Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g072350 Amaranthus hybridus HOM05D006656 ORTHO05D008208 3.1e-87 325.1 164 100.0
EL10Ac3g04969 Beta vulgaris HOM05D006656 ORTHO05D008208 6.3e-72 274.2 162 82.7
AUR62015536 Chenopodium quinoa HOM05D006656 ORTHO05D008208 5.3e-71 271.2 190 75.3
AUR62002173 Chenopodium quinoa HOM05D006656 ORTHO05D008208 2.9e-69 265.4 152 86.2
ClCG05G004140 Citrullus lanatus HOM05D006656 ORTHO05D008208 6.1e-67 257.7 152 82.2
Hund11920 Selenicereus undatus HOM05D006656 ORTHO05D008208 1.2e-65 253.4 158 76.6
arahy.Tifrunner.gnm1.ann1.CLZM2Q Arachis hypogaea HOM05D006656 ORTHO05D008208 9.7e-65 250.4 152 78.9
Nn1g02903 Nelumbo nucifera HOM05D006656 ORTHO05D008208 1.7e-64 249.6 162 77.2
Sed0021014 Sechium edule HOM05D006656 ORTHO05D008208 2.2e-64 249.2 152 80.3
CANSAT78G1635 Cannabis sativa HOM05D006656 ORTHO05D008208 8.2e-64 247.3 159 76.7
CsaV3_3G011860 Cucumis sativus L. HOM05D006656 ORTHO05D008208 8.2e-64 247.3 152 80.9
Potri.010G068200 Populus trichocarpa HOM05D006656 ORTHO05D008208 8.2e-64 247.3 154 76.0
Hma1.2p1_0112F.1_g054500 Hydrangea macrophylla HOM05D006656 ORTHO05D008208 1.6e-62 243.0 154 77.3
CiPaw.01G180600 Carya illinoinensis HOM05D006656 ORTHO05D008208 2.0e-62 242.7 159 74.2
Ciclev10006077m.g Citrus clementina HOM05D006656 ORTHO05D008208 2.0e-62 242.7 152 77.6
MSTRG.4156 Avicennia marina HOM05D006656 ORTHO05D008208 3.5e-62 241.9 151 77.5
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 4.5e-62 241.5 149 77.2
Ca_12138_v3 Cicer arietinum L. HOM05D006656 ORTHO05D008208 4.5e-62 241.5 154 75.3
Eucgr.H02989 Eucalyptus grandis HOM05D006656 ORTHO05D008208 5.9e-62 241.1 160 73.8
Lalb_Chr03g0037311 Lupinus albus HOM05D006656 ORTHO05D008208 7.7e-62 240.7 153 75.2
Gohir.A09G228200 Gossypium hirsutum HOM05D006656 ORTHO05D008208 1.0e-61 240.4 159 74.2
Sc25g0003620 Simmondsia chinensis HOM05D006656 ORTHO05D008208 1.0e-61 240.4 159 74.2
Dinv27090 Davidia involucrata HOM05D006656 ORTHO05D008208 1.3e-61 240.0 154 76.6
Manes.13G093430 Manihot esculenta HOM05D006656 ORTHO05D008208 2.2e-61 239.2 159 73.0
Dinv29827 Davidia involucrata HOM05D006656 ORTHO05D008208 2.9e-61 238.8 162 72.8
Gohir.D09G229300 Gossypium hirsutum HOM05D006656 ORTHO05D008208 2.9e-61 238.8 161 72.7
Gorai.006G252000 Gossypium raimondii HOM05D006656 ORTHO05D008208 2.9e-61 238.8 161 72.7
TPR.G25151 Trifolium pratense HOM05D006656 ORTHO05D008208 2.9e-61 238.8 154 74.0
Glyma.10G005200 Glycine max HOM05D006656 ORTHO05D008208 3.8e-61 238.4 153 74.5
Lsat_1_v5_gn_1_75161 Lactuca sativa HOM05D006656 ORTHO05D008208 3.8e-61 238.4 154 74.7
Lj6g0027143 Lotus japonicus HOM05D006656 ORTHO05D008208 3.8e-61 238.4 154 73.4
Medtr1g041795 Medicago truncatula HOM05D006656 ORTHO05D008208 3.8e-61 238.4 154 72.7
PGR004G1080 Punica granatum HOM05D006656 ORTHO05D008208 3.8e-61 238.4 154 75.3
CSS0031602 Camellia sinensis var. sinensis HOM05D006656 ORTHO05D008208 6.5e-61 237.7 162 71.0
COL.COLO4_15934 Corchorus olitorius HOM05D006656 ORTHO05D008208 6.5e-61 237.7 151 73.5
MD13G1218700 Malus domestica HOM05D006656 ORTHO05D008208 6.5e-61 237.7 159 73.0
QL06p020043 Quercus lobata HOM05D006656 ORTHO05D008208 6.5e-61 237.7 158 73.4
Migut.G00494 Erythranthe guttata HOM05D006656 ORTHO05D008208 8.5e-61 237.3 151 76.2
SalBow3G1837 Salvia bowleyana HOM05D006656 ORTHO05D008208 8.5e-61 237.3 154 74.0
PSO210G7176 Papaver somniferum HOM05D006656 ORTHO05D008208 1.1e-60 236.9 151 76.8
DCAR_030758 Daucus carota HOM05D000730 ORTHO05D008208 1.9e-60 236.1 147 74.8
HanXRQChr01g0022881 Helianthus annuus HOM05D006656 ORTHO05D008208 2.5e-60 235.7 151 76.2
Cpa.g.sc44.21 Carica papaya HOM05D006656 ORTHO05D008208 3.2e-60 235.3 152 75.0
CDE02G2281 Ceratophyllum demersum HOM05D006656 ORTHO05D008208 3.2e-60 235.3 157 74.5
RcHm_v2.0_Chr4g0394701 Rosa chinensis HOM05D006656 ORTHO05D008208 3.2e-60 235.3 157 73.2
Nitab4.5_0013448g0010 Nicotiana tabacum HOM05D006656 ORTHO05D008208 4.2e-60 235.0 156 72.4
PSO447G0273 Papaver somniferum HOM05D006656 ORTHO05D008208 4.2e-60 235.0 151 76.2
FvH4_4g04220 Fragaria vesca HOM05D006656 ORTHO05D008208 5.5e-60 234.6 157 73.2
Solyc09g090430.3 Solanum lycopersicum HOM05D006656 ORTHO05D008208 5.5e-60 234.6 156 71.8
Sopen09g033350 Solanum pennellii HOM05D006656 ORTHO05D008208 5.5e-60 234.6 156 71.8
HanXRQChr04g0115371 Helianthus annuus HOM05D006656 ORTHO05D008208 7.2e-60 234.2 151 74.8
CAN.G220.47 Capsicum annuum HOM05D006656 ORTHO05D008208 9.4e-60 233.8 152 73.0
Phvul.007G275000 Phaseolus vulgaris HOM05D006656 ORTHO05D008208 9.4e-60 233.8 154 72.7
ECA248G3216 Erigeron canadensis HOM05D006656 ORTHO05D008208 1.2e-59 233.4 152 73.7
Nitab4.5_0001425g0100 Nicotiana tabacum HOM05D006656 ORTHO05D008208 1.6e-59 233.0 152 73.7
Thecc.04G260300 Theobroma cacao HOM05D006656 ORTHO05D008208 1.6e-59 233.0 162 70.4
PGSC0003DMG400017160 Solanum tuberosum HOM05D006656 ORTHO05D008208 2.7e-59 232.3 156 71.2
Os10g0471300 Oryza sativa ssp. japonica HOM05D006656 ORTHO05D008208 3.6e-59 231.9 156 71.8
TWI09G0269 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 3.6e-59 231.9 156 72.4
TWI09G1522 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 3.6e-59 231.9 156 72.4
arahy.Tifrunner.gnm1.ann1.DD5QG4 Arachis hypogaea HOM05D006656 ORTHO05D008208 4.7e-59 231.5 145 75.2
Peaxi162Scf00602g00515 Petunia axillaris HOM05D006656 ORTHO05D008208 8.0e-59 230.7 154 72.7
Rhsim02G0042500 Rhododendron simsii HOM05D006656 ORTHO05D008208 8.0e-59 230.7 153 73.9
FAN12G3008 Fragaria x ananassa HOM05D006656 ORTHO05D008208 1.4e-58 229.9 157 71.3
HPP92_001387 Vanilla planifolia HOM05D006656 ORTHO05D008208 1.8e-58 229.6 151 77.5
arahy.Tifrunner.gnm1.ann1.C3VAXP Arachis hypogaea HOM05D006656 ORTHO05D008208 3.0e-58 228.8 146 74.0
MBI07_g22362_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 4.0e-58 228.4 156 73.7
Sabra10G0038900 Salix brachista HOM05D006656 ORTHO05D008208 6.8e-58 227.6 144 75.0
Aqoxy2G03715 Aquilegia oxysepala HOM05D006656 ORTHO05D008208 8.8e-58 227.3 151 71.5
MBI14_g30459_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.2e-57 226.9 156 72.4
Prupe.1G045500 Prunus persica HOM05D006656 ORTHO05D008208 1.2e-57 226.9 151 72.2
Zm00001eb046120 Zea mays HOM05D006656 ORTHO05D008208 1.2e-57 226.9 163 71.2
BcaB06g26499 Brassica carinata HOM05D006656 ORTHO05D008208 2.6e-57 225.7 152 73.0
Sp3g21170 Schrenkiella parvula HOM05D006656 ORTHO05D008208 3.4e-57 225.3 152 73.0
SpUn0047_0050 Schrenkiella parvula HOM05D006656 ORTHO05D008208 3.4e-57 225.3 152 73.0
Carub.0003s2372 Capsella rubella HOM05D006656 ORTHO05D008208 4.4e-57 224.9 152 73.0
Atru.chr4.1959 Acer truncatum HOM05D006656 ORTHO05D008208 5.7e-57 224.6 150 73.3
BraA07t28683Z Brassica rapa HOM05D006656 ORTHO05D008208 5.7e-57 224.6 152 72.4
BcaC06g35534 Brassica carinata HOM05D006656 ORTHO05D008208 7.5e-57 224.2 152 72.4
A07p08920 Brassica napus HOM05D006656 ORTHO05D008208 7.5e-57 224.2 152 71.7
C07p13760 Brassica napus HOM05D006656 ORTHO05D008208 7.5e-57 224.2 152 72.4
BolC7t41871H Brassica oleracea HOM05D006656 ORTHO05D008208 7.5e-57 224.2 152 72.4
THA.LOC104804764 Tarenaya hassleriana HOM05D006656 ORTHO05D008208 7.5e-57 224.2 152 71.7
Psat6g137160 Pisum sativum HOM05D006656 ORTHO05D008208 9.8e-57 223.8 146 71.9
FAN17G2925 Fragaria x ananassa HOM05D006656 ORTHO05D008208 1.3e-56 223.4 150 72.7
AT3G23490 Arabidopsis thaliana HOM05D006656 ORTHO05D008208 2.2e-56 222.6 152 71.7
AL3G38180 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 2.8e-56 222.2 152 71.7
Thhalv10021585m.g Eutrema salsugineum HOM05D006656 ORTHO05D008208 2.8e-56 222.2 152 71.7
vmacro15465 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 1.4e-55 219.9 148 73.0
VMungo0720G2665 Vigna mungo HOM05D006656 ORTHO05D008208 1.4e-55 219.9 146 71.9
ATR0736G110 Amborella trichopoda HOM05D006656 ORTHO05D008208 2.4e-55 219.2 156 67.3
SGA_v2.0_scaffold67G22735 Striga asiatica HOM05D006656 ORTHO05D008208 9.1e-55 217.2 197 59.9
Aa31LG8G9940 Aethionema arabicum HOM05D006656 ORTHO05D008208 1.0e-53 213.8 144 71.5
MBI07_g15427_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 2.5e-52 209.1 156 69.2
Lj3A676G52 Lonicera japonica HOM05D006656 ORTHO05D008208 2.8e-51 205.7 181 60.2
Pp3c19_11440 Physcomitrium patens HOM05D006656 ORTHO05D008208 1.4e-50 203.4 155 63.9
vmacro15466 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 9.2e-47 190.7 159 61.6
Mapoly0080s0009 Marchantia polymorpha HOM05D006656 ORTHO05D008208 7.8e-46 187.6 159 57.9
MELO3C006399.2 Cucumis melo HOM05D000603 ORTHO05D003510 2.8e-43 179.1 144 65.3
AagrBONN_evm.TU.Sc2ySwM_344.2747 Anthoceros agrestis HOM05D006656 ORTHO05D008208 8.0e-43 177.6 147 58.5
GSVIVG01027874001 Vitis vinifera HOM05D006656 ORTHO05D008208 9.2e-39 164.1 91 83.5
CBR_g36666 Chara braunii HOM05D006656 ORTHO05D008208 2.7e-38 162.5 154 50.6
Cc03_g05940 Coffea canephora HOM05D006656 ORTHO05D008208 3.5e-38 162.2 91 80.2
HPP92_000029 Vanilla planifolia HOM05D006656 ORTHO05D008208 1.0e-37 160.6 170 57.6
Duzib151G0018 Durio zibethinus HOM05D006656 ORTHO05D008208 5.0e-37 158.3 122 63.9
Cfa014756 Carpinus fangiana HOM05D006656 ORTHO05D008208 1.1e-36 157.1 104 74.0
CBR_g71972 Chara braunii HOM05D006656 ORTHO05D008208 1.2e-35 153.7 152 52.0
AL242U10020 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 2.1e-35 152.9 108 71.3
PRCOL_00005673 Prasinoderma coloniale HOM05D006656 ORTHO05D008208 4.0e-34 148.7 152 48.0
Haze_11433 Corylus avellana HOM05D006656 ORTHO05D008208 1.4e-31 140.2 253 38.3
SMO271G0046 Selaginella moellendorffii HOM05D006656 ORTHO05D008208 8.1e-27 124.4 137 44.5
arahy.Tifrunner.gnm1.ann1.USJ12Z Arachis hypogaea HOM05D006656 ORTHO05D008208 4.4e-25 118.6 80 72.5
Nitab4.5_0000014g0170 Nicotiana tabacum HOM05D006656 ORTHO05D008208 3.1e-18 95.9 74 63.5
Gohir.A02G041301 Gossypium hirsutum HOM05D006656 ORTHO05D008208 6.8e-18 94.7 63 69.8
AagrBONN_evm.TU.Sc2ySwM_344.2745 Anthoceros agrestis HOM05D006656 ORTHO05D008208 3.5e-14 82.4 85 50.6
BcaB02g10054 Brassica carinata HOM05D006656 ORTHO05D008208 1.3e-13 80.5 64 62.5
BcaB06g27105 Brassica carinata HOM05D006656 ORTHO05D008208 2.5e-12 76.3 62 58.1
BolC2t11169H Brassica oleracea HOM05D006656 ORTHO05D008208 1.6e-11 73.6 55 63.6
BcaC09g51699 Brassica carinata HOM05D006656 ORTHO05D008208 3.6e-11 72.4 45 71.1
MCO04G243 Micromonas commoda HOM05D006656 ORTHO05D008208 6.2e-11 71.6 147 32.7
C05p47480 Brassica napus HOM05D006656 ORTHO05D008208 3.8e-08 62.4 37 75.7
C03p47720 Brassica napus HOM05D006656 ORTHO05D008208 2.4e-07 59.7 37 70.3
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 5.4e-07 58.5 50 64.0


User provided reference genes

Program Settings