Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 1.7e-81 305.8 142 100.0
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.0e-54 216.9 123 78.0
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 2.8e-52 208.8 122 77.0
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.4e-51 206.5 122 73.0
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 1.4e-46 189.9 122 65.6
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.4e-43 179.1 120 65.0
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 3.1e-43 178.7 127 63.8
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 5.3e-43 177.9 127 62.2
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 1.2e-42 176.8 127 63.8
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.2e-42 176.8 120 64.2
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 1.5e-42 176.4 127 62.2
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 1.5e-42 176.4 131 58.8
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 2.0e-42 176.0 127 60.6
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 1.0e-41 173.7 127 59.8
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 1.0e-41 173.7 127 59.8
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 1.3e-41 173.3 125 65.6
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 1.7e-41 172.9 127 60.6
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 1.7e-41 172.9 127 60.6
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 2.9e-41 172.2 124 63.7
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 2.9e-41 172.2 124 63.7
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 3.8e-41 171.8 127 61.4
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 3.8e-41 171.8 128 60.2
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.0e-41 171.4 122 65.6
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 6.5e-41 171.0 127 59.8
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 6.5e-41 171.0 120 65.0
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 6.5e-41 171.0 124 62.1
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 8.5e-41 170.6 128 58.6
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.4e-40 169.9 121 63.6
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 1.4e-40 169.9 125 59.2
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 2.5e-40 169.1 127 58.3
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 2.5e-40 169.1 125 61.6
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 3.2e-40 168.7 125 64.0
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 3.2e-40 168.7 123 63.4
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.2e-40 168.7 121 63.6
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 4.2e-40 168.3 128 58.6
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 5.5e-40 167.9 128 60.2
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 7.2e-40 167.5 132 60.6
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 9.4e-40 167.2 126 61.1
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 9.4e-40 167.2 121 62.8
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 1.2e-39 166.8 128 60.2
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 1.2e-39 166.8 128 61.7
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 1.2e-39 166.8 131 59.5
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 1.2e-39 166.8 125 62.4
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 1.2e-39 166.8 128 61.7
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 1.2e-39 166.8 128 61.7
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 1.2e-39 166.8 127 59.1
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 1.6e-39 166.4 128 60.2
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.6e-39 166.4 121 62.0
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 2.1e-39 166.0 123 62.6
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 2.1e-39 166.0 128 61.7
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 2.7e-39 165.6 128 56.2
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 2.7e-39 165.6 128 60.2
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 3.6e-39 165.2 125 58.4
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 4.7e-39 164.9 120 60.8
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 6.1e-39 164.5 128 58.6
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 7.9e-39 164.1 125 61.6
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 7.9e-39 164.1 128 58.6
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 1.0e-38 163.7 124 63.7
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 1.0e-38 163.7 126 58.7
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.0e-38 163.7 128 61.7
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 1.0e-38 163.7 120 61.7
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 1.4e-38 163.3 124 58.9
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.4e-38 163.3 122 63.9
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 1.8e-38 162.9 128 57.0
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 2.3e-38 162.5 124 62.1
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 2.3e-38 162.5 128 59.4
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 2.3e-38 162.5 120 61.7
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 3.0e-38 162.2 127 57.5
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 3.0e-38 162.2 126 57.1
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 3.0e-38 162.2 128 60.2
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 3.9e-38 161.8 128 57.8
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 3.9e-38 161.8 128 59.4
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 5.2e-38 161.4 129 58.9
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 6.7e-38 161.0 121 62.0
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 6.7e-38 161.0 124 60.5
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 6.7e-38 161.0 121 61.2
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 8.8e-38 160.6 126 58.7
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 8.8e-38 160.6 128 57.8
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 8.8e-38 160.6 128 58.6
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 8.8e-38 160.6 116 63.8
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 8.8e-38 160.6 125 56.0
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 8.8e-38 160.6 128 59.4
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 8.8e-38 160.6 128 58.6
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 8.8e-38 160.6 123 58.5
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 8.8e-38 160.6 125 58.4
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 8.8e-38 160.6 116 63.8
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 1.1e-37 160.2 124 58.1
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 1.1e-37 160.2 125 60.0
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 1.5e-37 159.8 127 56.7
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 1.5e-37 159.8 125 56.0
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 2.0e-37 159.5 123 58.5
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 2.6e-37 159.1 123 62.6
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 2.6e-37 159.1 125 60.0
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 2.6e-37 159.1 125 55.2
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.6e-37 159.1 125 55.2
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 2.6e-37 159.1 127 55.9
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 2.6e-37 159.1 126 57.1
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 4.4e-37 158.3 127 55.1
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 5.7e-37 157.9 129 57.4
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 7.4e-37 157.5 126 57.9
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 7.4e-37 157.5 122 59.0
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 7.4e-37 157.5 125 55.2
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 7.4e-37 157.5 118 61.0
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 9.7e-37 157.1 119 61.3
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 9.7e-37 157.1 121 60.3
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 9.7e-37 157.1 125 55.2
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 9.7e-37 157.1 122 59.8
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 9.7e-37 157.1 128 57.8
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.3e-36 156.8 125 58.4
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 1.3e-36 156.8 125 54.4
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 1.7e-36 156.4 128 56.2
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 1.7e-36 156.4 122 60.7
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 2.2e-36 156.0 121 60.3
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 2.2e-36 156.0 116 61.2
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 2.2e-36 156.0 125 58.4
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 2.2e-36 156.0 121 57.0
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 4.8e-36 154.8 124 59.7
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 8.2e-36 154.1 125 56.0
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.8e-35 152.9 124 54.8
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 2.4e-35 152.5 167 47.9
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.4e-35 152.5 124 56.5
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 7.0e-35 151.0 125 53.6
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 1.2e-34 150.2 123 58.5
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 1.2e-34 150.2 116 62.1
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 3.5e-34 148.7 128 55.5
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 4.5e-34 148.3 121 53.7
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 2.9e-33 145.6 126 52.4
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.1e-32 143.7 117 58.1
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 1.9e-32 142.9 122 53.3
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 2.5e-32 142.5 109 59.6
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 3.2e-32 142.1 126 52.4
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 3.2e-32 142.1 112 63.4
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 9.4e-32 140.6 120 52.5
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 8.0e-31 137.5 125 54.4
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 4.0e-30 135.2 101 61.4
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 1.7e-28 129.8 137 44.5
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 8.2e-28 127.5 125 48.8
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.2e-25 119.4 125 49.6
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.2e-23 113.6 87 64.4
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 2.1e-23 112.8 125 50.4
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 2.3e-22 109.4 89 59.6
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 1.3e-20 103.6 86 58.1
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.3e-20 103.6 66 69.7
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 2.8e-20 102.4 86 57.0
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 4.2e-16 88.6 60 61.7
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 1.6e-15 86.7 74 60.8
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.0e-14 84.0 111 41.4
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 8.9e-14 80.9 63 65.1
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.8e-11 73.2 77 48.1
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 3.1e-11 72.4 78 48.7


User provided reference genes

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