Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 4.7e-71 271.2 144 100.0
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 5.6e-56 221.1 142 80.3
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 9.2e-51 203.8 145 66.9
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 6.0e-50 201.1 148 76.4
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 1.9e-40 169.5 97 78.4
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 3.3e-40 168.7 92 83.7
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 4.7e-39 164.9 133 59.4
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 2.3e-38 162.5 135 62.2
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 3.1e-38 162.2 135 61.5
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 6.8e-38 161.0 88 81.8
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 8.9e-38 160.6 81 87.7
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 8.9e-38 160.6 81 87.7
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 8.9e-38 160.6 81 87.7
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 8.9e-38 160.6 81 87.7
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 1.2e-37 160.2 92 81.5
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 2.0e-37 159.5 135 58.5
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 4.4e-37 158.3 132 59.1
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 4.4e-37 158.3 98 77.6
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 4.4e-37 158.3 90 80.0
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 4.4e-37 158.3 117 65.8
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 7.5e-37 157.5 89 77.5
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 9.9e-37 157.1 146 56.2
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.3e-36 156.8 126 58.7
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 1.7e-36 156.4 100 74.0
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 2.2e-36 156.0 131 58.8
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 3.7e-36 155.2 93 76.3
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 3.7e-36 155.2 93 76.3
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 3.7e-36 155.2 93 76.3
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 3.7e-36 155.2 79 87.3
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 4.9e-36 154.8 97 72.2
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 4.9e-36 154.8 134 58.2
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 4.9e-36 154.8 98 72.4
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 4.9e-36 154.8 120 64.2
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 6.4e-36 154.5 78 84.6
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 6.4e-36 154.5 78 84.6
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 6.4e-36 154.5 126 57.9
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 6.4e-36 154.5 103 68.0
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 6.4e-36 154.5 129 65.9
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 8.3e-36 154.1 103 70.9
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 1.1e-35 153.7 128 70.3
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 1.1e-35 153.7 121 61.2
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 1.9e-35 152.9 102 70.6
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 1.9e-35 152.9 102 69.6
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 1.9e-35 152.9 102 70.6
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 1.9e-35 152.9 102 70.6
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 2.4e-35 152.5 134 58.2
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 3.2e-35 152.1 97 72.2
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 3.2e-35 152.1 78 85.9
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 3.2e-35 152.1 94 73.4
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 4.1e-35 151.8 132 65.9
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 4.1e-35 151.8 131 58.8
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 5.4e-35 151.4 116 62.1
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 7.1e-35 151.0 97 69.1
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 9.2e-35 150.6 81 80.2
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 9.2e-35 150.6 132 57.6
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 9.2e-35 150.6 81 81.5
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 9.2e-35 150.6 81 81.5
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.2e-34 150.2 81 80.2
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.2e-34 150.2 81 80.2
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 1.2e-34 150.2 87 79.3
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.2e-34 150.2 82 81.7
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 1.2e-34 150.2 92 72.8
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 1.6e-34 149.8 134 57.5
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 1.6e-34 149.8 79 83.5
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 2.1e-34 149.4 103 69.9
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.1e-34 149.4 126 65.9
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 2.1e-34 149.4 96 71.9
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 2.1e-34 149.4 78 83.3
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 2.1e-34 149.4 156 55.8
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 2.1e-34 149.4 134 59.7
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 2.7e-34 149.1 133 63.2
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 3.5e-34 148.7 79 82.3
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 4.6e-34 148.3 93 73.1
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 6.0e-34 147.9 123 71.5
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 7.8e-34 147.5 126 64.3
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 7.8e-34 147.5 130 60.0
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 7.8e-34 147.5 79 81.0
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 1.0e-33 147.1 87 75.9
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 1.0e-33 147.1 76 82.9
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 1.3e-33 146.7 79 81.0
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 1.7e-33 146.4 79 79.7
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 2.3e-33 146.0 81 79.0
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 3.0e-33 145.6 103 66.0
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 3.9e-33 145.2 79 78.5
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 5.1e-33 144.8 79 78.5
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 6.6e-33 144.4 89 73.0
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 6.6e-33 144.4 81 77.8
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 8.6e-33 144.1 152 54.6
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 8.6e-33 144.1 76 81.6
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 8.6e-33 144.1 102 67.6
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 8.6e-33 144.1 79 79.7
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 1.1e-32 143.7 129 68.2
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 1.1e-32 143.7 78 75.6
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 1.1e-32 143.7 129 65.1
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 1.1e-32 143.7 128 58.6
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.1e-32 143.7 92 69.6
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 1.5e-32 143.3 101 66.3
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 1.9e-32 142.9 75 81.3
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 1.9e-32 142.9 74 82.4
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 2.5e-32 142.5 144 62.5
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 3.3e-32 142.1 90 70.0
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 3.3e-32 142.1 79 75.9
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 9.5e-32 140.6 73 78.1
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 1.2e-31 140.2 75 80.0
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 1.2e-31 140.2 74 79.7
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 1.2e-31 140.2 78 75.6
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 3.6e-31 138.7 99 65.7
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 4.7e-31 138.3 78 74.4
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 6.2e-31 137.9 88 69.3
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 6.8e-30 134.4 78 75.6
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 1.9e-27 126.3 100 63.0
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 1.9e-27 126.3 97 60.8
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 2.4e-27 125.9 90 65.6
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 2.1e-26 122.9 97 61.9
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 7.8e-26 120.9 133 51.1
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 3.0e-25 119.0 100 57.0
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 6.6e-25 117.9 68 76.5
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 3.6e-23 112.1 112 54.5
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 1.1e-22 110.5 54 83.3
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 1.4e-22 110.2 54 81.5
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.8e-22 109.8 58 79.3
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 6.9e-22 107.8 53 81.1
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 9.0e-22 107.5 75 68.0
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.0e-21 106.3 105 50.5
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 5.8e-21 104.8 51 80.4
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 5.8e-21 104.8 92 56.5
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 6.4e-20 101.3 105 53.3
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 1.2e-18 97.1 86 55.8
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 1.6e-18 96.7 91 48.4
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 1.0e-17 94.0 82 50.0
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 3.0e-17 92.4 80 51.2
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 1.6e-15 86.7 60 65.0
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 1.1e-14 84.0 78 56.4
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 5.3e-14 81.6 43 79.1
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 3.4e-13 79.0 82 46.3
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 1.4e-11 73.6 71 56.3
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 1.9e-11 73.2 91 39.6
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 5.4e-11 71.6 79 54.4
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 1.9e-08 63.2 41 63.4
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 9.6e-08 60.8 49 55.1
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 2.4e-06 56.2 45 53.3
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 5.3e-06 55.1 44 54.5


User provided reference genes

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