Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.2e-67 259.6 126 100.0
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 7.3e-28 127.5 122 55.7
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 4.7e-27 124.8 127 57.5
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 4.4e-25 118.2 123 56.1
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.7e-24 116.3 123 56.1
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.6e-22 109.8 126 53.2
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.9e-21 105.1 127 48.8
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 8.7e-21 104.0 126 47.6
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.1e-20 103.6 123 49.6
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 1.5e-20 103.2 125 48.0
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 4.3e-20 101.7 120 49.2
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 5.6e-20 101.3 120 50.8
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 1.3e-19 100.1 126 50.0
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.1e-18 97.1 120 46.7
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 2.4e-18 95.9 124 46.0
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 1.5e-17 93.2 124 46.8
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.5e-17 93.2 123 47.2
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 2.0e-17 92.8 123 43.1
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 4.4e-17 91.7 124 46.8
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.3e-16 90.1 120 43.3
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 1.7e-16 89.7 126 42.1
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 2.9e-16 89.0 123 42.3
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 2.9e-16 89.0 130 44.6
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 4.9e-16 88.2 130 45.4
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 6.4e-16 87.8 119 44.5
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 6.4e-16 87.8 109 45.9
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 8.4e-16 87.4 114 45.6
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 8.4e-16 87.4 121 46.3
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 1.1e-15 87.0 116 48.3
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.1e-15 87.0 130 44.6
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.1e-15 87.0 130 44.6
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.1e-15 87.0 133 42.9
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 1.4e-15 86.7 130 43.8
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.4e-15 86.7 131 42.7
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.4e-15 85.9 123 44.7
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 3.2e-15 85.5 123 46.3
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 4.2e-15 85.1 125 44.8
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 5.4e-15 84.7 120 43.3
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 5.4e-15 84.7 126 42.9
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 7.1e-15 84.3 162 38.3
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 7.1e-15 84.3 127 46.5
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 9.3e-15 84.0 128 43.0
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.2e-14 83.6 128 45.3
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 1.6e-14 83.2 82 52.4
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.6e-14 83.2 122 42.6
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 2.7e-14 82.4 122 42.6
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 4.6e-14 81.6 134 41.8
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 4.6e-14 81.6 123 41.5
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 6.0e-14 81.3 130 41.5
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 7.9e-14 80.9 124 43.5
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.3e-13 80.1 121 42.1
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.3e-13 80.1 82 50.0
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.7e-13 79.7 122 43.4
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 2.3e-13 79.3 119 42.9
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 2.3e-13 79.3 124 42.7
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 2.3e-13 79.3 121 42.1
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 3.0e-13 79.0 83 51.8
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 3.0e-13 79.0 125 43.2
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 3.9e-13 78.6 121 41.3
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 3.9e-13 78.6 87 49.4
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 3.9e-13 78.6 122 40.2
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 5.1e-13 78.2 126 42.9
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 5.1e-13 78.2 123 39.0
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 5.1e-13 78.2 129 40.3
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 5.1e-13 78.2 122 42.6
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 6.6e-13 77.8 125 40.8
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 6.6e-13 77.8 125 40.8
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 6.6e-13 77.8 125 40.8
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 6.6e-13 77.8 125 40.8
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 6.6e-13 77.8 121 43.8
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.1e-12 77.0 124 41.9
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 1.1e-12 77.0 121 43.0
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 1.5e-12 76.6 131 42.0
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 1.5e-12 76.6 128 41.4
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 1.5e-12 76.6 127 43.3
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.5e-12 76.6 125 43.2
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.5e-12 76.6 90 51.1
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 1.5e-12 76.6 122 38.5
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 2.5e-12 75.9 123 40.7
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 2.5e-12 75.9 124 43.5
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 3.3e-12 75.5 130 40.8
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 3.3e-12 75.5 106 44.3
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 4.3e-12 75.1 120 40.8
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 5.6e-12 74.7 129 39.5
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 7.4e-12 74.3 128 39.1
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 7.4e-12 74.3 132 42.4
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 9.6e-12 73.9 117 41.0
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 9.6e-12 73.9 115 43.5
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 1.3e-11 73.6 119 41.2
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 1.6e-11 73.2 85 49.4
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 1.6e-11 73.2 132 35.6
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.6e-11 73.2 121 41.3
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 1.6e-11 73.2 129 40.3
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 1.6e-11 73.2 124 36.3
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 2.8e-11 72.4 131 41.2
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 3.6e-11 72.0 93 44.1
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 3.6e-11 72.0 93 44.1
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 6.2e-11 71.2 129 39.5
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 6.2e-11 71.2 117 39.3
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 6.2e-11 71.2 134 38.8
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 8.1e-11 70.9 83 50.6
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 1.8e-10 69.7 83 47.0
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 2.4e-10 69.3 134 41.0
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 4.0e-10 68.6 129 40.3
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 6.9e-10 67.8 122 36.1
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 6.9e-10 67.8 131 35.1
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 6.9e-10 67.8 137 35.8
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.2e-09 67.0 122 36.9
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 1.2e-09 67.0 124 37.1
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.0e-09 66.2 118 37.3
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 3.4e-09 65.5 90 42.2
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 3.4e-09 65.5 109 42.2
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 5.8e-09 64.7 123 38.2
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.7e-08 63.2 118 36.4
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 2.2e-08 62.8 103 40.8
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 2.9e-08 62.4 101 40.6
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 3.8e-08 62.0 100 36.0
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 4.9e-08 61.6 115 38.3
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 6.4e-08 61.2 120 35.8
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 6.4e-08 61.2 116 37.9
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 1.1e-07 60.5 97 39.2
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 1.4e-07 60.1 86 43.0
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 1.4e-07 60.1 97 39.2
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 1.4e-07 60.1 97 39.2
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 1.4e-07 60.1 125 36.0
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 1.9e-07 59.7 89 39.3
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 1.9e-07 59.7 111 38.7
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 1.9e-07 59.7 122 35.2
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 2.4e-07 59.3 94 42.6
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 4.2e-07 58.5 89 39.3
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 4.2e-07 58.5 97 40.2
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 4.2e-07 58.5 97 40.2
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 4.2e-07 58.5 89 39.3
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 4.2e-07 58.5 100 37.0
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 4.2e-07 58.5 105 35.2
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 5.5e-07 58.2 99 37.4
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 5.5e-07 58.2 96 38.5
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 7.1e-07 57.8 97 41.2
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 9.3e-07 57.4 96 37.5
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 9.3e-07 57.4 96 37.5
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 9.3e-07 57.4 85 41.2
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 1.2e-06 57.0 93 37.6
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 1.2e-06 57.0 84 40.5
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 1.2e-06 57.0 84 40.5
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 2.7e-06 55.8 76 40.8
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 2.7e-06 55.8 86 40.7
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 4.6e-06 55.1 85 36.5


User provided reference genes

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