Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 3.4e-88 328.2 153 100.0
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 9.4e-78 293.5 153 89.5
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 4.6e-77 291.2 146 89.7
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 1.0e-76 290.0 146 89.0
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 8.8e-76 287.0 146 87.7
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 1.8e-68 262.7 146 80.8
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 1.6e-64 249.6 147 76.9
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 3.5e-64 248.4 146 76.0
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 5.9e-64 247.7 147 76.2
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 7.7e-64 247.3 146 74.0
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 7.7e-64 247.3 146 74.0
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 7.7e-64 247.3 146 74.0
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 1.0e-63 246.9 146 74.0
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 1.3e-63 246.5 146 74.0
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 2.2e-63 245.7 146 73.3
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 2.9e-63 245.4 146 74.7
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 9.4e-62 240.4 146 72.6
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 1.2e-61 240.0 140 75.0
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 1.6e-61 239.6 146 71.9
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 1.6e-61 239.6 146 73.3
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 2.1e-61 239.2 148 71.6
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 2.1e-61 239.2 146 71.9
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 4.7e-61 238.0 146 72.6
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 8.0e-61 237.3 148 73.6
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 1.4e-60 236.5 146 69.9
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 1.4e-60 236.5 147 72.8
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 1.4e-60 236.5 146 70.5
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 1.4e-60 236.5 146 70.5
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 1.4e-60 236.5 146 70.5
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 4.0e-60 235.0 147 72.1
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 4.0e-60 235.0 147 71.4
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 5.2e-60 234.6 146 72.6
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 5.2e-60 234.6 147 70.7
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 6.7e-60 234.2 148 71.6
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 8.8e-60 233.8 146 70.5
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 1.1e-59 233.4 146 69.2
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.1e-59 233.4 145 70.3
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 1.5e-59 233.0 147 70.1
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.0e-59 232.6 147 72.8
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 2.0e-59 232.6 147 72.8
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 2.0e-59 232.6 150 72.0
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 2.6e-59 232.3 146 71.2
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 2.6e-59 232.3 146 71.2
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 3.3e-59 231.9 137 74.5
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 5.7e-59 231.1 147 70.7
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 7.5e-59 230.7 147 71.4
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 9.7e-59 230.3 146 69.9
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 1.3e-58 229.9 140 73.6
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 2.8e-58 228.8 148 72.3
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 2.8e-58 228.8 148 71.6
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 2.8e-58 228.8 146 69.9
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 3.7e-58 228.4 146 67.8
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 3.7e-58 228.4 148 68.9
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 3.7e-58 228.4 147 71.4
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 4.8e-58 228.0 147 70.7
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 8.2e-58 227.3 148 70.9
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 8.2e-58 227.3 147 70.1
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 8.2e-58 227.3 146 68.5
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 1.1e-57 226.9 146 71.2
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.1e-57 226.9 147 68.0
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.4e-57 226.5 150 67.3
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.4e-57 226.5 148 70.3
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 1.4e-57 226.5 145 69.7
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.4e-57 225.7 146 68.5
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 2.4e-57 225.7 138 70.3
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 4.1e-57 224.9 144 69.4
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 4.1e-57 224.9 140 70.7
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 5.3e-57 224.6 149 67.8
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 5.3e-57 224.6 147 69.4
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 7.0e-57 224.2 146 68.5
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 7.0e-57 224.2 147 70.1
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 7.0e-57 224.2 147 70.1
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 1.6e-56 223.0 146 67.1
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 1.6e-56 223.0 146 68.5
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 2.0e-56 222.6 153 64.7
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 2.0e-56 222.6 146 67.1
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 3.5e-56 221.9 147 66.7
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 3.5e-56 221.9 146 69.2
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 3.5e-56 221.9 146 68.5
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 3.5e-56 221.9 148 68.9
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 3.5e-56 221.9 147 67.3
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 3.5e-56 221.9 146 69.2
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 3.5e-56 221.9 146 68.5
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 4.5e-56 221.5 146 66.4
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 4.5e-56 221.5 149 69.1
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 7.7e-56 220.7 146 67.1
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 7.7e-56 220.7 146 67.1
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 7.7e-56 220.7 152 67.8
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 1.7e-55 219.5 149 68.5
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 1.7e-55 219.5 146 68.5
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 1.7e-55 219.5 148 69.6
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 2.2e-55 219.2 150 68.7
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 3.8e-55 218.4 146 66.4
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 5.0e-55 218.0 146 66.4
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 5.0e-55 218.0 146 64.4
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 6.5e-55 217.6 146 67.1
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 8.5e-55 217.2 131 71.0
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 8.5e-55 217.2 146 65.1
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 1.1e-54 216.9 149 67.1
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 1.1e-54 216.9 146 65.1
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 2.5e-54 215.7 148 68.2
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 2.5e-54 215.7 148 66.2
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 4.2e-54 214.9 137 70.1
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 4.2e-54 214.9 137 70.1
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 5.5e-54 214.5 148 67.6
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 5.5e-54 214.5 152 61.8
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 1.2e-53 213.4 139 68.3
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.2e-53 213.4 140 68.6
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 2.7e-53 212.2 137 70.1
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 2.7e-53 212.2 137 70.1
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 2.7e-53 212.2 146 63.0
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 8.0e-53 210.7 132 71.2
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 8.0e-53 210.7 132 71.2
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.4e-52 209.9 139 69.8
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 1.8e-52 209.5 150 65.3
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 2.3e-52 209.1 150 67.3
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 3.0e-52 208.8 132 70.5
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 8.8e-52 207.2 147 64.6
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 2.6e-51 205.7 142 66.2
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 3.4e-51 205.3 150 64.7
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 3.4e-51 205.3 150 64.7
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 3.4e-51 205.3 147 63.9
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 5.7e-51 204.5 146 65.1
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 9.8e-51 203.8 140 70.0
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.7e-50 203.0 117 76.1
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 4.8e-50 201.4 150 66.0
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 6.3e-50 201.1 130 69.2
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 2.4e-49 199.1 150 64.7
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 2.4e-49 199.1 150 64.7
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 2.4e-49 199.1 150 64.7
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 5.4e-49 198.0 150 64.7
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 2.7e-48 195.7 148 64.9
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 2.7e-48 195.7 148 64.9
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 2.7e-48 195.7 148 64.9
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 3.5e-48 195.3 125 67.2
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 5.9e-48 194.5 151 58.3
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 1.0e-47 193.7 146 64.4
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 1.0e-47 193.7 147 63.3
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 5.0e-47 191.4 134 65.7
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 1.1e-46 190.3 155 63.2
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 2.3e-44 182.6 125 65.6
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.5e-43 179.9 132 62.9
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 3.3e-38 162.2 101 71.3
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 8.9e-36 154.1 101 67.3
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 2.0e-35 152.9 146 51.4
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 1.3e-34 150.2 147 51.0
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 2.2e-34 149.4 146 54.1
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 2.9e-34 149.1 97 71.1
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.1e-33 147.1 96 70.8
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 3.0e-31 139.0 137 51.1
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 4.6e-24 115.2 107 50.5
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 6.2e-21 104.8 68 69.1
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 4.4e-19 98.6 74 60.8
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 3.7e-18 95.5 127 43.3
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 4.9e-18 95.1 94 48.9
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 8.9e-12 74.3 99 38.4
PRCOL_00007052 Prasinoderma coloniale HOM05D004660 ORTHO05D005474 7.8e-08 61.2 72 38.9
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 1.1e-06 57.4 37 59.5


User provided reference genes

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