Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 0.0e+00 1201.8 607 100.0
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 1.2e-290 1002.7 611 83.5
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 4.4e-288 994.2 610 83.0
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 4.9e-279 964.1 681 74.3
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 8.6e-276 953.4 629 78.2
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 4.3e-267 924.5 612 77.3
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 5.3e-257 891.0 612 75.3
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 5.6e-243 844.3 587 73.9
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 9.6e-243 843.6 597 72.9
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 6.2e-242 840.9 587 74.3
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 1.4e-241 839.7 587 73.8
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 4.0e-241 838.2 587 73.6
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 7.6e-240 833.9 613 71.5
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 2.9e-239 832.0 587 72.9
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 2.9e-239 832.0 586 73.0
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 3.8e-239 831.6 587 72.6
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 8.4e-239 830.5 609 70.4
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 1.4e-238 829.7 597 71.0
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 2.5e-238 828.9 587 72.1
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 3.2e-238 828.6 587 73.3
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 9.3e-238 827.0 587 72.4
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 3.5e-237 825.1 593 71.5
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.5e-237 825.1 587 71.6
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 4.6e-237 824.7 587 71.6
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 4.6e-237 824.7 613 70.5
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 4.6e-237 824.7 588 71.8
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 6.7e-236 820.8 587 72.1
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 3.3e-235 818.5 587 71.4
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 4.3e-235 818.1 628 69.6
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 5.7e-235 817.8 589 71.8
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 9.7e-235 817.0 587 71.7
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 2.2e-234 815.8 615 69.9
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.7e-234 815.1 587 71.2
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 3.7e-234 815.1 598 72.9
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.1e-233 813.5 590 71.0
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.4e-233 813.1 606 70.0
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 5.3e-233 811.2 586 71.3
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 6.9e-233 810.8 589 71.3
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 9.0e-233 810.4 595 70.6
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 2.6e-232 808.9 589 71.5
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 2.6e-232 808.9 597 70.5
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 5.9e-232 807.7 589 70.6
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 5.9e-232 807.7 617 69.0
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 1.0e-231 807.0 567 72.1
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 1.0e-231 807.0 566 72.6
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 1.0e-231 807.0 589 71.1
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.7e-231 806.2 611 69.7
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.2e-231 805.8 613 69.7
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 5.0e-231 804.7 613 68.8
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 6.5e-231 804.3 615 69.3
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 6.5e-231 804.3 589 71.0
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 8.5e-231 803.9 587 71.4
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 1.1e-230 803.5 580 70.9
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.4e-230 803.1 613 68.8
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 3.2e-230 802.0 598 70.9
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 9.4e-230 800.4 613 68.7
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 2.7e-229 798.9 588 69.9
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 4.6e-229 798.1 586 70.5
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 2.3e-228 795.8 603 68.8
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 2.3e-228 795.8 599 69.3
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 6.7e-228 794.3 615 68.6
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 8.8e-228 793.9 611 68.4
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 1.5e-227 793.1 567 71.6
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 1.9e-227 792.7 610 68.5
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 1.9e-227 792.7 588 70.4
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 3.3e-227 792.0 611 68.2
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.3e-227 792.0 569 73.5
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 2.2e-226 789.3 567 71.1
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 6.3e-226 787.7 603 69.3
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 1.4e-225 786.6 590 70.0
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.8e-225 786.2 602 68.9
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 6.9e-225 784.3 582 69.9
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 6.9e-225 784.3 567 72.8
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 9.1e-225 783.9 608 68.3
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 2.6e-224 782.3 525 75.6
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 5.9e-224 781.2 595 69.6
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 4.2e-222 775.0 609 68.0
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 2.7e-221 772.3 598 66.6
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 4.7e-221 771.5 609 67.7
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 2.2e-218 762.7 571 68.1
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 1.1e-217 760.4 579 68.6
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 1.5e-216 756.5 596 66.6
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 4.5e-216 755.0 593 66.3
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 2.2e-215 752.7 514 73.3
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 3.8e-215 751.9 597 65.3
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.9e-214 749.6 616 64.8
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 5.5e-214 748.0 597 65.8
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.6e-213 746.5 607 65.9
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 2.1e-213 746.1 583 67.4
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 1.8e-212 743.0 582 66.7
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 5.2e-212 741.5 610 64.1
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.1e-211 740.3 572 68.2
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 4.4e-211 738.4 607 64.6
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 1.3e-210 736.9 577 67.2
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 1.7e-210 736.5 605 66.0
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 2.2e-210 736.1 585 66.0
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 3.7e-210 735.3 577 67.1
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 3.7e-210 735.3 604 65.1
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 3.7e-210 735.3 610 64.4
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 4.8e-210 734.9 597 65.3
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 6.3e-210 734.6 585 65.8
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 6.3e-210 734.6 585 65.8
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 6.3e-210 734.6 601 65.9
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 8.2e-210 734.2 533 72.0
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 1.8e-209 733.0 616 64.8
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 4.1e-209 731.9 571 66.9
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 9.1e-209 730.7 577 66.7
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 9.1e-209 730.7 577 66.7
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 9.1e-209 730.7 618 64.2
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 1.2e-208 730.3 581 64.9
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 1.0e-207 727.2 615 63.4
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.5e-206 723.4 606 63.2
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.2e-205 720.3 516 70.9
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 2.1e-205 719.5 579 65.8
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 1.0e-204 717.2 549 67.8
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 1.0e-204 717.2 549 67.8
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 7.7e-200 701.0 517 68.3
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.0e-199 700.7 533 67.2
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.5e-198 696.8 567 65.4
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 2.5e-198 696.0 529 67.5
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 3.6e-197 692.2 554 67.7
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 8.0e-197 691.0 513 68.6
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 2.0e-195 686.4 539 67.9
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 2.6e-195 686.0 608 62.8
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.8e-194 681.8 514 68.5
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.8e-194 681.8 621 58.9
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 2.0e-192 676.4 570 62.3
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 7.7e-192 674.5 605 59.8
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.3e-188 662.9 568 61.4
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 3.4e-187 659.1 479 70.4
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 1.7e-186 656.8 613 58.7
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 2.9e-183 646.0 410 79.3
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 5.6e-182 641.7 544 62.3
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.0e-180 637.5 522 63.2
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 5.2e-180 635.2 588 61.1
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 8.9e-180 634.4 402 78.1
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.4e-179 632.1 522 62.8
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 9.8e-179 630.9 402 78.4
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.9e-178 629.4 622 56.3
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 5.4e-177 625.2 406 78.3
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.0e-175 620.9 522 62.8
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.0e-175 620.9 492 66.1
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 2.5e-174 616.3 508 63.6
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 2.1e-165 586.6 501 60.9
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 1.9e-153 547.0 507 55.4
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 4.3e-150 535.8 470 63.2
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 3.4e-147 526.2 374 71.9
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 5.8e-147 525.4 471 58.2
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 7.6e-147 525.0 520 56.0
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.8e-124 450.7 456 55.3
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 5.5e-121 439.1 330 69.7
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 4.8e-117 426.0 339 66.4
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 1.1e-94 351.7 239 74.1
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 7.5e-62 242.7 153 79.7
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 3.7e-61 240.4 154 79.9
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 6.2e-48 196.4 158 62.0
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 1.1e-47 195.7 158 62.0
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 4.4e-46 190.3 155 61.9
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 2.9e-45 187.6 155 61.3
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 5.1e-34 150.2 98 75.5
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 7.3e-33 146.4 123 61.8
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 1.6e-24 118.6 91 62.6
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.8e-24 117.1 311 29.3
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.6e-22 109.8 289 29.8
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.7e-21 108.6 91 58.2
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 3.9e-18 97.4 127 42.5
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 3.9e-18 97.4 60 80.0
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 8.7e-18 96.3 190 32.6
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.4e-17 93.2 196 35.2
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 1.6e-16 92.0 115 47.0
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 1.1e-15 89.4 84 56.0
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 6.5e-13 80.1 70 65.7
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 1.1e-12 79.3 100 48.0
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 7.4e-09 66.6 74 52.7


User provided reference genes

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