Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 0.0e+00 2280.0 1246 100.0
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 7.4e-298 1027.7 1324 49.0
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 7.2e-293 1011.1 1387 46.0
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 6.9e-288 994.6 1336 47.4
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 2.0e-266 923.3 1336 45.1
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 4.4e-117 427.2 1358 30.3
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 8.5e-52 210.3 1139 24.9
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 5.3e-46 191.0 1124 24.6
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 3.2e-35 155.2 1167 25.8
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 3.6e-34 151.8 1184 24.3
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 8.8e-33 147.1 1071 25.5
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 5.7e-32 144.4 1159 24.6
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 1.7e-31 142.9 1049 26.1
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 4.8e-31 141.4 1189 25.6
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.1e-30 140.2 1146 24.9
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.4e-30 139.0 1146 24.6
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 4.1e-30 138.3 1183 25.7
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 5.9e-29 134.4 1147 24.2
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 5.0e-28 131.3 1157 25.0
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 5.5e-27 127.9 1141 23.3
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 6.1e-26 124.4 986 25.4
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 1.0e-25 123.6 1182 23.8
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 3.1e-22 112.1 691 25.3
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 3.1e-22 112.1 1075 25.0
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 7.0e-22 110.9 638 23.7
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 1.6e-21 109.8 668 25.4
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 3.5e-21 108.6 660 24.7
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 1.0e-20 107.1 1164 24.2
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 1.3e-20 106.7 646 24.8
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 1.3e-20 106.7 640 24.5
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 1.7e-20 106.3 1059 24.9
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 1.7e-20 106.3 1071 25.3
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 1.5e-19 103.2 639 22.8
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 3.3e-19 102.1 565 24.1
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 7.3e-19 100.9 1206 24.2
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 7.3e-19 100.9 414 26.8
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 7.3e-19 100.9 1026 24.3
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 6.1e-18 97.8 426 25.6
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 8.0e-18 97.4 630 23.5
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 2.3e-17 95.9 446 26.9
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 2.3e-17 95.9 472 24.4
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 8.9e-17 94.0 445 27.0
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 2.0e-16 92.8 629 24.2
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.6e-16 92.4 390 27.2
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 2.6e-16 92.4 566 23.9
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 5.7e-16 91.3 598 23.9
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 1.3e-15 90.1 1004 24.1
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.3e-15 90.1 255 29.8
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 1.7e-15 89.7 1024 22.9
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 1.7e-15 89.7 538 25.7
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 6.4e-15 87.8 471 25.5
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 6.4e-15 87.8 566 23.3
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 8.3e-15 87.4 626 24.9
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 1.4e-14 86.7 659 23.8
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 2.4e-14 85.9 1136 21.7
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 2.4e-14 85.9 662 23.6
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 4.1e-14 85.1 915 24.6
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 5.4e-14 84.7 740 22.0
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 5.4e-14 84.7 740 22.0
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 1.2e-13 83.6 1179 22.2
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 3.5e-13 82.0 412 24.5
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 1.7e-12 79.7 424 24.1
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 3.9e-12 78.6 926 23.5
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 3.9e-12 78.6 527 26.4
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 5.0e-12 78.2 644 23.9
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 5.0e-12 78.2 534 24.5
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 1.1e-11 77.0 459 24.8
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 1.9e-11 76.3 685 20.4
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 4.3e-11 75.1 294 26.9
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 4.3e-11 75.1 411 24.6
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 4.3e-11 75.1 671 24.0
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 9.5e-11 73.9 473 24.9
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 2.1e-10 72.8 226 30.1
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 2.1e-10 72.8 1020 21.5
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 3.6e-10 72.0 385 24.4
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 6.2e-10 71.2 1015 22.4
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 1.4e-09 70.1 1000 22.2
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 3.1e-09 68.9 505 23.8
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 4.0e-09 68.6 234 27.8
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 4.0e-09 68.6 234 27.8
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 4.0e-09 68.6 234 27.8
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 4.0e-09 68.6 225 28.4
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 4.0e-09 68.6 674 21.1
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 6.8e-09 67.8 206 28.6
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 6.8e-09 67.8 196 27.6
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 8.9e-09 67.4 982 22.3
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 1.2e-08 67.0 491 25.5
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 1.5e-08 66.6 170 30.6
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 1.5e-08 66.6 1168 22.3
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 5.8e-08 64.7 378 23.5
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 7.5e-08 64.3 58 60.3
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 7.5e-08 64.3 508 22.6
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 1.3e-07 63.5 1019 23.5
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 1.7e-07 63.2 1013 21.1
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 2.2e-07 62.8 100 36.0
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 2.2e-07 62.8 231 27.7
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 2.9e-07 62.4 492 22.4
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 3.7e-07 62.0 509 23.4
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 4.9e-07 61.6 167 25.7
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 4.9e-07 61.6 167 25.7
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 4.9e-07 61.6 258 24.4
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 6.4e-07 61.2 364 23.6
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 1.1e-06 60.5 298 26.2
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 1.1e-06 60.5 442 21.7
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 1.9e-06 59.7 198 30.8
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 2.4e-06 59.3 291 25.4
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 2.4e-06 59.3 164 25.6
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 2.4e-06 59.3 294 26.5
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 2.4e-06 59.3 174 25.9
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 2.4e-06 59.3 1025 23.7
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 3.2e-06 58.9 178 28.1
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 3.2e-06 58.9 187 27.8
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 3.2e-06 58.9 298 25.8
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 3.2e-06 58.9 187 27.8
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 3.2e-06 58.9 1021 21.6
CDE04G2546 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 4.1e-06 58.5 504 23.4


User provided reference genes

Program Settings