Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 2.0e-53 212.2 114 100.0
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 8.0e-50 200.3 127 88.2
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 1.1e-35 153.3 110 78.2
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 1.1e-33 146.7 107 74.8
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 2.9e-31 138.7 114 71.1
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 6.6e-28 127.5 109 65.1
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 2.5e-27 125.6 109 67.0
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 3.3e-27 125.2 114 61.4
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 4.3e-27 124.8 108 63.9
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 1.6e-26 122.9 109 62.4
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 2.1e-26 122.5 108 62.0
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 2.8e-26 122.1 109 61.5
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 4.7e-26 121.3 106 61.3
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 4.7e-26 121.3 108 61.1
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 6.2e-26 120.9 109 62.4
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.1e-25 120.2 109 62.4
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.1e-25 120.2 105 62.9
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 1.4e-25 119.8 109 62.4
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 1.4e-25 119.8 111 63.1
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 1.8e-25 119.4 110 58.2
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 2.4e-25 119.0 109 60.6
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 2.4e-25 119.0 105 61.9
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 2.4e-25 119.0 111 59.5
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 2.4e-25 119.0 109 60.6
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 3.1e-25 118.6 110 57.3
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 3.1e-25 118.6 105 61.9
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 3.1e-25 118.6 109 60.6
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 4.0e-25 118.2 109 60.6
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 4.0e-25 118.2 107 61.7
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 5.2e-25 117.9 108 60.2
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 6.9e-25 117.5 110 59.1
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 6.9e-25 117.5 109 59.6
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 6.9e-25 117.5 110 57.3
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 8.9e-25 117.1 109 59.6
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 8.9e-25 117.1 108 60.2
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 8.9e-25 117.1 105 59.0
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 8.9e-25 117.1 108 63.9
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 1.5e-24 116.3 108 60.2
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 1.5e-24 116.3 109 56.9
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.5e-24 116.3 108 60.2
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 1.5e-24 116.3 108 60.2
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 2.0e-24 115.9 109 58.7
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 2.0e-24 115.9 109 58.7
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.6e-24 115.5 108 60.2
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.6e-24 115.5 108 59.3
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 3.4e-24 115.2 108 59.3
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 4.4e-24 114.8 109 60.6
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 4.4e-24 114.8 108 59.3
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 4.4e-24 114.8 108 59.3
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 5.8e-24 114.4 106 58.5
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 7.6e-24 114.0 110 56.4
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 9.9e-24 113.6 108 55.6
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 9.9e-24 113.6 109 55.0
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 1.3e-23 113.2 107 58.9
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 3.8e-23 111.7 108 56.5
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 4.9e-23 111.3 109 57.8
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 6.4e-23 110.9 108 57.4
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 8.4e-23 110.5 111 57.7
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 1.1e-22 110.2 108 54.6
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 1.1e-22 110.2 112 51.8
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 1.1e-22 110.2 109 57.8
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 1.1e-22 110.2 109 56.0
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.4e-22 109.8 114 56.1
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 1.4e-22 109.8 108 56.5
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 2.4e-22 109.0 108 57.4
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 2.4e-22 109.0 111 55.9
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 3.2e-22 108.6 112 51.8
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 3.2e-22 108.6 108 57.4
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 3.2e-22 108.6 111 56.8
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 4.2e-22 108.2 107 53.3
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 5.4e-22 107.8 109 56.9
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 7.1e-22 107.5 112 51.8
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 2.1e-21 105.9 108 53.7
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 2.1e-21 105.9 108 55.6
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 2.7e-21 105.5 105 53.3
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 2.7e-21 105.5 108 53.7
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 2.7e-21 105.5 110 52.7
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 4.6e-21 104.8 100 57.0
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 6.0e-21 104.4 107 57.0
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 1.0e-20 103.6 114 57.0
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 1.0e-20 103.6 90 61.1
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 1.0e-20 103.6 90 61.1
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 1.3e-20 103.2 90 61.1
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 1.7e-20 102.8 114 56.1
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 6.6e-20 100.9 107 50.5
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 1.1e-19 100.1 109 53.2
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 3.3e-19 98.6 111 53.2
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 1.3e-18 96.7 86 64.0
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 8.1e-18 94.0 74 71.6
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 3.1e-17 92.0 92 55.4
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 9.0e-17 90.5 107 46.7
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 1.5e-16 89.7 105 47.6
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 1.5e-16 89.7 105 47.6
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 2.6e-16 89.0 108 44.4
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 3.4e-16 88.6 108 47.2
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 9.9e-16 87.0 109 46.8
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 1.3e-15 86.7 87 50.6
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 1.7e-15 86.3 107 46.7
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 7.1e-14 80.9 106 40.6
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 2.7e-13 79.0 101 42.6
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 4.6e-13 78.2 107 49.5
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 5.1e-12 74.7 57 77.2
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 1.1e-11 73.6 58 62.1
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 3.3e-11 72.0 58 60.3
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 7.4e-11 70.9 59 57.6
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 8.1e-10 67.4 74 45.9
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.5e-08 63.2 58 53.4
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 3.4e-08 62.0 105 33.3
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 5.8e-08 61.2 60 50.0
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 2.4e-06 55.8 50 70.0
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 9.3e-06 53.9 79 46.8


User provided reference genes

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