Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g069210 Amaranthus hybridus HOM05D002646 ORTHO05D002782 3.3e-80 301.6 148 100.0
Ah.13g074290 Amaranthus hybridus HOM05D002646 ORTHO05D002782 1.5e-69 266.2 148 89.2
Ah.13g069980 Amaranthus hybridus HOM05D002646 ORTHO05D002782 2.5e-67 258.8 148 87.8
Ah.12g056930 Amaranthus hybridus HOM05D002646 ORTHO05D002782 8.5e-60 233.8 130 90.8
EL10Ac2g03761 Beta vulgaris HOM05D002646 ORTHO05D002782 2.8e-47 192.2 149 66.4
Hund22797 Selenicereus undatus HOM05D002646 ORTHO05D002782 1.9e-35 152.9 150 53.3
Sc19g0004610 Simmondsia chinensis HOM05D002646 ORTHO05D002782 3.2e-30 135.6 120 55.0
Haze_16825 Corylus avellana HOM05D002646 ORTHO05D002782 7.0e-30 134.4 128 54.7
Dinv29528 Davidia involucrata HOM05D002646 ORTHO05D002782 3.5e-29 132.1 143 51.0
ClCG05G002180 Citrullus lanatus HOM05D002646 ORTHO05D002782 7.8e-29 131.0 116 51.7
MELO3C006182.2 Cucumis melo HOM05D002646 ORTHO05D002782 1.3e-28 130.2 130 47.7
CsaV3_3G009620 Cucumis sativus L. HOM05D002646 ORTHO05D002782 2.3e-28 129.4 130 47.7
Actinidia12264 Actinidia chinensis HOM05D002646 ORTHO05D002782 6.6e-28 127.9 150 49.3
Atru.chr5.320 Acer truncatum HOM05D002646 ORTHO05D002782 4.3e-27 125.2 154 46.1
Sabra14G0050200 Salix brachista HOM05D002646 ORTHO05D002782 4.3e-27 125.2 92 64.1
TAR374G0079 Trochodendron aralioides HOM05D002646 ORTHO05D002782 7.3e-27 124.4 122 54.1
Potri.014G070500 Populus trichocarpa HOM05D002646 ORTHO05D002782 9.5e-27 124.0 125 50.4
Rhsim08G0118000 Rhododendron simsii HOM05D002646 ORTHO05D002782 9.5e-27 124.0 102 57.8
RhsimUnG0099800 Rhododendron simsii HOM05D002646 ORTHO05D002782 9.5e-27 124.0 102 57.8
Sed0003475 Sechium edule HOM05D002646 ORTHO05D002782 2.1e-26 122.9 100 57.0
CSS0029682 Camellia sinensis var. sinensis HOM05D002646 ORTHO05D002782 2.8e-26 122.5 152 48.7
CSS0036552 Camellia sinensis var. sinensis HOM05D002646 ORTHO05D002782 2.8e-26 122.5 156 47.4
COL.COLO4_12558 Corchorus olitorius HOM05D002646 ORTHO05D002782 2.8e-26 122.5 161 42.2
Duzib268G0058 Durio zibethinus HOM05D002646 ORTHO05D002782 2.8e-26 122.5 90 63.3
arahy.Tifrunner.gnm1.ann1.HKT7FP Arachis hypogaea HOM05D002646 ORTHO05D002782 3.6e-26 122.1 149 45.0
Duzib268G0077 Durio zibethinus HOM05D002646 ORTHO05D002782 3.6e-26 122.1 90 63.3
Duzib268G1615 Durio zibethinus HOM05D002646 ORTHO05D002782 8.0e-26 120.9 152 46.1
Gohir.D08G155000 Gossypium hirsutum HOM05D002646 ORTHO05D002782 8.0e-26 120.9 91 59.3
Gorai.004G161000 Gossypium raimondii HOM05D002646 ORTHO05D002782 8.0e-26 120.9 91 59.3
arahy.Tifrunner.gnm1.ann1.7IJL1I Arachis hypogaea HOM05D002646 ORTHO05D002782 1.8e-25 119.8 149 44.3
Nn4g26422 Nelumbo nucifera HOM05D002646 ORTHO05D002782 1.8e-25 119.8 159 43.4
Gohir.A08G133800 Gossypium hirsutum HOM05D002646 ORTHO05D002782 3.1e-25 119.0 147 43.5
Cc02_g36600 Coffea canephora HOM05D002646 ORTHO05D002782 6.8e-25 117.9 120 47.5
Thecc.01G375100 Theobroma cacao HOM05D002646 ORTHO05D002782 6.8e-25 117.9 115 51.3
Psat3g115520 Pisum sativum HOM05D002646 ORTHO05D002782 8.9e-25 117.5 147 46.3
Lalb_Chr03g0039441 Lupinus albus HOM05D002646 ORTHO05D002782 1.2e-24 117.1 116 50.0
Ciclev10020287m.g Citrus clementina HOM05D002646 ORTHO05D002782 2.6e-24 115.9 82 62.2
THA.LOC104817013 Tarenaya hassleriana HOM05D002646 ORTHO05D002782 2.6e-24 115.9 131 49.6
TWI23G1057 Tripterygium wilfordii HOM05D002646 ORTHO05D002782 2.6e-24 115.9 152 44.1
vmacro13392 Vaccinium macrocarpon HOM05D002646 ORTHO05D002782 2.6e-24 115.9 122 53.3
Lj1g0023852 Lotus japonicus HOM05D002646 ORTHO05D002782 3.4e-24 115.5 142 45.1
FAN01G3025 Fragaria x ananassa HOM05D002646 ORTHO05D002782 5.8e-24 114.8 90 58.9
GSVIVG01027622001 Vitis vinifera HOM05D002646 ORTHO05D002782 5.8e-24 114.8 86 58.1
FvH4_7g12010 Fragaria vesca HOM05D002646 ORTHO05D002782 7.5e-24 114.4 90 57.8
FAN06G4772 Fragaria x ananassa HOM05D002646 ORTHO05D002782 7.5e-24 114.4 90 57.8
FAN10G1248 Fragaria x ananassa HOM05D002646 ORTHO05D002782 7.5e-24 114.4 90 57.8
FAN10G4284 Fragaria x ananassa HOM05D002646 ORTHO05D002782 7.5e-24 114.4 90 57.8
Medtr7g075010 Medicago truncatula HOM05D002646 ORTHO05D002782 7.5e-24 114.4 151 44.4
Solyc01g091450.3 Solanum lycopersicum HOM05D002646 ORTHO05D002782 1.3e-23 113.6 149 42.3
HanXRQChr04g0122351 Helianthus annuus HOM05D002646 ORTHO05D002782 1.7e-23 113.2 116 48.3
Sopen01g037190 Solanum pennellii HOM05D002646 ORTHO05D002782 1.7e-23 113.2 110 50.9
Eucgr.G00320 Eucalyptus grandis HOM05D002646 ORTHO05D002782 2.2e-23 112.8 96 55.2
RcHm_v2.0_Chr1g0350721 Rosa chinensis HOM05D002646 ORTHO05D002782 2.2e-23 112.8 127 49.6
Ca_07824_v3 Cicer arietinum L. HOM05D002646 ORTHO05D002782 3.7e-23 112.1 99 56.6
CANSAT11G0871 Cannabis sativa HOM05D002646 ORTHO05D002782 4.9e-23 111.7 103 54.4
Manes.01G265200 Manihot esculenta HOM05D002646 ORTHO05D002782 4.9e-23 111.7 92 60.9
FAN03G1830 Fragaria x ananassa HOM05D002646 ORTHO05D002782 6.4e-23 111.3 120 47.5
Glyma.18G221100 Glycine max HOM05D002646 ORTHO05D002782 6.4e-23 111.3 149 38.9
Phvul.008G083500 Phaseolus vulgaris HOM05D002646 ORTHO05D002782 6.4e-23 111.3 144 43.1
PGSC0003DMG400012755 Solanum tuberosum HOM05D002646 ORTHO05D002782 8.3e-23 110.9 147 41.5
Nitab4.5_0002993g0040 Nicotiana tabacum HOM05D002646 ORTHO05D002782 1.1e-22 110.5 110 51.8
Phvul.008G076800 Phaseolus vulgaris HOM05D002646 ORTHO05D002782 1.1e-22 110.5 144 41.7
Peaxi162Scf00021g01520 Petunia axillaris HOM05D002646 ORTHO05D002782 1.4e-22 110.2 89 57.3
PGR042G3460 Punica granatum HOM05D002646 ORTHO05D002782 1.4e-22 110.2 146 46.6
QL12p017558 Quercus lobata HOM05D002646 ORTHO05D002782 1.4e-22 110.2 90 56.7
Aa31LG1G11300 Aethionema arabicum HOM05D002646 ORTHO05D002782 1.9e-22 109.8 103 46.6
Prupe.2G146700 Prunus persica HOM05D002646 ORTHO05D002782 1.9e-22 109.8 98 55.1
TPR.G26954 Trifolium pratense HOM05D002646 ORTHO05D002782 1.9e-22 109.8 147 43.5
Glyma.09G268500 Glycine max HOM05D002646 ORTHO05D002782 3.2e-22 109.0 149 39.6
CAN.G388.3 Capsicum annuum HOM05D002646 ORTHO05D002782 9.2e-22 107.5 86 58.1
MD08G1028000 Malus domestica HOM05D002646 ORTHO05D002782 9.2e-22 107.5 119 48.7
MBI04_g32239_MAGBIO Magnolia biondii HOM05D002646 ORTHO05D002782 1.6e-21 106.7 127 46.5
PSO782G0929 Papaver somniferum HOM05D002646 ORTHO05D002782 4.6e-21 105.1 104 48.1
Aqoxy7G00603 Aquilegia oxysepala HOM05D002646 ORTHO05D002782 6.0e-21 104.8 144 43.1
Lsat_1_v5_gn_7_7441 Lactuca sativa HOM05D002646 ORTHO05D002782 6.0e-21 104.8 142 40.8
Nitab4.5_0000457g0400 Nicotiana tabacum HOM05D002646 ORTHO05D002782 6.0e-21 104.8 110 50.0
PSO478G1528 Papaver somniferum HOM05D002646 ORTHO05D002782 6.0e-21 104.8 104 49.0
MSTRG.13432 Avicennia marina HOM05D002646 ORTHO05D002782 7.8e-21 104.4 155 43.9
AL1G10350 Arabidopsis lyrata HOM05D002646 ORTHO05D002782 1.0e-20 104.0 94 51.1
Lj9A571T76 Lonicera japonica HOM05D002646 ORTHO05D002782 1.3e-20 103.6 89 56.2
CDE11G0049 Ceratophyllum demersum HOM05D002646 ORTHO05D002782 2.3e-20 102.8 115 47.0
DCAR_006871 Daucus carota HOM05D002646 ORTHO05D002782 2.3e-20 102.8 125 47.2
AT1G01970 Arabidopsis thaliana HOM05D002646 ORTHO05D002782 3.0e-20 102.4 108 43.5
Thhalv10007755m.g Eutrema salsugineum HOM05D002646 ORTHO05D002782 6.6e-20 101.3 90 50.0
Carub.0001s0027 Capsella rubella HOM05D002646 ORTHO05D002782 4.3e-19 98.6 89 50.6
Sp1g00330 Schrenkiella parvula HOM05D002646 ORTHO05D002782 7.3e-19 97.8 88 52.3
CARHR000380 Cardamine hirsuta HOM05D002646 ORTHO05D002782 1.2e-18 97.1 94 51.1
CiPaw.01G261200 Carya illinoinensis HOM05D002646 ORTHO05D002782 2.1e-18 96.3 57 71.9
SGA_v2.0_scaffold16G07867 Striga asiatica HOM05D002646 ORTHO05D002782 2.1e-18 96.3 73 60.3
SGA_v2.0_scaffold48G17914 Striga asiatica HOM05D002646 ORTHO05D002782 2.1e-18 96.3 72 59.7
Migut.E00070 Erythranthe guttata HOM05D002646 ORTHO05D002782 2.8e-18 95.9 72 58.3
A10p00160 Brassica napus HOM05D002646 ORTHO05D002782 4.7e-18 95.1 95 49.5
BraA10t42295Z Brassica rapa HOM05D002646 ORTHO05D002782 4.7e-18 95.1 95 49.5
unitig_8.g3957 Utricularia gibba HOM05D002646 ORTHO05D002782 4.7e-18 95.1 92 52.2
AUR62030050 Chenopodium quinoa HOM05D002646 ORTHO05D002782 2.3e-17 92.8 57 68.4
HPP92_001656 Vanilla planifolia HOM05D002646 ORTHO05D002782 2.3e-17 92.8 83 49.4
SGA_v2.0_scaffold63G21638 Striga asiatica HOM05D002646 ORTHO05D002782 3.1e-17 92.4 72 58.3
AUR62002634 Chenopodium quinoa HOM05D002646 ORTHO05D002782 6.8e-17 91.3 57 66.7
Dinv43720 Davidia involucrata HOM05D002646 ORTHO05D002782 2.0e-16 89.7 57 66.7
ATR0697G028 Amborella trichopoda HOM05D002646 ORTHO05D002782 1.7e-15 86.7 119 40.3
BcaNung05290 Brassica carinata HOM05D002646 ORTHO05D002782 1.9e-14 83.2 91 47.3
C05p00160 Brassica napus HOM05D002646 ORTHO05D002782 1.9e-14 83.2 91 47.3
BolC5t28806H Brassica oleracea HOM05D002646 ORTHO05D002782 1.9e-14 83.2 91 47.3
BcaB03g13627 Brassica carinata HOM05D002646 ORTHO05D002782 7.1e-14 81.3 77 51.9
Oeu003485.1 Olea europaea HOM05D002646 ORTHO05D002782 5.1e-12 75.1 57 52.6
Zm00001eb329950 Zea mays HOM05D002646 ORTHO05D002782 1.1e-11 73.9 81 42.0
SEGI_14547 Sequoiadendron giganteum HOM05D007858 ORTHO05D002782 1.9e-11 73.2 81 39.5
Actinidia31415 Actinidia chinensis HOM05D002646 ORTHO05D002782 5.6e-11 71.6 48 62.5
Os07g0661900 Oryza sativa ssp. japonica HOM05D002646 ORTHO05D002782 4.0e-09 65.5 89 41.6


User provided reference genes

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