Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 0.0e+00 1337.4 694 100.0
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 1.7e-251 872.8 692 69.1
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 6.5e-227 791.2 696 64.8
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 8.5e-227 790.8 696 64.5
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 6.6e-187 658.3 740 54.3
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 7.3e-162 575.1 709 50.2
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 9.9e-159 564.7 746 48.0
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 4.6e-156 555.8 769 48.4
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 8.1e-153 545.0 735 48.3
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 7.8e-148 528.5 717 47.8
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 1.3e-147 527.7 709 47.8
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 1.1e-146 524.6 707 48.5
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 3.3e-146 523.1 768 46.2
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 2.8e-145 520.0 762 46.5
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 1.4e-144 517.7 708 47.9
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 4.5e-143 512.7 740 47.8
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 9.9e-143 511.5 749 46.1
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 2.9e-142 510.0 750 45.6
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 4.9e-142 509.2 745 44.6
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 6.4e-142 508.8 769 44.5
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 6.4e-142 508.8 708 47.5
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 8.4e-142 508.4 749 45.1
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 2.4e-141 506.9 735 44.8
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 4.2e-141 506.1 730 44.9
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 4.2e-141 506.1 722 47.4
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 9.3e-141 505.0 726 46.8
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 4.6e-140 502.7 706 48.4
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 6.0e-140 502.3 718 46.5
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 7.9e-140 501.9 740 45.1
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 7.9e-140 501.9 798 44.0
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 1.0e-139 501.5 739 46.3
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 3.0e-139 500.0 710 46.3
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 6.7e-139 498.8 735 44.8
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 6.7e-139 498.8 707 46.8
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 8.7e-139 498.4 716 46.8
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 2.5e-138 496.9 719 46.5
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 2.5e-138 496.9 744 45.7
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 1.6e-137 494.2 708 46.8
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 3.7e-137 493.0 721 47.2
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 1.8e-136 490.7 698 47.7
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 5.3e-136 489.2 712 46.8
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 1.2e-135 488.0 713 47.4
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 2.6e-135 486.9 721 44.9
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 1.3e-134 484.6 758 45.4
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 3.8e-134 483.0 715 46.9
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 3.8e-134 483.0 710 45.5
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 4.9e-134 482.6 708 45.9
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 8.4e-134 481.9 655 45.8
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 2.1e-132 477.2 750 43.7
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 2.1e-132 477.2 707 46.1
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 2.1e-132 477.2 759 44.0
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 1.0e-131 474.9 704 46.0
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 1.8e-131 474.2 698 45.8
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 1.1e-130 471.5 738 43.8
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 1.1e-130 471.5 733 44.2
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 1.5e-130 471.1 711 45.7
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 1.9e-130 470.7 666 46.1
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 3.3e-130 469.9 743 44.4
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 7.4e-130 468.8 706 44.2
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 7.4e-130 468.8 850 40.1
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 1.4e-128 464.5 713 44.7
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 4.0e-128 463.0 778 41.0
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 9.0e-128 461.8 743 42.0
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 1.5e-127 461.1 823 39.0
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 2.0e-127 460.7 763 42.6
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 2.0e-127 460.7 698 45.7
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 1.7e-126 457.6 712 45.5
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 1.9e-125 454.1 712 44.5
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 2.5e-125 453.8 719 44.6
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 4.2e-125 453.0 700 43.0
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 5.5e-125 452.6 756 43.4
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 7.1e-125 452.2 743 44.1
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 2.7e-124 450.3 767 41.7
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 2.3e-123 447.2 763 42.3
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 3.3e-122 443.4 738 42.7
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 1.3e-121 441.4 728 42.6
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 1.6e-121 441.0 758 40.1
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 3.7e-121 439.9 715 42.9
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 8.2e-121 438.7 719 43.1
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 1.1e-120 438.3 704 41.9
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 6.9e-120 435.6 477 51.8
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 1.2e-119 434.9 712 43.1
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 1.2e-119 434.9 722 42.9
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 2.0e-119 434.1 445 55.3
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 3.4e-119 433.3 732 41.0
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 7.6e-119 432.2 734 41.6
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 5.0e-118 429.5 703 41.5
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 1.4e-117 427.9 722 41.8
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 3.2e-117 426.8 710 42.5
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 5.5e-117 426.0 717 42.1
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 1.0e-115 421.8 705 42.4
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 3.0e-115 420.2 642 44.1
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 8.8e-115 418.7 501 49.5
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 7.4e-114 415.6 704 41.6
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 6.3e-113 412.5 709 42.3
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 2.0e-111 407.5 718 41.5
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 1.0e-110 405.2 707 41.3
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 2.9e-110 403.7 462 53.0
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 4.7e-108 396.4 715 41.1
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 7.9e-108 395.6 731 40.6
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 1.8e-107 394.4 448 50.0
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 1.8e-107 394.4 488 48.8
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 2.3e-107 394.0 726 40.1
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 3.9e-107 393.3 435 52.9
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 1.1e-106 391.7 706 40.4
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 2.2e-105 387.5 546 45.6
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 4.8e-105 386.3 426 52.8
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 6.3e-105 386.0 437 53.1
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 1.8e-104 384.4 440 53.2
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 2.6e-103 380.6 706 39.0
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 1.0e-102 378.6 446 50.9
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 5.2e-99 366.3 446 48.0
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 6.7e-99 365.9 447 48.1
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 3.1e-96 357.1 500 43.6
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 5.3e-88 329.7 610 37.9
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 2.2e-86 324.3 788 35.0
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 1.8e-83 314.7 761 35.2
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 2.4e-80 304.3 443 42.0
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 7.5e-74 282.7 464 40.9
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 3.3e-45 187.6 204 43.1
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 2.1e-44 184.9 451 33.7
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 2.1e-39 168.3 347 31.7
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 2.3e-38 164.9 269 34.9
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 2.3e-38 164.9 558 29.9
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 1.3e-22 112.5 343 35.3
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 1.8e-14 85.5 171 31.6
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 1.2e-10 72.8 162 37.0
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 1.5e-10 72.4 162 37.0
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 3.4e-10 71.2 49 59.2
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 4.5e-10 70.9 101 42.6
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 2.2e-09 68.6 101 42.6
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 1.6e-07 62.4 76 52.6


User provided reference genes

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