Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 0.0e+00 1939.5 1171 100.0
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 0.0e+00 1187.9 1204 67.0
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 0.0e+00 1130.2 1248 63.9
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 1.9e-303 1046.2 1201 56.2
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 2.0e-300 1036.2 1200 56.2
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 4.2e-154 550.1 1204 45.7
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 5.6e-146 523.1 1064 47.4
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 1.2e-116 425.6 1268 41.0
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 1.9e-114 418.3 1246 42.4
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 3.5e-108 397.5 1265 40.1
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 2.5e-106 391.3 1261 32.8
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 2.5e-106 391.3 1319 39.0
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 2.8e-105 387.9 1262 37.4
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 4.8e-105 387.1 1273 36.3
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 3.1e-104 384.4 1257 39.7
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 1.5e-103 382.1 1284 41.2
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 4.5e-103 380.6 1110 39.5
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 2.2e-102 378.3 1284 39.1
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 8.4e-102 376.3 1041 39.8
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.1e-101 375.9 1273 36.9
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.4e-101 375.6 1044 38.3
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 3.2e-101 374.4 1259 39.2
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 5.4e-101 373.6 1044 36.6
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 3.5e-100 370.9 1348 31.8
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 7.9e-100 369.8 1256 35.7
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 8.7e-99 366.3 1268 40.5
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 3.3e-98 364.4 1263 40.7
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 1.6e-97 362.1 1257 35.6
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 1.1e-96 359.4 1292 38.6
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 5.3e-96 357.1 1093 43.3
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 2.2e-94 351.7 1283 39.8
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 3.8e-94 350.9 1269 37.9
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 2.5e-93 348.2 1262 36.4
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 1.0e-91 342.8 1268 38.1
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 5.1e-91 340.5 1063 38.1
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 8.7e-91 339.7 1259 35.7
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.6e-89 335.5 1264 37.6
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.6e-89 335.5 1265 36.8
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 3.7e-89 334.3 1249 35.1
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.8e-88 332.0 1269 37.4
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 2.4e-88 331.6 1260 37.9
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 4.5e-87 327.4 1295 34.9
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.7e-86 325.5 1310 30.4
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 3.8e-86 324.3 1265 36.8
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 2.5e-85 321.6 1068 33.0
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 4.2e-85 320.9 1257 36.4
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 1.6e-84 318.9 1114 32.2
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.1e-84 318.5 1225 37.2
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 2.1e-84 318.5 1279 36.4
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 1.8e-83 315.5 815 36.0
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 5.1e-83 313.9 1111 35.1
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.5e-82 312.4 1257 36.5
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 3.3e-82 311.2 1036 39.5
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.6e-81 308.9 1227 36.8
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 6.3e-81 307.0 1262 35.5
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 8.2e-81 306.6 1264 36.3
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 2.0e-79 302.0 1235 35.1
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 4.5e-79 300.8 1224 31.5
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 5.9e-79 300.4 1256 35.6
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 5.9e-79 300.4 577 40.4
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.3e-78 299.3 1140 35.8
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.4e-77 295.8 1257 36.1
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 1.9e-77 295.4 1222 35.4
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 5.5e-77 293.9 1253 35.5
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 7.9e-76 290.0 826 34.4
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 7.9e-76 290.0 1130 30.9
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 3.7e-73 281.2 1257 32.8
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 1.4e-72 279.3 1352 29.2
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.4e-72 278.5 475 40.8
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 5.3e-72 277.3 1247 34.3
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 9.1e-72 276.6 1261 34.7
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 2.0e-71 275.4 1254 33.4
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 3.8e-70 271.2 1351 34.7
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 5.0e-70 270.8 1253 32.2
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 9.4e-69 266.5 1251 36.9
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 4.7e-68 264.2 794 32.2
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 3.9e-67 261.2 1282 30.0
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 3.7e-65 254.6 1280 29.7
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 8.2e-65 253.4 732 32.8
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 1.8e-64 252.3 482 38.2
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 5.9e-63 247.3 1276 28.6
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 5.0e-62 244.2 1362 35.2
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 2.5e-61 241.9 1289 28.9
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 2.5e-61 241.9 1088 30.4
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 4.2e-61 241.1 598 35.1
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 1.6e-60 239.2 1249 29.7
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 2.1e-60 238.8 1083 30.6
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 3.6e-60 238.0 844 31.8
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 3.6e-60 238.0 1007 33.5
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 2.3e-59 235.3 643 33.1
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 3.9e-59 234.6 803 31.0
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.0e-58 232.3 798 30.7
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 3.3e-58 231.5 810 30.9
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 7.4e-58 230.3 754 32.8
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 2.2e-57 228.8 598 34.4
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 8.2e-57 226.9 1068 37.6
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 1.1e-56 226.5 1255 33.3
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.8e-56 225.7 1275 30.9
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 4.1e-56 224.6 1054 30.7
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 4.5e-55 221.1 1267 34.1
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 5.9e-55 220.7 1323 31.8
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 2.2e-54 218.8 1295 33.1
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 8.5e-54 216.9 556 34.5
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.6e-52 212.6 744 30.8
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 2.7e-52 211.8 769 32.0
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 3.6e-52 211.5 777 31.9
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 6.1e-52 210.7 1059 36.4
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 6.1e-52 210.7 814 28.9
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 8.0e-52 210.3 742 30.6
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 1.0e-51 209.9 777 31.5
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 1.4e-51 209.5 1293 34.4
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 3.0e-51 208.4 622 34.1
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 3.0e-51 208.4 769 32.1
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 4.0e-51 208.0 769 31.9
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 4.4e-50 204.5 1014 36.9
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 2.2e-49 202.2 1266 34.2
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 3.1e-48 198.4 1355 33.8
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 7.0e-48 197.2 651 31.3
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 1.2e-47 196.4 1308 29.7
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 1.2e-47 196.4 637 31.7
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 2.0e-47 195.7 1089 37.2
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 3.4e-42 178.3 769 27.8
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 4.9e-41 174.5 1312 26.6
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 4.9e-41 174.5 910 26.7
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 3.5e-39 168.3 787 27.6
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 7.7e-39 167.2 467 33.0
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 3.8e-38 164.9 1213 35.4
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 3.8e-38 164.9 1213 35.4
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.9e-37 162.5 637 31.6
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 5.5e-37 161.0 1252 30.5
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 3.0e-35 155.2 1386 31.3
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 6.8e-35 154.1 1361 31.0
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 1.2e-34 153.3 1344 26.9
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 4.4e-34 151.4 1117 35.3
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 1.3e-33 149.8 924 38.0
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 5.4e-32 144.4 823 27.3
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 7.0e-32 144.1 730 27.3
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 1.6e-28 132.9 1235 30.1
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 3.6e-28 131.7 615 27.2
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 5.2e-27 127.9 701 26.2
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 5.2e-27 127.9 666 28.2
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 6.8e-27 127.5 333 31.2
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 8.9e-27 127.1 671 26.1
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 2.0e-26 125.9 555 28.8
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.4e-24 119.8 617 26.9
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.4e-24 119.8 611 26.7
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 1.0e-22 113.6 939 31.6
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 4.7e-20 104.8 518 28.2
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 1.2e-18 100.1 560 26.2
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 3.7e-17 95.1 606 26.7
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 1.2e-15 90.1 373 28.7
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 7.8e-15 87.4 503 26.0
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 6.6e-14 84.3 1167 27.5
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 8.6e-14 84.0 291 34.0
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 7.3e-13 80.9 1147 24.7
vmacro11466 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 5.8e-10 71.2 328 32.9
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 3.7e-09 68.6 524 25.6
SHI02387 Sapria himalayana HOM05D003962 ORTHO05D004714 6.0e-07 61.2 166 38.6


User provided reference genes

Program Settings