
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 3.9e-18 96.7 91 48.4
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.5e-17 94.7 98 46.9
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 3.1e-15 87.0 60 65.0
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 4.0e-15 86.7 58 69.0
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 1.3e-10 71.6 47 68.1
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 1.1e-09 68.6 93 46.2
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.9e-09 67.8 69 47.8
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 2.1e-08 64.3 92 32.6


User provided reference genes

Program Settings