Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 3.4e-82 308.1 143 100.0
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 2.0e-66 255.8 142 78.2
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 9.4e-64 246.9 143 76.2
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.3e-62 242.3 143 74.1
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 8.8e-54 213.8 138 65.9
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 1.5e-53 213.0 135 68.1
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 5.7e-53 211.1 132 67.4
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 7.5e-53 210.7 132 69.7
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 2.8e-52 208.8 133 66.2
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 4.8e-52 208.0 135 65.9
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 6.3e-52 207.6 133 64.7
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 8.2e-52 207.2 132 69.7
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 8.2e-52 207.2 132 69.7
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 1.4e-51 206.5 132 69.7
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 2.4e-51 205.7 132 65.9
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 3.1e-51 205.3 135 65.2
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 4.1e-51 204.9 133 66.2
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 4.1e-51 204.9 133 67.7
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 4.1e-51 204.9 132 65.9
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 7.0e-51 204.1 129 66.7
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 7.0e-51 204.1 132 68.2
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 7.0e-51 204.1 133 67.7
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.0e-51 204.1 135 67.4
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 9.1e-51 203.8 130 66.9
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 9.1e-51 203.8 132 65.2
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 9.1e-51 203.8 132 63.6
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 1.6e-50 203.0 135 64.4
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 1.6e-50 203.0 130 66.2
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 2.0e-50 202.6 139 61.9
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 2.7e-50 202.2 135 66.7
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 3.5e-50 201.8 129 68.2
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 4.5e-50 201.4 132 68.2
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 7.7e-50 200.7 131 64.9
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 7.7e-50 200.7 131 67.9
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 1.0e-49 200.3 133 64.7
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 1.0e-49 200.3 132 64.4
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 1.3e-49 199.9 128 68.8
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 1.3e-49 199.9 135 65.2
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.2e-49 199.1 135 65.9
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 2.2e-49 199.1 132 65.2
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 2.9e-49 198.7 132 64.4
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 2.9e-49 198.7 129 68.2
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 3.8e-49 198.4 136 64.0
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.0e-49 198.0 133 65.4
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 5.0e-49 198.0 139 60.4
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 5.0e-49 198.0 133 64.7
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 6.5e-49 197.6 133 63.2
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 8.5e-49 197.2 135 62.2
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 1.1e-48 196.8 132 63.6
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 1.5e-48 196.4 128 65.6
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 1.5e-48 196.4 133 62.4
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 1.9e-48 196.1 135 61.5
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 1.9e-48 196.1 130 63.8
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 1.9e-48 196.1 135 60.7
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 2.5e-48 195.7 134 64.2
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 3.2e-48 195.3 136 63.2
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 3.2e-48 195.3 136 63.2
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 3.2e-48 195.3 135 61.5
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 4.2e-48 194.9 133 62.4
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 4.2e-48 194.9 132 63.6
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.5e-48 194.5 119 70.6
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 5.5e-48 194.5 133 62.4
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 7.2e-48 194.1 135 60.7
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 9.4e-48 193.7 135 61.5
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.2e-47 193.4 133 64.7
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.2e-47 193.4 135 60.7
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 1.2e-47 193.4 132 59.8
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 1.6e-47 193.0 136 61.8
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 2.7e-47 192.2 132 63.6
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 2.7e-47 192.2 132 62.1
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 2.7e-47 192.2 133 60.9
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 3.6e-47 191.8 135 62.2
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 3.6e-47 191.8 132 62.1
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 3.6e-47 191.8 129 63.6
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 4.7e-47 191.4 134 62.7
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 4.7e-47 191.4 134 62.7
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 6.1e-47 191.0 135 62.2
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 6.1e-47 191.0 131 64.9
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 8.0e-47 190.7 122 65.6
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 8.0e-47 190.7 132 61.4
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 8.0e-47 190.7 135 60.7
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 8.0e-47 190.7 133 60.9
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 1.0e-46 190.3 126 63.5
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 1.0e-46 190.3 133 61.7
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 1.4e-46 189.9 132 61.4
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 1.4e-46 189.9 133 60.9
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.8e-46 189.5 133 59.4
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 1.8e-46 189.5 129 62.0
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 1.8e-46 189.5 135 58.5
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.3e-46 189.1 135 60.7
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 3.0e-46 188.7 134 60.4
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.0e-46 188.7 135 60.0
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 3.0e-46 188.7 132 61.4
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 3.0e-46 188.7 135 59.3
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 4.0e-46 188.3 132 59.8
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 4.0e-46 188.3 134 58.2
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 4.0e-46 188.3 134 61.2
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 6.8e-46 187.6 134 60.4
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 6.8e-46 187.6 140 59.3
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 6.8e-46 187.6 129 63.6
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 8.8e-46 187.2 133 60.9
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.5e-45 186.4 119 68.9
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 2.0e-45 186.0 131 59.5
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 2.6e-45 185.7 123 65.9
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 2.6e-45 185.7 129 61.2
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 3.4e-45 185.3 129 62.8
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 3.4e-45 185.3 122 61.5
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 4.4e-45 184.9 132 59.8
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 4.4e-45 184.9 135 58.5
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 7.5e-45 184.1 134 59.7
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 7.5e-45 184.1 133 63.2
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 7.5e-45 184.1 120 65.0
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 7.5e-45 184.1 129 61.2
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 9.8e-45 183.7 120 66.7
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 1.7e-44 183.0 132 60.6
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 2.8e-44 182.2 133 59.4
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 3.7e-44 181.8 131 61.8
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 6.3e-44 181.0 171 51.5
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 1.4e-43 179.9 123 63.4
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 1.8e-43 179.5 134 58.2
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 2.4e-43 179.1 135 57.0
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.0e-42 176.0 130 60.0
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 3.5e-42 175.3 134 57.5
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.0e-41 173.7 132 58.3
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 5.0e-41 171.4 112 67.0
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 1.9e-40 169.5 127 55.9
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 2.5e-40 169.1 119 60.5
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 2.8e-39 165.6 124 55.6
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.8e-39 165.6 130 58.5
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 4.7e-39 164.9 111 63.1
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.4e-38 163.3 118 58.5
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.0e-38 162.2 135 59.3
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.2e-38 161.4 135 54.1
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 5.2e-38 161.4 130 56.9
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 6.8e-38 161.0 131 52.7
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 2.0e-37 159.5 104 64.4
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 5.7e-37 157.9 119 56.3
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 7.8e-34 147.5 99 68.7
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 1.0e-33 147.1 141 48.9
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 1.2e-29 133.7 134 51.5
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 3.4e-29 132.1 73 79.5
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 2.9e-28 129.0 85 65.9
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 1.1e-27 127.1 96 61.5
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 4.6e-26 121.7 100 54.0
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 7.3e-24 114.4 72 68.1
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 8.3e-20 100.9 107 48.6
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.8e-18 94.4 78 56.4
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 7.8e-18 94.4 73 60.3
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.9e-17 92.0 63 66.7
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 9.5e-16 87.4 79 51.9


User provided reference genes

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