Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g069690 Amaranthus hybridus HOM05D003548 ORTHO05D004066 4.2e-190 668.7 604 100.0
AUR62031460 Chenopodium quinoa HOM05D003548 ORTHO05D004066 2.8e-93 347.1 618 74.1
EL10Ac3g05370 Beta vulgaris HOM05D003548 ORTHO05D004066 1.0e-87 328.6 615 71.1
AUR62021071 Chenopodium quinoa HOM05D003548 ORTHO05D004066 3.3e-86 323.6 616 72.9
Sc13g0009440 Simmondsia chinensis HOM05D003548 ORTHO05D004066 1.7e-29 135.2 239 43.5
Aqoxy5G04044 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 2.1e-27 128.3 278 39.2
Phvul.002G294600 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 2.3e-26 124.8 284 38.0
Cc08_g15520 Coffea canephora HOM05D003548 ORTHO05D004066 1.1e-25 122.5 288 35.4
GSVIVG01028755001 Vitis vinifera HOM05D003548 ORTHO05D004066 3.3e-25 120.9 265 36.6
CANSAT21G0595 Cannabis sativa HOM05D003548 ORTHO05D004066 6.2e-24 116.7 288 35.8
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 5.2e-23 113.6 289 35.6
Dinv28355 Davidia involucrata HOM05D003548 ORTHO05D004066 4.4e-22 110.5 288 33.3
Oeu050928.1 Olea europaea HOM05D003548 ORTHO05D004066 4.4e-22 110.5 276 34.1
Oeu050927.1 Olea europaea HOM05D003548 ORTHO05D004066 1.7e-21 108.6 275 33.1
Cc02_g02080 Coffea canephora HOM05D003548 ORTHO05D004066 6.4e-21 106.7 277 33.2
VMungo0251G1700 Vigna mungo HOM05D003548 ORTHO05D004066 1.4e-20 105.5 284 34.5
Glyma.08G019800 Glycine max HOM05D003548 ORTHO05D004066 2.4e-20 104.8 285 34.4
Actinidia08610 Actinidia chinensis HOM05D003548 ORTHO05D004066 3.2e-20 104.4 268 32.5
Medtr8g099105 Medicago truncatula HOM05D003548 ORTHO05D004066 4.2e-20 104.0 288 35.8
Oeu003337.1 Olea europaea HOM05D003548 ORTHO05D004066 4.2e-20 104.0 282 33.7
Migut.F01061 Erythranthe guttata HOM05D003548 ORTHO05D004066 5.4e-20 103.6 231 37.2
Glyma.01G223400 Glycine max HOM05D003548 ORTHO05D004066 7.1e-20 103.2 284 36.3
Glyma.05G213300 Glycine max HOM05D003548 ORTHO05D004066 1.2e-19 102.4 283 35.7
CiPaw.12G087100 Carya illinoinensis HOM05D003548 ORTHO05D004066 1.6e-19 102.1 239 36.8
Actinidia34177 Actinidia chinensis HOM05D003548 ORTHO05D004066 2.1e-19 101.7 269 34.6
Potri.001G097200 Populus trichocarpa HOM05D003548 ORTHO05D004066 2.1e-19 101.7 257 37.7
Sabra01G0072500 Salix brachista HOM05D003548 ORTHO05D004066 2.1e-19 101.7 282 36.5
CSS0041240 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 6.0e-19 100.1 275 35.6
CSS0049608 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 6.0e-19 100.1 275 35.6
ClCG01G002150 Citrullus lanatus HOM05D003548 ORTHO05D004066 6.0e-19 100.1 291 35.4
Duzib068G0600 Durio zibethinus HOM05D003548 ORTHO05D004066 6.0e-19 100.1 261 35.6
CSS0019271 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 7.8e-19 99.8 296 32.1
CSS0042414 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 7.8e-19 99.8 296 32.1
TWI81G0889 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 1.0e-18 99.4 291 34.0
TAR636G0920 Trochodendron aralioides HOM05D003548 ORTHO05D004066 1.0e-18 99.4 293 32.8
CsaV3_5G002270 Cucumis sativus L. HOM05D003548 ORTHO05D004066 1.3e-18 99.0 289 33.6
CAN.G532.68 Capsicum annuum HOM05D003548 ORTHO05D004066 1.7e-18 98.6 290 32.1
Aqoxy7G00221 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 3.0e-18 97.8 256 35.5
TAR629G2865 Trochodendron aralioides HOM05D003548 ORTHO05D004066 3.0e-18 97.8 283 34.3
Dinv37570 Davidia involucrata HOM05D003548 ORTHO05D004066 3.9e-18 97.4 239 35.1
Hma1.2p1_0216F.1_g091270 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 3.9e-18 97.4 294 33.0
TWI15G1126 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 5.1e-18 97.1 284 33.1
unitig_46.g18812 Utricularia gibba HOM05D003548 ORTHO05D004066 5.1e-18 97.1 272 33.1
Gohir.A09G191100 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.1e-17 95.9 287 34.5
Rhsim03G0196900 Rhododendron simsii HOM05D003548 ORTHO05D004066 1.1e-17 95.9 286 30.8
TPR.G3387 Trifolium pratense HOM05D000059 ORTHO05D004066 1.1e-17 95.9 282 35.8
COL.COLO4_08334 Corchorus olitorius HOM05D003548 ORTHO05D004066 1.5e-17 95.5 294 33.7
MELO3C005727.2 Cucumis melo HOM05D003548 ORTHO05D004066 1.5e-17 95.5 289 34.3
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 1.5e-17 95.5 281 31.7
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 1.9e-17 95.1 277 32.5
vmacro06591 Vaccinium macrocarpon HOM05D003548 ORTHO05D004066 1.9e-17 95.1 142 48.6
Thhalv10023333m.g Eutrema salsugineum HOM05D003548 ORTHO05D004066 2.5e-17 94.7 282 33.3
Peaxi162Scf00074g00156 Petunia axillaris HOM05D003548 ORTHO05D004066 3.3e-17 94.4 295 31.5
Lsat_1_v5_gn_9_57161 Lactuca sativa HOM05D003548 ORTHO05D004066 4.3e-17 94.0 263 33.8
Thecc.03G289200 Theobroma cacao HOM05D003548 ORTHO05D004066 4.3e-17 94.0 245 34.3
Lj4g0009292 Lotus japonicus HOM05D003548 ORTHO05D004066 5.6e-17 93.6 286 32.9
QL02p032544 Quercus lobata HOM05D003548 ORTHO05D004066 5.6e-17 93.6 236 33.5
Cfa012267 Carpinus fangiana HOM05D003548 ORTHO05D004066 7.3e-17 93.2 290 33.1
ECA246G0635 Erigeron canadensis HOM05D003548 ORTHO05D004066 9.6e-17 92.8 268 34.0
Gohir.D09G185600 Gossypium hirsutum HOM05D003548 ORTHO05D004066 9.6e-17 92.8 287 33.8
MD06G1096100 Malus domestica HOM05D003548 ORTHO05D004066 9.6e-17 92.8 287 33.8
TWI60G0243 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 9.6e-17 92.8 190 36.8
Gorai.006G208300 Gossypium raimondii HOM05D003548 ORTHO05D004066 1.6e-16 92.0 287 33.4
Prupe.5G110700 Prunus persica HOM05D003548 ORTHO05D004066 1.6e-16 92.0 289 33.9
Haze_08718 Corylus avellana HOM05D003548 ORTHO05D004066 2.1e-16 91.7 290 33.4
SalBow1G6595 Salvia bowleyana HOM05D003548 ORTHO05D004066 2.1e-16 91.7 258 33.3
Sp2g00590 Schrenkiella parvula HOM05D003548 ORTHO05D004066 2.1e-16 91.7 283 32.5
GSVIVG01019448001 Vitis vinifera HOM05D003548 ORTHO05D004066 2.1e-16 91.7 277 34.3
DCAR_008526 Daucus carota HOM05D003548 ORTHO05D004066 4.8e-16 90.5 208 37.5
Duzib205G0585 Durio zibethinus HOM05D003548 ORTHO05D004066 4.8e-16 90.5 289 31.5
Sed0003878 Sechium edule HOM05D003548 ORTHO05D004066 4.8e-16 90.5 294 34.4
Atru.chr9.2080 Acer truncatum HOM05D003548 ORTHO05D004066 6.2e-16 90.1 265 34.0
Hma1.2p1_0142F.1_g064160 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 6.2e-16 90.1 148 40.5
PSO063G3847 Papaver somniferum HOM05D003548 ORTHO05D004066 6.2e-16 90.1 287 33.1
Carub.0002s0067 Capsella rubella HOM05D003548 ORTHO05D004066 1.1e-15 89.4 280 33.2
Psat7g029120 Pisum sativum HOM05D003548 ORTHO05D004066 1.8e-15 88.6 283 33.6
Gorai.003G083700 Gossypium raimondii HOM05D003548 ORTHO05D004066 4.0e-15 87.4 294 31.3
AL2G10890 Arabidopsis lyrata HOM05D003548 ORTHO05D004066 6.9e-15 86.7 281 32.4
Duzib084G0464 Durio zibethinus HOM05D003548 ORTHO05D004066 9.0e-15 86.3 288 32.6
SalBow1G7748 Salvia bowleyana HOM05D003548 ORTHO05D004066 9.0e-15 86.3 258 32.6
THA.LOC104809354 Tarenaya hassleriana HOM05D003548 ORTHO05D004066 9.0e-15 86.3 283 35.0
Dinv38885 Davidia involucrata HOM05D003548 ORTHO05D004066 1.5e-14 85.5 305 30.2
Sopen08g030060 Solanum pennellii HOM05D003548 ORTHO05D004066 1.5e-14 85.5 299 32.4
Ca_10964_v3 Cicer arietinum L. HOM05D003548 ORTHO05D004066 2.0e-14 85.1 275 32.0
Potri.003G134200 Populus trichocarpa HOM05D003548 ORTHO05D004066 2.6e-14 84.7 265 32.5
CiPaw.11G126900 Carya illinoinensis HOM05D003548 ORTHO05D004066 3.4e-14 84.3 197 37.1
Eucgr.E00807 Eucalyptus grandis HOM05D003548 ORTHO05D004066 3.4e-14 84.3 256 35.2
AT1G64140 Arabidopsis thaliana HOM05D003548 ORTHO05D004066 4.4e-14 84.0 284 31.3
Migut.A00697 Erythranthe guttata HOM05D003548 ORTHO05D004066 4.4e-14 84.0 288 32.3
Gohir.D03G080300 Gossypium hirsutum HOM05D003548 ORTHO05D004066 4.4e-14 84.0 294 31.3
Zm00001eb159560 Zea mays HOM05D003548 ORTHO05D004066 4.4e-14 84.0 238 30.7
Gohir.A02G103700 Gossypium hirsutum HOM05D003548 ORTHO05D004066 5.8e-14 83.6 294 31.0
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 1.3e-13 82.4 219 33.3
PSO170G6721 Papaver somniferum HOM05D003548 ORTHO05D004066 1.7e-13 82.0 290 32.1
MD14G1116300 Malus domestica HOM05D003548 ORTHO05D004066 2.2e-13 81.6 297 32.0
DCAR_006852 Daucus carota HOM05D003548 ORTHO05D004066 4.9e-13 80.5 274 30.7
Os01g0621900 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 6.4e-13 80.1 247 30.4
BcaC04g22534 Brassica carinata HOM05D003548 ORTHO05D004066 8.4e-13 79.7 283 32.2
C09p18070 Brassica napus HOM05D003548 ORTHO05D004066 8.4e-13 79.7 283 32.2
BolC9t54704H Brassica oleracea HOM05D003548 ORTHO05D004066 1.1e-12 79.3 284 32.0
Lalb_Chr16g0390341 Lupinus albus HOM05D003548 ORTHO05D004066 1.4e-12 79.0 174 37.4
Solyc08g081760.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 1.4e-12 79.0 298 30.9
arahy.Tifrunner.gnm1.ann1.59PT6M Arachis hypogaea HOM05D003548 ORTHO05D004066 1.9e-12 78.6 291 29.9
MBI07_g38645_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 1.9e-12 78.6 277 30.3
Lj2P175T19 Lonicera japonica HOM05D003548 ORTHO05D004066 3.2e-12 77.8 125 44.8
CDE10G0521 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 4.2e-12 77.4 282 31.9
ECA232G3387 Erigeron canadensis HOM05D003548 ORTHO05D004066 4.2e-12 77.4 232 34.1
HanXRQChr09g0253141 Helianthus annuus HOM05D003548 ORTHO05D004066 7.1e-12 76.6 132 43.2
Oeu042375.2 Olea europaea HOM05D003548 ORTHO05D004066 7.1e-12 76.6 289 32.5
BcaB07g31439 Brassica carinata HOM05D003548 ORTHO05D008486 9.3e-12 76.3 281 31.7
Oeu059583.1 Olea europaea HOM05D003548 ORTHO05D004066 2.7e-11 74.7 290 31.0
Peaxi162Scf00102g01614 Petunia axillaris HOM05D003548 ORTHO05D004066 2.7e-11 74.7 223 29.6
ECA233G1322 Erigeron canadensis HOM05D003548 ORTHO05D004066 3.5e-11 74.3 221 33.5
PSO384G2366 Papaver somniferum HOM05D003548 ORTHO05D004066 3.5e-11 74.3 272 30.1
Sed0010954 Sechium edule HOM05D003548 ORTHO05D004066 3.5e-11 74.3 297 32.3
Manes.02G014900 Manihot esculenta HOM05D003548 ORTHO05D004066 4.6e-11 73.9 191 36.1
Rhsim02G0237200 Rhododendron simsii HOM05D003548 ORTHO05D004066 4.6e-11 73.9 215 32.6
Sabra03G0096600 Salix brachista HOM05D003548 ORTHO05D004066 4.6e-11 73.9 179 38.0
SHI07056 Sapria himalayana HOM05D003548 ORTHO05D004066 7.8e-11 73.2 128 42.2
arahy.Tifrunner.gnm1.ann1.36D870 Arachis hypogaea HOM05D003548 ORTHO05D004066 1.0e-10 72.8 244 32.0
Os02g0259100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 1.0e-10 72.8 211 32.2
Solyc08g008180.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 1.3e-10 72.4 293 28.7
PGR031G0552 Punica granatum HOM05D003548 ORTHO05D004066 1.7e-10 72.0 270 29.6
Zm00001eb238000 Zea mays HOM05D003548 ORTHO05D004066 1.7e-10 72.0 215 34.0
Hund11425 Selenicereus undatus HOM05D000154 ORTHO05D004066 2.3e-10 71.6 206 30.1
Zm00001eb204020 Zea mays HOM05D003548 ORTHO05D004066 2.3e-10 71.6 207 33.3
CARHR046800 Cardamine hirsuta HOM05D003548 ORTHO05D004066 3.9e-10 70.9 266 30.5
PGR042G3215 Punica granatum HOM05D003548 ORTHO05D004066 3.9e-10 70.9 224 30.8
CDE04G3080 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 5.1e-10 70.5 174 33.3
HanXRQChr06g0166281 Helianthus annuus HOM05D003548 ORTHO05D004066 6.6e-10 70.1 190 35.8
Sc01g0009980 Simmondsia chinensis HOM05D003548 ORTHO05D004066 6.6e-10 70.1 144 38.9
PGSC0003DMG400005830 Solanum tuberosum HOM05D003548 ORTHO05D004066 6.6e-10 70.1 288 28.5
SGA_v2.0_scaffold96G28999 Striga asiatica HOM05D003548 ORTHO05D004066 6.6e-10 70.1 161 34.8
EL10Ac5g12854 Beta vulgaris HOM05D003548 ORTHO05D004066 8.7e-10 69.7 157 38.9
Lj1P1010T36 Lonicera japonica HOM05D003548 ORTHO05D004066 1.1e-09 69.3 111 42.3
Phvul.002G161400 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 1.1e-09 69.3 256 32.0
PGSC0003DMG400012172 Solanum tuberosum HOM05D003548 ORTHO05D004066 1.1e-09 69.3 298 28.2
DCAR_020295 Daucus carota HOM05D003548 ORTHO05D004066 1.5e-09 68.9 242 30.6
PSO135G0411 Papaver somniferum HOM05D003548 ORTHO05D004066 1.5e-09 68.9 275 29.1
Ah.12g052120 Amaranthus hybridus HOM05D000265 ORTHO05D000161 1.9e-09 68.6 162 35.2
Ciclev10019140m.g Citrus clementina HOM05D003548 ORTHO05D004066 1.9e-09 68.6 145 39.3
HanXRQChr17g0533931 Helianthus annuus HOM05D003548 ORTHO05D004066 1.9e-09 68.6 262 31.3
Zm00001eb344910 Zea mays HOM05D003548 ORTHO05D004066 3.3e-09 67.8 209 33.0
Sopen08g004030 Solanum pennellii HOM05D003548 ORTHO05D004066 5.6e-09 67.0 293 28.3
unitig_32.g11608 Utricularia gibba HOM05D003548 ORTHO05D004066 5.6e-09 67.0 270 30.7
HanXRQChr15g0493381 Helianthus annuus HOM05D003548 ORTHO05D004066 7.3e-09 66.6 128 35.9
Os06g0523100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 7.3e-09 66.6 143 36.4
PGSC0003DMG400028194 Solanum tuberosum HOM05D003548 ORTHO05D004066 9.6e-09 66.2 189 29.6
Aa31LG2G1190 Aethionema arabicum HOM05D003548 ORTHO05D004066 2.1e-08 65.1 281 31.0
MSTRG.25643 Avicennia marina HOM05D003548 ORTHO05D004066 2.1e-08 65.1 140 39.3
BraA09t37059Z Brassica rapa HOM05D003548 ORTHO05D004066 2.1e-08 65.1 286 30.4
Nitab4.5_0005339g0010 Nicotiana tabacum HOM05D003548 ORTHO05D004066 2.1e-08 65.1 276 29.3
MSTRG.11944 Avicennia marina HOM05D003548 ORTHO05D004066 3.6e-08 64.3 246 30.5
A09p14120 Brassica napus HOM05D003548 ORTHO05D004066 6.2e-08 63.5 283 30.7
Oeu063042.1 Olea europaea HOM05D003548 ORTHO05D004066 6.2e-08 63.5 281 27.4
HPP92_006483 Vanilla planifolia HOM05D003548 ORTHO05D004066 6.2e-08 63.5 276 29.7
HPP92_023971 Vanilla planifolia HOM05D003548 ORTHO05D004066 1.1e-07 62.8 255 28.6
BcaB07g31525 Brassica carinata HOM05D003548 ORTHO05D004066 2.4e-07 61.6 285 28.4
Eucgr.D01792 Eucalyptus grandis HOM05D003548 ORTHO05D004066 2.4e-07 61.6 135 40.0
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 3.1e-07 61.2 149 33.6
Nitab4.5_0002944g0150 Nicotiana tabacum HOM05D003548 ORTHO05D004066 3.1e-07 61.2 170 32.9
A09p14950 Brassica napus HOM05D003548 ORTHO05D004066 6.9e-07 60.1 149 36.9
BraA09t37140Z Brassica rapa HOM05D003548 ORTHO05D004066 6.9e-07 60.1 149 36.9
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 9.0e-07 59.7 108 38.0
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 9.0e-07 59.7 142 35.9
RcHm_v2.0_Chr7g0196081 Rosa chinensis HOM05D003548 ORTHO05D004066 9.0e-07 59.7 266 29.3
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 1.2e-06 59.3 149 33.6
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 1.2e-06 59.3 279 25.8
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 2.6e-06 58.2 137 36.5
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 2.6e-06 58.2 130 34.6
FAN13G0102 Fragaria x ananassa HOM05D003548 ORTHO05D004066 3.4e-06 57.8 307 27.4
AUR62019776 Chenopodium quinoa HOM05D003548 ORTHO05D004066 4.5e-06 57.4 268 31.0
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 4.5e-06 57.4 102 40.2
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 4.5e-06 57.4 109 36.7
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 4.5e-06 57.4 109 36.7
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 4.5e-06 57.4 103 38.8
AUR62010777 Chenopodium quinoa HOM05D003548 ORTHO05D004066 5.8e-06 57.0 141 35.5
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 5.8e-06 57.0 135 33.3
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 5.8e-06 57.0 246 26.8
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 5.8e-06 57.0 130 33.1
CSS0034195 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 7.6e-06 56.6 112 34.8
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 7.6e-06 56.6 146 34.9
Nitab4.5_0001748g0030 Nicotiana tabacum HOM05D003548 ORTHO05D004066 7.6e-06 56.6 211 28.9
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 9.9e-06 56.2 104 39.4
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 9.9e-06 56.2 104 39.4
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 9.9e-06 56.2 90 41.1
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 9.9e-06 56.2 161 32.9


User provided reference genes

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