Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.2e-70 269.6 132 100.0
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 2.5e-39 165.6 127 66.1
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 4.3e-39 164.9 127 66.9
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 6.9e-37 157.5 127 64.6
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 8.7e-32 140.6 131 58.0
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 7.7e-20 100.9 83 61.4
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 1.3e-19 100.1 120 45.0
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 3.8e-19 98.6 119 47.1
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 1.4e-18 96.7 125 47.2
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 1.9e-18 96.3 116 44.0
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 2.5e-18 95.9 128 47.7
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 3.2e-18 95.5 123 45.5
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 5.5e-18 94.7 126 46.8
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 5.5e-18 94.7 131 46.6
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 7.2e-18 94.4 127 45.7
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 9.4e-18 94.0 131 48.1
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.2e-17 93.6 124 47.6
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 2.1e-17 92.8 120 44.2
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.1e-17 92.8 87 55.2
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 3.6e-17 92.0 87 54.0
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 3.6e-17 92.0 87 54.0
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 8.0e-17 90.9 122 45.1
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 1.0e-16 90.5 123 43.9
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.0e-16 90.5 84 53.6
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 1.4e-16 90.1 90 56.7
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 1.4e-16 90.1 90 56.7
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 1.4e-16 90.1 131 42.0
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 2.3e-16 89.4 102 49.0
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 2.3e-16 89.4 123 43.1
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 3.9e-16 88.6 129 44.2
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 3.9e-16 88.6 87 55.2
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 5.2e-16 88.2 122 43.4
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 5.2e-16 88.2 81 56.8
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 5.2e-16 88.2 87 55.2
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 1.1e-15 87.0 84 53.6
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 1.5e-15 86.7 121 40.5
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 1.5e-15 86.7 121 43.8
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 2.0e-15 86.3 126 42.1
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 2.6e-15 85.9 110 48.2
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 2.6e-15 85.9 119 44.5
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 4.4e-15 85.1 115 43.5
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 5.7e-15 84.7 131 42.7
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 5.7e-15 84.7 115 45.2
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 7.4e-15 84.3 126 42.1
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 7.4e-15 84.3 121 43.0
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 9.7e-15 84.0 126 43.7
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.7e-14 83.2 121 40.5
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.7e-14 83.2 119 39.5
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 1.7e-14 83.2 130 43.8
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 2.2e-14 82.8 101 44.6
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 2.8e-14 82.4 124 44.4
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 2.8e-14 82.4 119 42.9
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 4.8e-14 81.6 125 43.2
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 4.8e-14 81.6 120 43.3
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 6.3e-14 81.3 122 38.5
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 6.3e-14 81.3 119 39.5
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 6.3e-14 81.3 140 40.0
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 1.1e-13 80.5 75 58.7
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.1e-13 80.5 120 40.8
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 1.4e-13 80.1 121 43.0
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.4e-13 80.1 122 41.0
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.4e-13 80.1 85 52.9
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 1.8e-13 79.7 122 41.0
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 1.8e-13 79.7 119 39.5
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.8e-13 79.7 122 41.0
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.8e-13 79.7 120 43.3
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 2.4e-13 79.3 71 57.7
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 2.4e-13 79.3 120 44.2
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 3.1e-13 79.0 75 54.7
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 4.1e-13 78.6 109 42.2
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 4.1e-13 78.6 107 45.8
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 5.3e-13 78.2 99 48.5
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 5.3e-13 78.2 118 39.8
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 7.0e-13 77.8 92 51.1
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 7.0e-13 77.8 119 42.0
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 1.2e-12 77.0 86 51.2
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 2.0e-12 76.3 124 39.5
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 2.6e-12 75.9 87 48.3
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 4.5e-12 75.1 124 38.7
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 5.9e-12 74.7 117 42.7
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 7.7e-12 74.3 88 45.5
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 7.7e-12 74.3 80 50.0
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 1.0e-11 73.9 120 40.0
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 1.0e-11 73.9 49 71.4
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.0e-11 73.9 85 49.4
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 1.0e-11 73.9 143 36.4
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 1.0e-11 73.9 103 39.8
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 1.3e-11 73.6 85 49.4
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 1.7e-11 73.2 120 37.5
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 1.7e-11 73.2 125 38.4
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 1.7e-11 73.2 125 40.0
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 2.2e-11 72.8 103 42.7
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 2.9e-11 72.4 164 36.6
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 2.9e-11 72.4 49 67.3
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 2.9e-11 72.4 54 61.1
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 3.8e-11 72.0 86 44.2
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 3.8e-11 72.0 80 47.5
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 5.0e-11 71.6 80 50.0
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 5.0e-11 71.6 111 39.6
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 6.5e-11 71.2 88 47.7
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 8.5e-11 70.9 50 62.0
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 1.1e-10 70.5 54 63.0
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 1.1e-10 70.5 125 38.4
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 1.5e-10 70.1 50 62.0
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 1.5e-10 70.1 83 48.2
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 1.9e-10 69.7 126 38.9
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 1.9e-10 69.7 51 62.7
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 1.9e-10 69.7 128 43.8
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 2.5e-10 69.3 86 46.5
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 3.2e-10 68.9 51 64.7
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 3.2e-10 68.9 122 41.0
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 3.2e-10 68.9 55 56.4
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 4.2e-10 68.6 102 43.1
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 4.2e-10 68.6 129 37.2
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 4.2e-10 68.6 86 46.5
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 5.5e-10 68.2 46 69.6
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 5.5e-10 68.2 46 69.6
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 9.4e-10 67.4 118 41.5
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.2e-09 67.0 53 62.3
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.2e-09 67.0 46 65.2
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 4.7e-09 65.1 118 39.0
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 6.1e-09 64.7 127 39.4
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 6.1e-09 64.7 127 39.4
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 8.0e-09 64.3 62 46.8
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 8.0e-09 64.3 62 46.8
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 2.3e-08 62.8 128 39.8
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 2.0e-07 59.7 51 54.9
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 1.3e-06 57.0 126 38.1
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 1.7e-06 56.6 107 34.6


User provided reference genes

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