Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g072920 Amaranthus hybridus HOM05D005795 ORTHO05D007200 2.7e-145 518.8 299 100.0
AUR62002291 Chenopodium quinoa HOM05D005795 ORTHO05D007200 2.0e-108 396.4 329 72.0
EL10Ac3g05921 Beta vulgaris HOM05D005795 ORTHO05D007200 1.3e-107 393.7 329 69.3
AUR62015400 Chenopodium quinoa HOM05D005795 ORTHO05D007200 1.1e-106 390.6 329 70.5
Hund03150 Selenicereus undatus HOM05D005795 ORTHO05D007200 3.9e-104 382.1 330 68.2
CiPaw.01G101200 Carya illinoinensis HOM05D005795 ORTHO05D007200 2.5e-90 336.3 331 56.8
Ciclev10021008m.g Citrus clementina HOM05D005795 ORTHO05D007200 9.4e-90 334.3 326 57.4
Rhsim02G0076300 Rhododendron simsii HOM05D005795 ORTHO05D007200 1.4e-88 330.5 332 53.3
Actinidia35971 Actinidia chinensis HOM05D005795 ORTHO05D007200 1.8e-88 330.1 329 55.0
QL10p048508 Quercus lobata HOM05D005795 ORTHO05D007200 7.4e-87 324.7 332 60.2
TWI38G2022 Tripterygium wilfordii HOM05D005795 ORTHO05D007200 2.2e-86 323.2 327 56.0
Atru.chr3.1532 Acer truncatum HOM05D005795 ORTHO05D007200 4.8e-86 322.0 326 60.1
Atru.chr3.1535 Acer truncatum HOM05D005795 ORTHO05D007200 4.8e-86 322.0 326 60.1
Manes.04G041300 Manihot esculenta HOM05D005795 ORTHO05D007200 6.3e-86 321.6 330 55.8
Nn1g09576 Nelumbo nucifera HOM05D005795 ORTHO05D007200 6.3e-86 321.6 323 56.0
Cfa015145 Carpinus fangiana HOM05D005795 ORTHO05D007200 8.2e-86 321.2 334 56.0
HPP92_013540 Vanilla planifolia HOM05D005795 ORTHO05D007200 5.3e-85 318.5 327 52.6
Dinv44196 Davidia involucrata HOM05D005795 ORTHO05D007200 1.2e-84 317.4 327 54.1
Duzib212G0505 Durio zibethinus HOM05D005795 ORTHO05D007200 2.0e-84 316.6 326 53.7
CSS0047301 Camellia sinensis var. sinensis HOM05D005795 ORTHO05D007200 2.6e-84 316.2 328 54.3
Actinidia11305 Actinidia chinensis HOM05D005795 ORTHO05D007200 3.4e-84 315.8 326 55.5
GSVIVG01010747001 Vitis vinifera HOM05D005795 ORTHO05D007200 1.7e-83 313.5 328 58.8
Prupe.1G191500 Prunus persica HOM05D005795 ORTHO05D007200 2.2e-83 313.2 326 59.5
THA.LOC104803670 Tarenaya hassleriana HOM05D005795 ORTHO05D007200 2.9e-83 312.8 329 53.8
Cc08_g05980 Coffea canephora HOM05D005795 ORTHO05D007200 3.8e-83 312.4 321 54.8
arahy.Tifrunner.gnm1.ann1.LQCR4Y Arachis hypogaea HOM05D005795 ORTHO05D007200 2.5e-82 309.7 326 50.9
Cc05_g13970 Coffea canephora HOM05D005795 ORTHO05D007200 3.2e-82 309.3 321 55.1
COL.COLO4_21665 Corchorus olitorius HOM05D005795 ORTHO05D007200 4.2e-82 308.9 326 54.6
Cpa.g.sc41.30 Carica papaya HOM05D005795 ORTHO05D007200 7.2e-82 308.1 325 58.5
Ca_01264_v3 Cicer arietinum L. HOM05D005795 ORTHO05D007200 9.4e-82 307.8 325 52.9
Haze_01529 Corylus avellana HOM05D005795 ORTHO05D007200 9.4e-82 307.8 329 53.8
SalBow3G4461 Salvia bowleyana HOM05D005795 ORTHO05D007200 9.4e-82 307.8 326 54.0
VMungo1080G0355 Vigna mungo HOM05D005795 ORTHO05D007200 1.6e-81 307.0 336 52.7
Thecc.04G314000 Theobroma cacao HOM05D005795 ORTHO05D007200 2.1e-81 306.6 326 53.1
MD04G1007300 Malus domestica HOM05D005795 ORTHO05D007200 2.7e-81 306.2 326 59.5
ClCG07G015610 Citrullus lanatus HOM05D005795 ORTHO05D007200 3.6e-81 305.8 326 52.1
Medtr2g098650 Medicago truncatula HOM05D005795 ORTHO05D007200 3.6e-81 305.8 326 53.7
Lalb_Chr22g0352181 Lupinus albus HOM05D005795 ORTHO05D007200 4.7e-81 305.4 322 52.2
TPR.G18871 Trifolium pratense HOM05D005795 ORTHO05D007200 4.7e-81 305.4 326 57.7
Lj6A56T30 Lonicera japonica HOM05D005795 ORTHO05D007200 6.1e-81 305.1 321 58.3
Lsat_1_v5_gn_6_55280 Lactuca sativa HOM05D005795 ORTHO05D007200 2.3e-80 303.1 350 46.6
CANSAT78G1297 Cannabis sativa HOM05D005795 ORTHO05D007200 3.9e-80 302.4 327 48.3
MELO3C017720.2 Cucumis melo HOM05D005795 ORTHO05D007200 3.9e-80 302.4 323 50.8
Glyma.15G030700 Glycine max HOM05D005795 ORTHO05D007200 3.9e-80 302.4 332 51.2
RcHm_v2.0_Chr4g0407031 Rosa chinensis HOM05D005795 ORTHO05D007200 1.5e-79 300.4 323 53.3
Sed0015939 Sechium edule HOM05D005795 ORTHO05D007200 2.0e-79 300.1 323 51.4
Lsat_1_v5_gn_9_14160 Lactuca sativa HOM05D005795 ORTHO05D007200 2.6e-79 299.7 350 46.0
PGR083G1909 Punica granatum HOM05D005795 ORTHO05D007200 2.6e-79 299.7 327 52.9
Sabra07G0103500 Salix brachista HOM05D005795 ORTHO05D007200 4.4e-79 298.9 326 52.5
Phvul.005G152400 Phaseolus vulgaris HOM05D005795 ORTHO05D007200 5.7e-79 298.5 339 56.6
Gohir.D05G287100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 7.4e-79 298.1 326 54.0
DCAR_003909 Daucus carota HOM05D005795 ORTHO05D007200 1.3e-78 297.4 326 52.5
Gohir.A05G286100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 3.7e-78 295.8 326 53.7
Aa31LG10G13730 Aethionema arabicum HOM05D005795 ORTHO05D007200 4.8e-78 295.4 324 52.2
CsaV3_4G003310 Cucumis sativus L. HOM05D005795 ORTHO05D007200 4.8e-78 295.4 323 50.5
Gorai.009G302100 Gossypium raimondii HOM05D005795 ORTHO05D007200 8.2e-78 294.7 326 53.7
Lj3g0002937 Lotus japonicus HOM05D005795 ORTHO05D007200 8.2e-78 294.7 318 52.8
Thhalv10025709m.g Eutrema salsugineum HOM05D005795 ORTHO05D007200 1.4e-77 293.9 327 51.7
Aqoxy2G04090 Aquilegia oxysepala HOM05D005795 ORTHO05D007200 2.4e-77 293.1 326 57.7
Glyma.13G343600 Glycine max HOM05D005795 ORTHO05D007200 5.3e-77 292.0 359 44.0
PSO675G7496 Papaver somniferum HOM05D005795 ORTHO05D007200 9.1e-77 291.2 327 52.6
Sp7g13790 Schrenkiella parvula HOM05D005795 ORTHO05D007200 2.6e-76 289.7 321 56.4
C01p27420 Brassica napus HOM05D005795 ORTHO05D007200 3.5e-76 289.3 327 52.0
PSO732G0188 Papaver somniferum HOM05D005795 ORTHO05D007200 7.7e-76 288.1 327 51.1
HanXRQChr07g0186111 Helianthus annuus HOM05D005795 ORTHO05D007200 1.0e-75 287.7 327 50.5
Potri.007G127500 Populus trichocarpa HOM05D005795 ORTHO05D007200 1.3e-75 287.3 330 56.1
MSTRG.9769 Avicennia marina HOM05D005795 ORTHO05D007200 1.7e-75 287.0 322 51.2
CARHR169760 Cardamine hirsuta HOM05D005795 ORTHO05D007200 1.7e-75 287.0 324 50.9
Migut.G00958 Erythranthe guttata HOM05D005795 ORTHO05D007200 2.9e-75 286.2 323 55.7
Peaxi162Scf00375g00059 Petunia axillaris HOM05D005795 ORTHO05D007200 5.0e-75 285.4 318 51.3
AL5G41280 Arabidopsis lyrata HOM05D005795 ORTHO05D007200 1.1e-74 284.3 324 50.9
A01p22030 Brassica napus HOM05D005795 ORTHO05D007200 1.1e-74 284.3 327 57.2
BraA01t02109Z Brassica rapa HOM05D005795 ORTHO05D007200 1.1e-74 284.3 327 57.2
AT3G59380 Arabidopsis thaliana HOM05D005795 ORTHO05D007200 1.4e-74 283.9 322 50.9
Carub.0005s2612 Capsella rubella HOM05D005795 ORTHO05D007200 9.4e-74 281.2 324 50.3
ECA233G5655 Erigeron canadensis HOM05D005795 ORTHO05D007200 2.1e-73 280.0 330 51.2
Eucgr.A00077 Eucalyptus grandis HOM05D005795 ORTHO05D007200 4.7e-73 278.9 319 51.1
BcaNung00265 Brassica carinata HOM05D005795 ORTHO05D007200 1.0e-72 277.7 324 55.6
FAN07G0438 Fragaria x ananassa HOM05D005795 ORTHO05D007200 1.0e-72 277.7 321 51.4
vmacro15646 Vaccinium macrocarpon HOM05D005795 ORTHO05D007200 1.0e-72 277.7 332 47.9
Os09g0514400 Oryza sativa ssp. japonica HOM05D005795 ORTHO05D007200 1.4e-72 277.3 327 50.2
ATR0743G276 Amborella trichopoda HOM05D005795 ORTHO05D007200 3.0e-72 276.2 327 50.5
FvH4_4g10680 Fragaria vesca HOM05D005795 ORTHO05D007200 5.2e-72 275.4 321 51.4
Sopen06g029770 Solanum pennellii HOM05D005795 ORTHO05D007200 2.2e-70 270.0 327 52.6
Zm00001eb102710 Zea mays HOM05D005795 ORTHO05D007200 2.2e-70 270.0 318 49.7
Solyc06g073390.3 Solanum lycopersicum HOM05D005795 ORTHO05D007200 8.2e-70 268.1 327 52.6
PGSC0003DMG400027009 Solanum tuberosum HOM05D005795 ORTHO05D007200 9.1e-69 264.6 314 52.2
CDE08G0443 Ceratophyllum demersum HOM05D005795 ORTHO05D007200 7.7e-68 261.5 319 56.1
SGA_v2.0_scaffold375G50253 Striga asiatica HOM05D005795 ORTHO05D007200 1.7e-67 260.4 323 48.0
unitig_22.g5744 Utricularia gibba HOM05D005795 ORTHO05D007200 2.2e-67 260.0 337 49.0
SGA_v2.0_scaffold136G34981 Striga asiatica HOM05D005795 ORTHO05D007200 2.9e-67 259.6 324 48.5
BcaC09g50250 Brassica carinata HOM05D005795 ORTHO05D007200 3.8e-67 259.2 303 51.8
Nitab4.5_0003132g0100 Nicotiana tabacum HOM05D005795 ORTHO05D007200 1.1e-66 257.7 298 53.4
SMO137G0277 Selaginella moellendorffii HOM05D005795 ORTHO05D007200 8.5e-59 231.5 330 47.3
BcaC06g33415 Brassica carinata HOM05D005795 ORTHO05D007200 4.7e-57 225.7 320 45.0
Pp3c9_24240 Physcomitrium patens HOM05D005795 ORTHO05D007200 1.4e-56 224.2 311 42.8
Mapoly0093s0047 Marchantia polymorpha HOM05D005795 ORTHO05D007200 1.5e-55 220.7 326 47.2
CAN.G65.180 Capsicum annuum HOM05D005795 ORTHO05D007200 7.5e-55 218.4 282 50.7
Sc03g0006720 Simmondsia chinensis HOM05D005795 ORTHO05D007200 1.3e-54 217.6 141 68.8
Hma1.2p1_0754F.1_g213060 Hydrangea macrophylla HOM05D005795 ORTHO05D007200 4.0e-48 196.1 141 63.8
TAR633G0878 Trochodendron aralioides HOM05D005795 ORTHO05D007200 1.7e-46 190.7 243 42.4
Psat1g007200 Pisum sativum HOM05D005795 ORTHO05D007200 7.0e-45 185.3 141 58.9
Oeu035829.1 Olea europaea HOM05D005795 ORTHO05D007200 4.5e-44 182.6 141 58.9
SHI30236 Sapria himalayana HOM05D005795 ORTHO05D007200 1.0e-43 181.4 253 41.9
Cc05_g03950 Coffea canephora HOM05D005795 ORTHO05D007200 1.7e-43 180.6 142 60.6
FAN12G2789 Fragaria x ananassa HOM05D005795 ORTHO05D007200 6.6e-43 178.7 135 59.3
Eucgr.A00272 Eucalyptus grandis HOM05D005795 ORTHO05D007200 1.1e-42 177.9 243 40.3
FAN12G0695 Fragaria x ananassa HOM05D005795 ORTHO05D007200 7.3e-42 175.3 133 59.4
Eucgr.A00076 Eucalyptus grandis HOM05D005795 ORTHO05D007200 3.1e-40 169.9 243 39.5
Nitab4.5_0005570g0030 Nicotiana tabacum HOM05D005795 ORTHO05D007200 1.7e-38 164.1 141 56.7
BolC1t02678H Brassica oleracea HOM05D005795 ORTHO05D000108 1.1e-37 161.4 141 53.9
BcaC06g32941 Brassica carinata HOM05D005795 ORTHO05D007200 9.2e-37 158.3 141 53.2
CBR_g21757 Chara braunii HOM05D005795 ORTHO05D007200 1.4e-32 144.4 340 39.1
AagrBONN_evm.TU.Sc2ySwM_228.2319 Anthoceros agrestis HOM05D005795 ORTHO05D007200 5.8e-31 139.0 210 53.8
Eucgr.L02278 Eucalyptus grandis HOM05D005795 ORTHO05D007200 3.2e-29 133.3 98 64.3
FAN17G0508 Fragaria x ananassa HOM05D005795 ORTHO05D007200 3.0e-27 126.7 94 66.0
Duzib151G0649 Durio zibethinus HOM05D005795 ORTHO05D007200 5.1e-27 125.9 104 57.7
TAR633G0840 Trochodendron aralioides HOM05D005795 ORTHO05D007200 8.6e-27 125.2 77 75.3
Haze_01530 Corylus avellana HOM05D005795 ORTHO05D007200 4.7e-25 119.4 82 70.7
MCO13G170 Micromonas commoda HOM05D005795 ORTHO05D007200 1.2e-20 104.8 104 48.1
AagrBONN_evm.TU.Sc2ySwM_117.2773 Anthoceros agrestis HOM05D005795 ORTHO05D007200 6.0e-20 102.4 139 38.8
SHI30240 Sapria himalayana HOM05D005795 ORTHO05D007200 1.0e-19 101.7 75 66.7
A05p02150 Brassica napus HOM05D005795 ORTHO05D007200 7.3e-18 95.5 61 68.9
Cpa.g.sc41.23 Carica papaya HOM05D005795 ORTHO05D007200 3.6e-17 93.2 87 51.7
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.2e-15 88.2 368 26.4
Cre01.g016950 Chlamydomonas reinhardtii HOM05D005795 ORTHO05D007200 2.6e-15 87.0 265 36.2
Cpa.g.sc41.24 Carica papaya HOM05D005795 ORTHO05D007200 1.3e-11 74.7 123 37.4
Gohir.A10G135766 Gossypium hirsutum HOM05D005795 ORTHO05D007200 1.2e-07 61.6 58 53.4


User provided reference genes

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