Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 0.0e+00 1531.5 861 100.0
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 0.0e+00 1216.8 1037 71.3
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 6.3e-171 605.5 1032 41.2
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 1.2e-169 601.3 1031 41.1
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 5.9e-161 572.4 1055 41.1
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 4.7e-94 350.1 1057 34.2
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 3.2e-42 177.9 1071 26.8
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 4.7e-41 174.1 864 25.8
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 4.8e-38 164.1 820 25.4
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 6.3e-38 163.7 869 24.9
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 8.2e-38 163.3 946 23.2
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 8.2e-38 163.3 931 24.1
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 3.1e-37 161.4 816 26.6
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 1.2e-36 159.5 820 25.7
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.0e-36 158.7 832 25.4
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 3.5e-36 157.9 370 31.4
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 1.1e-34 152.9 364 30.8
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 1.1e-34 152.9 350 35.1
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 3.2e-34 151.4 380 30.8
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 3.2e-34 151.4 863 23.6
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 4.2e-34 151.0 1027 24.6
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 9.4e-34 149.8 877 23.8
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 1.6e-33 149.1 376 28.7
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 1.6e-33 149.1 900 25.4
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 1.6e-33 149.1 824 23.8
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 2.7e-33 148.3 364 30.5
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 4.7e-33 147.5 992 22.5
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 1.0e-32 146.4 856 24.4
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 2.3e-32 145.2 800 24.8
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 4.0e-32 144.4 373 28.2
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 5.2e-32 144.1 360 30.6
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 6.7e-32 143.7 360 30.8
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 1.1e-31 142.9 888 23.9
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 2.6e-31 141.7 389 30.6
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 9.7e-31 139.8 373 29.5
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 2.2e-30 138.7 818 25.1
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 2.2e-30 138.7 852 24.1
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 2.2e-30 138.7 511 26.6
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 2.8e-30 138.3 872 23.9
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 8.2e-30 136.7 343 30.0
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 8.2e-30 136.7 881 23.2
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 8.2e-30 136.7 393 29.3
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.4e-29 136.0 710 25.6
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.8e-29 135.6 857 23.8
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 7.0e-29 133.7 334 28.7
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 9.1e-29 133.3 386 29.5
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 9.1e-29 133.3 818 23.6
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 9.1e-29 133.3 848 23.0
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 1.2e-28 132.9 961 23.1
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 1.6e-28 132.5 1113 22.3
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.0e-28 132.1 847 22.8
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 2.7e-28 131.7 723 24.6
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 7.7e-28 130.2 294 31.0
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 7.7e-28 130.2 945 21.9
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 8.5e-27 126.7 361 27.7
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 1.1e-26 126.3 1158 23.4
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 1.9e-26 125.6 366 28.1
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 1.9e-26 125.6 802 22.4
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 5.5e-26 124.0 371 27.8
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 9.4e-26 123.2 1113 22.5
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 9.4e-26 123.2 852 22.2
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 9.4e-26 123.2 881 22.4
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 1.6e-25 122.5 836 21.9
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 2.1e-25 122.1 304 30.3
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 2.7e-25 121.7 388 27.3
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 3.6e-25 121.3 368 28.3
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 4.7e-25 120.9 1060 21.6
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 8.0e-25 120.2 395 27.1
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 1.0e-24 119.8 367 27.5
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 3.0e-24 118.2 829 22.7
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 5.2e-24 117.5 375 26.9
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 5.2e-24 117.5 864 21.9
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 1.2e-23 116.3 407 25.8
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 2.0e-23 115.5 445 26.7
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 2.6e-23 115.2 889 23.4
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 2.6e-23 115.2 869 22.6
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 3.4e-23 114.8 901 23.2
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 7.5e-23 113.6 420 27.1
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 7.5e-23 113.6 885 23.4
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 8.3e-22 110.2 470 23.6
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.1e-21 109.8 280 29.6
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.1e-21 109.8 280 29.6
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.1e-21 109.8 280 29.6
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 1.4e-21 109.4 679 23.4
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 1.4e-21 109.4 411 26.5
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 3.1e-21 108.2 915 21.7
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 4.1e-21 107.8 877 21.4
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 7.7e-20 103.6 1040 22.8
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 2.9e-19 101.7 753 23.1
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 5.0e-19 100.9 125 44.8
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 6.5e-19 100.5 757 24.2
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 3.2e-18 98.2 263 30.8
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 1.6e-17 95.9 740 22.8
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 1.6e-17 95.9 266 29.3
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 3.6e-17 94.7 276 27.5
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 4.7e-17 94.4 952 22.7
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 2.3e-16 92.0 307 28.7
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 4.0e-16 91.3 750 23.5
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 2.0e-15 89.0 730 23.3
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 2.6e-15 88.6 351 26.2
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 4.4e-15 87.8 232 29.7
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 1.3e-14 86.3 359 22.6
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 2.2e-14 85.5 260 29.2
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 2.8e-14 85.1 996 22.6
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 2.8e-14 85.1 755 22.0
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 2.8e-14 85.1 157 32.5
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.1e-13 83.2 664 22.9
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 1.4e-13 82.8 262 28.2
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 1.4e-13 82.8 755 21.9
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 1.8e-13 82.4 379 23.0
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 1.8e-13 82.4 118 37.3
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 7.0e-13 80.5 101 39.6
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 1.7e-11 75.9 310 25.2
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 8.6e-11 73.6 141 32.6
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 3.3e-10 71.6 329 27.4
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 8.0e-09 67.0 127 29.9
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 1.4e-08 66.2 231 29.4
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 1.2e-07 63.2 139 38.8
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 2.0e-07 62.4 233 29.2
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 5.7e-07 60.8 277 23.5
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 2.2e-06 58.9 193 26.4


User provided reference genes

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