Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 5.3e-105 384.4 200 100.0
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 3.2e-70 268.9 206 74.3
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 1.2e-69 266.9 206 73.8
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 1.2e-64 250.4 203 69.0
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 1.4e-60 236.9 198 70.7
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 2.1e-45 186.4 206 58.3
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.3e-42 177.2 206 57.3
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.3e-42 177.2 206 57.3
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 1.2e-40 170.6 206 52.4
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 2.7e-40 169.5 194 55.7
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 7.8e-40 167.9 197 53.8
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 2.9e-39 166.0 196 53.6
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 5.0e-39 165.2 199 53.3
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 8.6e-39 164.5 201 53.2
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 9.5e-38 161.0 205 52.7
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 6.1e-37 158.3 206 51.5
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 8.0e-37 157.9 206 51.0
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 8.0e-37 157.9 206 51.0
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 1.4e-36 157.1 195 51.8
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 1.4e-36 157.1 209 51.2
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 2.3e-36 156.4 196 52.0
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 1.5e-35 153.7 208 49.5
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 1.5e-35 153.7 196 52.0
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 2.6e-35 152.9 197 50.8
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 9.8e-35 151.0 202 51.5
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 1.3e-34 150.6 201 49.3
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 1.3e-34 150.6 201 51.2
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 2.2e-34 149.8 186 55.9
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 2.9e-34 149.4 193 52.8
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 4.9e-34 148.7 204 50.0
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 6.4e-34 148.3 201 51.2
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 6.4e-34 148.3 202 50.5
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 6.4e-34 148.3 200 51.0
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 8.3e-34 147.9 200 51.0
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 8.3e-34 147.9 190 52.1
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 3.2e-33 146.0 195 50.8
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 5.4e-33 145.2 206 49.5
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 1.2e-32 144.1 200 49.5
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 1.6e-32 143.7 187 55.1
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 4.6e-32 142.1 197 49.2
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 4.6e-32 142.1 197 49.2
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 7.8e-32 141.4 206 47.6
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 1.3e-31 140.6 199 49.2
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 1.7e-31 140.2 209 48.3
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 3.9e-31 139.0 186 51.1
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 3.9e-31 139.0 186 51.1
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 5.0e-31 138.7 196 49.0
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 6.6e-31 138.3 205 48.8
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 6.6e-31 138.3 190 50.5
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 6.6e-31 138.3 198 48.5
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 6.6e-31 138.3 206 48.5
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 6.6e-31 138.3 189 48.1
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 8.6e-31 137.9 210 48.1
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 8.6e-31 137.9 206 48.5
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 1.1e-30 137.5 199 48.2
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.1e-30 137.5 201 47.8
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 1.5e-30 137.1 198 50.5
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 1.9e-30 136.7 205 47.8
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 1.9e-30 136.7 197 49.2
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 2.5e-30 136.3 195 48.7
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.5e-30 136.3 186 50.5
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 2.5e-30 136.3 206 48.1
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 2.5e-30 136.3 206 48.1
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 4.3e-30 135.6 195 48.2
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 4.3e-30 135.6 206 48.1
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 7.3e-30 134.8 192 47.4
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 9.5e-30 134.4 198 47.0
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 1.6e-29 133.7 197 48.7
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 2.8e-29 132.9 199 46.7
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 3.6e-29 132.5 205 47.3
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 4.7e-29 132.1 208 47.1
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 4.7e-29 132.1 198 47.5
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 8.0e-29 131.3 195 46.7
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 8.0e-29 131.3 206 46.6
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 8.0e-29 131.3 194 49.0
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 1.4e-28 130.6 207 46.4
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 3.1e-28 129.4 199 46.2
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 5.2e-28 128.6 190 48.4
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 8.9e-28 127.9 201 47.3
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 8.9e-28 127.9 184 49.5
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 1.2e-27 127.5 190 47.9
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 1.5e-27 127.1 202 47.0
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 2.0e-27 126.7 188 48.4
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 2.0e-27 126.7 200 46.5
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 3.4e-27 125.9 193 49.2
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 4.4e-27 125.6 201 46.8
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 5.8e-27 125.2 184 48.9
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 7.5e-27 124.8 190 47.4
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 1.3e-26 124.0 184 48.4
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.3e-26 124.0 184 47.8
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 2.9e-26 122.9 201 45.8
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 2.9e-26 122.9 206 46.1
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 3.7e-26 122.5 196 47.4
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 1.4e-25 120.6 177 48.6
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 1.4e-25 120.6 186 46.8
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 1.4e-25 120.6 201 43.8
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 2.4e-25 119.8 189 45.5
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 2.4e-25 119.8 191 44.0
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 3.2e-25 119.4 197 44.2
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 4.1e-25 119.0 187 47.6
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 5.4e-25 118.6 188 47.3
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 5.4e-25 118.6 176 48.3
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 5.4e-25 118.6 211 44.5
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 7.0e-25 118.2 191 47.1
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 7.0e-25 118.2 190 46.8
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 9.2e-25 117.9 182 49.5
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 2.0e-24 116.7 199 46.2
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 2.0e-24 116.7 182 45.1
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 3.5e-24 115.9 202 46.5
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 4.6e-24 115.5 196 42.9
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 6.0e-24 115.2 179 45.8
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 7.8e-24 114.8 186 45.2
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 1.3e-23 114.0 196 42.9
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 2.3e-23 113.2 190 46.3
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 5.0e-23 112.1 196 46.4
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 8.6e-23 111.3 192 45.8
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 1.5e-22 110.5 201 43.8
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.5e-22 110.5 192 45.8
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 2.5e-22 109.8 96 66.7
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 3.3e-22 109.4 195 42.1
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 5.6e-22 108.6 243 38.3
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 7.3e-22 108.2 194 42.8
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 9.5e-22 107.8 178 46.6
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 1.2e-21 107.5 201 42.3
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 1.6e-21 107.1 201 41.8
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 2.1e-21 106.7 141 48.2
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 2.1e-21 106.7 187 45.5
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 1.1e-20 104.4 89 71.9
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 1.1e-20 104.4 89 71.9
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 6.8e-20 101.7 201 43.3
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 6.8e-20 101.7 213 40.8
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 8.9e-20 101.3 180 42.8
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 1.2e-19 100.9 194 40.2
CARHR265540 Cardamine hirsuta HOM05D002831 ORTHO05D004341 2.0e-19 100.1 112 57.1
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 2.0e-19 100.1 114 55.3
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 2.6e-19 99.8 196 40.8
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 3.4e-19 99.4 181 47.0
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 4.4e-19 99.0 191 42.4
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 9.9e-19 97.8 93 64.5
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 1.3e-18 97.4 193 38.9
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 1.7e-18 97.1 191 40.8
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 2.2e-18 96.7 194 39.2
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 2.9e-18 96.3 198 38.9
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 4.9e-18 95.5 92 65.2
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 6.4e-18 95.1 198 40.4
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 1.4e-17 94.0 204 38.2
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 2.4e-17 93.2 183 38.8
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 5.4e-17 92.0 203 41.4
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 5.4e-17 92.0 206 36.4
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 7.1e-17 91.7 88 67.0
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 7.1e-17 91.7 200 39.5
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 7.1e-17 91.7 192 40.6
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 9.2e-17 91.3 190 38.4
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.6e-16 90.5 190 38.4
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.7e-16 89.7 190 37.9
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 3.5e-16 89.4 193 38.3
Carub.0007s1527 Capsella rubella HOM05D002831 ORTHO05D004341 6.0e-16 88.6 72 76.4
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 7.8e-16 88.2 190 37.4
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 7.8e-16 88.2 232 37.5
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 1.0e-15 87.8 124 41.9
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 3.0e-15 86.3 194 38.1
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 1.1e-14 84.3 190 37.4
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.1e-14 84.3 190 37.4
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 1.5e-14 84.0 197 38.6
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 1.9e-14 83.6 206 37.9
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 5.6e-14 82.0 197 37.6
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 1.6e-13 80.5 204 37.7
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 2.1e-13 80.1 206 37.9
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 2.0e-11 73.6 95 55.8
Lsat_1_v5_gn_9_56481 Lactuca sativa HOM05D002831 ORTHO05D004341 7.6e-11 71.6 191 35.1
Zm00001eb229390 Zea mays HOM05D002831 ORTHO05D004341 7.6e-11 71.6 189 37.0
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 1.3e-10 70.9 190 36.8
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 1.3e-10 70.9 189 38.1
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 1.7e-10 70.5 193 34.2
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 1.7e-10 70.5 204 34.8
HanXRQChr14g0462531 Helianthus annuus HOM05D002831 ORTHO05D004341 3.2e-09 66.2 204 32.8
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 3.2e-09 66.2 93 50.5
Nn1g08525 Nelumbo nucifera HOM05D002831 ORTHO05D004341 4.1e-09 65.9 107 43.9
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 3.5e-08 62.8 191 32.5
Lsat_1_v5_gn_2_131301 Lactuca sativa HOM05D002831 ORTHO05D004341 2.3e-07 60.1 202 33.2
BolC2t08091H Brassica oleracea HOM05D002831 ORTHO05D004341 6.6e-07 58.5 59 67.8
Nn1g01625 Nelumbo nucifera HOM05D002831 ORTHO05D004341 1.1e-06 57.8 45 80.0
Pp3c26_7830 Physcomitrium patens HOM05D040812 ORTHO05D031180 4.3e-06 55.8 198 30.8
ECA238G2131 Erigeron canadensis HOM05D002831 ORTHO05D004341 7.3e-06 55.1 198 30.3


User provided reference genes

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