Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g070840 Amaranthus hybridus HOM05D001799 ORTHO05D001655 4.6e-76 287.7 137 100.0
Ah.13g070830 Amaranthus hybridus HOM05D001799 ORTHO05D001655 3.6e-36 155.2 147 56.5
AUR62005982 Chenopodium quinoa HOM05D001799 ORTHO05D001655 1.4e-24 116.7 128 50.0
AUR62028088 Chenopodium quinoa HOM05D001799 ORTHO05D001655 9.1e-24 114.0 99 59.6
EL10Ac3g05164 Beta vulgaris HOM05D001799 ORTHO05D001655 4.7e-20 101.7 92 55.4
AUR62005983 Chenopodium quinoa HOM05D001799 ORTHO05D001655 2.3e-19 99.4 92 53.3
AUR62028089 Chenopodium quinoa HOM05D001799 ORTHO05D001655 6.8e-19 97.8 135 43.0
AUR62028087 Chenopodium quinoa HOM05D001799 ORTHO05D001655 1.2e-18 97.1 92 52.2
Thhalv10015504m.g Eutrema salsugineum HOM05D001799 ORTHO05D001655 1.1e-16 90.5 99 45.5
Hund21067 Selenicereus undatus HOM05D001799 ORTHO05D001655 4.1e-16 88.6 125 41.6
arahy.Tifrunner.gnm1.ann1.L3LS3U Arachis hypogaea HOM05D001799 ORTHO05D001655 5.3e-16 88.2 107 42.1
AUR62005980 Chenopodium quinoa HOM05D001799 ORTHO05D001655 1.2e-15 87.0 84 48.8
Hund21068 Selenicereus undatus HOM05D001799 ORTHO05D001655 1.2e-15 87.0 90 46.7
AUR62005981 Chenopodium quinoa HOM05D001799 ORTHO05D001655 2.7e-15 85.9 164 36.6
Hund21066 Selenicereus undatus HOM05D001799 ORTHO05D001655 1.3e-14 83.6 123 39.8
Lalb_Chr11g0067451 Lupinus albus HOM05D001799 ORTHO05D001655 1.7e-14 83.2 124 37.1
EL10Ac3g05162 Beta vulgaris HOM05D001799 ORTHO05D001655 3.8e-14 82.0 142 38.0
QL09p006902 Quercus lobata HOM05D001799 ORTHO05D001655 1.5e-13 80.1 121 35.5
AL8G29300 Arabidopsis lyrata HOM05D001799 ORTHO05D001655 2.5e-13 79.3 102 41.2
CANSAT21G2156 Cannabis sativa HOM05D001799 ORTHO05D001655 2.5e-13 79.3 123 35.8
Lalb_Chr08g0239541 Lupinus albus HOM05D001799 ORTHO05D001655 2.5e-13 79.3 114 39.5
Ah.07g204490 Amaranthus hybridus HOM05D001799 ORTHO05D001655 4.2e-13 78.6 139 37.4
Ca_16784_v3 Cicer arietinum L. HOM05D001799 ORTHO05D001655 5.5e-13 78.2 117 37.6
Ca_16800_v3 Cicer arietinum L. HOM05D001799 ORTHO05D001655 5.5e-13 78.2 117 37.6
AUR62028091 Chenopodium quinoa HOM05D001799 ORTHO05D001655 7.2e-13 77.8 87 39.1
Dinv29206 Davidia involucrata HOM05D001799 ORTHO05D001655 1.2e-12 77.0 115 36.5
Peaxi162Scf00912g00142 Petunia axillaris HOM05D001799 ORTHO05D001655 2.1e-12 76.3 96 41.7
vmacro06449 Vaccinium macrocarpon HOM05D001799 ORTHO05D001655 2.1e-12 76.3 119 34.5
Gohir.A11G016800 Gossypium hirsutum HOM05D001799 ORTHO05D001655 2.7e-12 75.9 124 33.9
Gohir.D11G016600 Gossypium hirsutum HOM05D001799 ORTHO05D001655 2.7e-12 75.9 124 33.9
Gorai.007G017400 Gossypium raimondii HOM05D001799 ORTHO05D001655 2.7e-12 75.9 124 33.9
arahy.Tifrunner.gnm1.ann1.43FH2R Arachis hypogaea HOM05D001799 ORTHO05D001655 3.6e-12 75.5 89 46.1
EL10Ac3g05163 Beta vulgaris HOM05D001799 ORTHO05D001655 3.6e-12 75.5 172 32.6
MD01G1229200 Malus domestica HOM05D001799 ORTHO05D001655 4.7e-12 75.1 118 37.3
MD07G1300600 Malus domestica HOM05D001799 ORTHO05D001655 4.7e-12 75.1 138 37.0
TPR.G39833 Trifolium pratense HOM05D001799 ORTHO05D001655 4.7e-12 75.1 126 36.5
arahy.Tifrunner.gnm1.ann1.HAI2J2 Arachis hypogaea HOM05D001799 ORTHO05D001655 6.1e-12 74.7 114 36.8
Manes.01G043800 Manihot esculenta HOM05D001799 ORTHO05D001655 6.1e-12 74.7 125 35.2
CSS0016235 Camellia sinensis var. sinensis HOM05D001799 ORTHO05D001655 8.0e-12 74.3 117 36.8
Ca_16785_v3 Cicer arietinum L. HOM05D001799 ORTHO05D001655 8.0e-12 74.3 115 36.5
Ca_16801_v3 Cicer arietinum L. HOM05D001799 ORTHO05D001655 8.0e-12 74.3 115 36.5
Lj3A893T82 Lonicera japonica HOM05D001799 ORTHO05D001655 8.0e-12 74.3 118 38.1
Haze_00305 Corylus avellana HOM05D000001 ORTHO05D001653 1.0e-11 73.9 152 34.2
Oeu061036.1 Olea europaea HOM05D001799 ORTHO05D001655 1.0e-11 73.9 116 38.8
Psat5g071400 Pisum sativum HOM05D001799 ORTHO05D001655 1.0e-11 73.9 123 34.1
COL.COLO4_14379 Corchorus olitorius HOM05D001799 ORTHO05D001655 1.4e-11 73.6 130 33.1
Sc19g0000540 Simmondsia chinensis HOM05D001799 ORTHO05D001655 1.4e-11 73.6 152 31.6
AUR62028090 Chenopodium quinoa HOM05D001799 ORTHO05D001655 1.8e-11 73.2 113 33.6
DCAR_014565 Daucus carota HOM05D001799 ORTHO05D001655 1.8e-11 73.2 138 32.6
QL09p006905 Quercus lobata HOM05D001799 ORTHO05D001655 1.8e-11 73.2 115 34.8
TPR.G33369 Trifolium pratense HOM05D001799 ORTHO05D001655 1.8e-11 73.2 113 33.6
BcaB01g04279 Brassica carinata HOM05D001799 ORTHO05D001655 4.0e-11 72.0 126 33.3
Cfa016149 Carpinus fangiana HOM05D000001 ORTHO05D001655 4.0e-11 72.0 119 33.6
DCAR_010570 Daucus carota HOM05D001799 ORTHO05D001655 4.0e-11 72.0 117 36.8
Medtr3g092930 Medicago truncatula HOM05D001799 ORTHO05D001655 4.0e-11 72.0 122 33.6
Nitab4.5_0006821g0050 Nicotiana tabacum HOM05D001799 ORTHO05D001655 4.0e-11 72.0 140 32.9
MD07G1211900 Malus domestica HOM05D001799 ORTHO05D001655 5.2e-11 71.6 117 39.3
Cfa016150 Carpinus fangiana HOM05D001799 ORTHO05D001655 6.8e-11 71.2 125 35.2
MD07G1300800 Malus domestica HOM05D001799 ORTHO05D001655 6.8e-11 71.2 140 35.0
Nitab4.5_0000021g0110 Nicotiana tabacum HOM05D001799 ORTHO05D001655 8.8e-11 70.9 116 36.2
TAR374G0661 Trochodendron aralioides HOM05D001799 ORTHO05D001655 8.8e-11 70.9 119 37.8
CARHR267350 Cardamine hirsuta HOM05D001799 ORTHO05D001655 1.2e-10 70.5 126 32.5
Thhalv10026379m.g Eutrema salsugineum HOM05D001799 ORTHO05D001655 1.2e-10 70.5 135 34.8
Potri.015G003200 Populus trichocarpa HOM05D001799 ORTHO05D001655 1.5e-10 70.1 148 33.1
Carub.0008s1445 Capsella rubella HOM05D001799 ORTHO05D001655 2.0e-10 69.7 119 33.6
Ciclev10022593m.g Citrus clementina HOM05D001799 ORTHO05D001655 2.0e-10 69.7 118 33.9
Duzib205G0886 Durio zibethinus HOM05D001799 ORTHO05D001655 2.0e-10 69.7 116 34.5
SHI02275 Sapria himalayana HOM05D001799 ORTHO05D001655 2.0e-10 69.7 126 34.1
TAR375G0758 Trochodendron aralioides HOM05D001799 ORTHO05D001655 2.0e-10 69.7 118 33.1
Cc02_g00750 Coffea canephora HOM05D001799 ORTHO05D001655 2.6e-10 69.3 129 34.1
Glyma.04G227500 Glycine max HOM05D001799 ORTHO05D001655 2.6e-10 69.3 130 33.1
Atru.chr12.2449 Acer truncatum HOM05D001799 ORTHO05D001655 3.4e-10 68.9 125 31.2
Atru.chr12.2490 Acer truncatum HOM05D001799 ORTHO05D001655 3.4e-10 68.9 125 31.2
Sp7g25630 Schrenkiella parvula HOM05D001799 ORTHO05D001655 3.4e-10 68.9 129 34.1
A10p11470 Brassica napus HOM05D001799 ORTHO05D001655 4.4e-10 68.6 124 29.8
BraA10t43241Z Brassica rapa HOM05D001799 ORTHO05D001655 4.4e-10 68.6 124 29.8
DCAR_012111 Daucus carota HOM05D001799 ORTHO05D001655 4.4e-10 68.6 135 31.9
GSVIVG01038656001 Vitis vinifera HOM05D001799 ORTHO05D001655 4.4e-10 68.6 127 31.5
Carub.0007s1316 Capsella rubella HOM05D001799 ORTHO05D001655 5.7e-10 68.2 137 34.3
Sed0005863 Sechium edule HOM05D001799 ORTHO05D001655 5.7e-10 68.2 150 30.0
Sopen03g021900 Solanum pennellii HOM05D001799 ORTHO05D001655 5.7e-10 68.2 116 33.6
Thecc.03G209600 Theobroma cacao HOM05D001799 ORTHO05D001655 5.7e-10 68.2 128 32.0
CAN.G303.35 Capsicum annuum HOM05D001799 ORTHO05D001655 9.8e-10 67.4 116 34.5
Glyma.04G227600 Glycine max HOM05D001799 ORTHO05D001655 9.8e-10 67.4 136 33.8
PGSC0003DMG400000581 Solanum tuberosum HOM05D001799 ORTHO05D001655 9.8e-10 67.4 116 33.6
arahy.Tifrunner.gnm1.ann1.A9XWZ4 Arachis hypogaea HOM05D001799 ORTHO05D001655 1.3e-09 67.0 114 36.0
Nn1g09661 Nelumbo nucifera HOM05D001799 ORTHO05D001655 2.2e-09 66.2 150 30.7
Nn8g39146 Nelumbo nucifera HOM05D001799 ORTHO05D001655 2.2e-09 66.2 150 30.7
Rhsim03G0216200 Rhododendron simsii HOM05D001799 ORTHO05D001655 2.2e-09 66.2 118 32.2
Potri.012G006501 Populus trichocarpa HOM05D001799 ORTHO05D001655 2.8e-09 65.9 125 33.6
Solyc03g080170.3 Solanum lycopersicum HOM05D001799 ORTHO05D001655 2.8e-09 65.9 116 32.8
vmacro10165 Vaccinium macrocarpon HOM05D001799 ORTHO05D001655 2.8e-09 65.9 120 34.2
CiPaw.06G040500 Carya illinoinensis HOM05D001799 ORTHO05D001655 3.7e-09 65.5 146 32.2
AL7G25010 Arabidopsis lyrata HOM05D001799 ORTHO05D001655 4.8e-09 65.1 117 35.0
MSTRG.26970 Avicennia marina HOM05D001799 ORTHO05D001655 4.8e-09 65.1 137 32.1
Lj1g0012845 Lotus japonicus HOM05D001799 ORTHO05D001655 4.8e-09 65.1 120 32.5
RcHm_v2.0_Chr1g0382971 Rosa chinensis HOM05D001799 ORTHO05D001655 4.8e-09 65.1 122 30.3
Aa31LG3G9870 Aethionema arabicum HOM05D001799 ORTHO05D001655 6.3e-09 64.7 132 32.6
A01p19050 Brassica napus HOM05D001799 ORTHO05D001655 6.3e-09 64.7 129 35.7
BraA01t01848Z Brassica rapa HOM05D001799 ORTHO05D001655 6.3e-09 64.7 129 35.7
Ca_08756_v3 Cicer arietinum L. HOM05D001799 ORTHO05D001655 6.3e-09 64.7 138 31.2
AL8G29290 Arabidopsis lyrata HOM05D001799 ORTHO05D001655 8.3e-09 64.3 125 31.2
BcaC09g50556 Brassica carinata HOM05D001799 ORTHO05D001655 8.3e-09 64.3 129 35.7
C01p23980 Brassica napus HOM05D001799 ORTHO05D001655 8.3e-09 64.3 129 35.7
Prupe.2G319800 Prunus persica HOM05D001799 ORTHO05D001655 8.3e-09 64.3 67 47.8
THA.LOC104811886 Tarenaya hassleriana HOM05D001799 ORTHO05D001655 8.3e-09 64.3 154 28.6
Atru.chr1.2423 Acer truncatum HOM05D001799 ORTHO05D001655 1.1e-08 63.9 105 36.2
Medtr3g092960 Medicago truncatula HOM05D001799 ORTHO05D001655 1.1e-08 63.9 120 31.7
A03p57450 Brassica napus HOM05D001799 ORTHO05D001655 1.4e-08 63.5 119 35.3
BolC1t02348H Brassica oleracea HOM05D001799 ORTHO05D001655 1.4e-08 63.5 129 35.7
BraA03t14813Z Brassica rapa HOM05D001799 ORTHO05D001655 1.4e-08 63.5 119 35.3
SalBow4G2285 Salvia bowleyana HOM05D001799 ORTHO05D001655 1.4e-08 63.5 130 34.6
SalBow4G2945 Salvia bowleyana HOM05D001799 ORTHO05D001655 1.4e-08 63.5 130 34.6
AT5G54148 Arabidopsis thaliana HOM05D001799 ORTHO05D001655 1.8e-08 63.2 107 33.6
BcaC04g20368 Brassica carinata HOM05D001799 ORTHO05D001655 2.4e-08 62.8 112 30.4
BcaC04g20370 Brassica carinata HOM05D001799 ORTHO05D001655 2.4e-08 62.8 112 30.4
C09p44430 Brassica napus HOM05D001799 ORTHO05D001655 2.4e-08 62.8 112 30.4
BolC9t57311H Brassica oleracea HOM05D001799 ORTHO05D001655 2.4e-08 62.8 112 30.4
SGA_v2.0_scaffold18G08472 Striga asiatica HOM05D001799 ORTHO05D001655 2.4e-08 62.8 115 32.2
AT4G27660 Arabidopsis thaliana HOM05D001799 ORTHO05D001655 3.1e-08 62.4 117 35.0
AT5G54150 Arabidopsis thaliana HOM05D001799 ORTHO05D001655 3.1e-08 62.4 115 33.0
C07p55660 Brassica napus HOM05D001799 ORTHO05D001655 3.1e-08 62.4 138 34.1
BolC7t46046H Brassica oleracea HOM05D001799 ORTHO05D001655 3.1e-08 62.4 138 34.1
Sabra15G0002100 Salix brachista HOM05D001799 ORTHO05D001655 3.1e-08 62.4 125 30.4
Duzib138G0086 Durio zibethinus HOM05D001799 ORTHO05D001655 4.1e-08 62.0 69 40.6
Migut.F00143 Erythranthe guttata HOM05D001799 ORTHO05D001655 4.1e-08 62.0 103 32.0
Rhsim09G0210200 Rhododendron simsii HOM05D001799 ORTHO05D001655 4.1e-08 62.0 128 32.8
Lalb_Chr23g0271961 Lupinus albus HOM05D001799 ORTHO05D001655 5.4e-08 61.6 58 53.4
BcaNung01644 Brassica carinata HOM05D001799 ORTHO05D001655 7.0e-08 61.2 150 32.7
Lj1g0015523 Lotus japonicus HOM05D001799 ORTHO05D001655 1.6e-07 60.1 95 33.7
Sabra12G0008400 Salix brachista HOM05D001799 ORTHO05D001655 1.6e-07 60.1 124 30.6
FAN10G2261 Fragaria x ananassa HOM05D001799 ORTHO05D001655 2.0e-07 59.7 116 30.2
FAN10G3955 Fragaria x ananassa HOM05D001799 ORTHO05D001655 2.0e-07 59.7 116 30.2
SalBow4G1659 Salvia bowleyana HOM05D001799 ORTHO05D001655 2.0e-07 59.7 95 31.6
Oeu039650.1 Olea europaea HOM05D001799 ORTHO05D001655 2.7e-07 59.3 95 30.5
Aqoxy1G01801 Aquilegia oxysepala HOM05D001799 ORTHO05D001655 3.5e-07 58.9 108 30.6
Lsat_1_v5_gn_0_9841 Lactuca sativa HOM05D001799 ORTHO05D001655 5.9e-07 58.2 122 31.1
Sp6g16200 Schrenkiella parvula HOM05D001799 ORTHO05D001655 5.9e-07 58.2 56 46.4
Lsat_1_v5_gn_5_180101 Lactuca sativa HOM05D001799 ORTHO05D001655 1.0e-06 57.4 101 32.7
CSS0002635 Camellia sinensis var. sinensis HOM05D001799 ORTHO05D001655 1.3e-06 57.0 95 32.6
FAN03G0617 Fragaria x ananassa HOM05D001799 ORTHO05D001655 1.3e-06 57.0 116 28.4
Prupe.8G213400 Prunus persica HOM05D001799 ORTHO05D001655 1.3e-06 57.0 102 31.4
Atru.chr12.2450 Acer truncatum HOM05D001799 ORTHO05D001655 1.7e-06 56.6 127 29.1
MBI10_g26045_MAGBIO Magnolia biondii HOM05D001799 ORTHO05D001655 1.7e-06 56.6 107 30.8
Psat3g052240 Pisum sativum HOM05D001799 ORTHO05D001655 1.7e-06 56.6 103 31.1
FAN01G2762 Fragaria x ananassa HOM05D001799 ORTHO05D001655 2.3e-06 56.2 116 29.3
Glyma.03G168500 Glycine max HOM05D001799 ORTHO05D001655 2.3e-06 56.2 109 31.2
Gohir.A12G246150 Gossypium hirsutum HOM05D001799 ORTHO05D001655 2.3e-06 56.2 104 30.8
TWI18G0889 Tripterygium wilfordii HOM05D001799 ORTHO05D001655 2.3e-06 56.2 100 29.0
Actinidia08702 Actinidia chinensis HOM05D001799 ORTHO05D001655 2.9e-06 55.8 117 30.8
MSTRG.18361 Avicennia marina HOM05D001799 ORTHO05D001655 2.9e-06 55.8 131 29.0
Phvul.009G044300 Phaseolus vulgaris HOM05D001799 ORTHO05D001655 2.9e-06 55.8 114 32.5
ECA232G3612 Erigeron canadensis HOM05D000001 ORTHO05D001655 3.8e-06 55.5 122 30.3
unitig_0.g2441 Utricularia gibba HOM05D001799 ORTHO05D001655 3.8e-06 55.5 125 28.8
Aqoxy1G01803 Aquilegia oxysepala HOM05D001799 ORTHO05D001655 5.0e-06 55.1 95 32.6
BcaC06g32668 Brassica carinata HOM05D001799 ORTHO05D001655 5.0e-06 55.1 140 30.7
Migut.D00488 Erythranthe guttata HOM05D001799 ORTHO05D001655 5.0e-06 55.1 120 26.7
Glyma.06G137600 Glycine max HOM05D001799 ORTHO05D001655 5.0e-06 55.1 77 41.6
Hma1.2p1_2051F.1_g312570 Hydrangea macrophylla HOM05D001799 ORTHO05D001655 5.0e-06 55.1 95 33.7
Oeu026802.3 Olea europaea HOM05D001799 ORTHO05D001655 5.0e-06 55.1 99 30.3
VMungo1309G1866 Vigna mungo HOM05D001799 ORTHO05D001655 5.0e-06 55.1 130 30.0
SGA_v2.0_scaffold44G16852 Striga asiatica HOM05D001799 ORTHO05D001655 6.6e-06 54.7 115 29.6
FvH4_7g33000 Fragaria vesca HOM05D001799 ORTHO05D001655 8.6e-06 54.3 133 27.1


User provided reference genes

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