Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g068460 Amaranthus hybridus HOM05D006594 ORTHO05D008383 1.1e-279 966.1 499 100.0
AUR62021215 Chenopodium quinoa HOM05D006594 ORTHO05D008383 2.5e-148 529.6 416 68.5
Sc19g0001600 Simmondsia chinensis HOM05D006594 ORTHO05D008383 1.4e-143 513.8 466 58.2
Duzib205G1849 Durio zibethinus HOM05D006594 ORTHO05D008383 6.3e-123 445.3 467 50.7
COL.COLO4_14285 Corchorus olitorius HOM05D006594 ORTHO05D008383 6.3e-115 418.7 457 48.8
Manes.14G027600 Manihot esculenta HOM05D006594 ORTHO05D008383 2.0e-113 413.7 473 49.3
Gorai.008G279100 Gossypium raimondii HOM05D006594 ORTHO05D008383 1.0e-112 411.4 450 49.8
Ciclev10004900m.g Citrus clementina HOM05D006594 ORTHO05D008383 2.2e-112 410.2 477 48.8
Gohir.D12G260500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 1.9e-111 407.1 450 49.3
Cfa008301 Carpinus fangiana HOM05D006594 ORTHO05D008383 1.6e-110 404.1 471 46.7
AUR62016008 Chenopodium quinoa HOM05D006594 ORTHO05D008383 1.6e-110 404.1 446 54.3
Sabra15G0151500 Salix brachista HOM05D006594 ORTHO05D008383 4.7e-110 402.5 478 47.9
Potri.015G140900 Populus trichocarpa HOM05D006594 ORTHO05D008383 5.7e-108 395.6 473 48.0
CSS0002088 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 4.8e-107 392.5 467 48.8
PGSC0003DMG400014324 Solanum tuberosum HOM05D006594 ORTHO05D008383 1.1e-106 391.3 461 48.2
CSS0024482 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 2.4e-106 390.2 467 48.6
Peaxi162Scf00915g00007 Petunia axillaris HOM05D006594 ORTHO05D008383 1.6e-105 387.5 462 47.2
Hma1.2p1_1323F.1_g275590 Hydrangea macrophylla HOM05D006594 ORTHO05D008383 2.0e-105 387.1 461 47.9
Lsat_1_v5_gn_0_29900 Lactuca sativa HOM05D006594 ORTHO05D008383 1.3e-104 384.4 469 46.9
Solyc03g026010.3 Solanum lycopersicum HOM05D006594 ORTHO05D008383 1.7e-104 384.0 469 46.5
Sopen03g004840 Solanum pennellii HOM05D006594 ORTHO05D008383 1.7e-104 384.0 469 46.5
CiPaw.03G104400 Carya illinoinensis HOM05D006594 ORTHO05D008383 5.0e-104 382.5 471 47.1
CAN.G856.1 Capsicum annuum HOM05D006594 ORTHO05D008383 2.5e-103 380.2 461 47.7
Cc02_g03190 Coffea canephora HOM05D006594 ORTHO05D008383 5.5e-103 379.0 474 46.0
TWI23G0502 Tripterygium wilfordii HOM05D006594 ORTHO05D008383 1.6e-102 377.5 473 45.9
MD07G1266600 Malus domestica HOM05D006594 ORTHO05D008383 3.6e-102 376.3 462 46.1
Eucgr.K00239 Eucalyptus grandis HOM05D006594 ORTHO05D008383 1.8e-101 374.0 474 46.2
MELO3C006892.2 Cucumis melo HOM05D006594 ORTHO05D008383 1.5e-100 370.9 470 43.8
Prupe.2G292200 Prunus persica HOM05D006594 ORTHO05D008383 2.0e-100 370.5 462 45.9
DCAR_009355 Daucus carota HOM05D006594 ORTHO05D008383 2.6e-100 370.2 469 45.6
HanXRQChr09g0253731 Helianthus annuus HOM05D006594 ORTHO05D008383 2.6e-100 370.2 462 46.8
CsaV3_3G016960 Cucumis sativus L. HOM05D006594 ORTHO05D008383 5.7e-100 369.0 471 44.2
AT5G52180 Arabidopsis thaliana HOM05D006594 ORTHO05D008383 2.8e-99 366.7 467 44.3
QL09p014600 Quercus lobata HOM05D006594 ORTHO05D008383 2.8e-99 366.7 472 44.3
Oeu022583.1 Olea europaea HOM05D006594 ORTHO05D008383 6.3e-99 365.5 471 43.7
RcHm_v2.0_Chr1g0376971 Rosa chinensis HOM05D006594 ORTHO05D008383 6.3e-99 365.5 460 45.4
PSO782G0556 Papaver somniferum HOM05D006594 ORTHO05D008383 8.3e-99 365.2 467 47.5
Ca_10784_v3 Cicer arietinum L. HOM05D006594 ORTHO05D008383 3.1e-98 363.2 472 45.3
ClCG05G007930 Citrullus lanatus HOM05D006594 ORTHO05D008383 9.1e-98 361.7 468 43.2
Sp6g14430 Schrenkiella parvula HOM05D006594 ORTHO05D008383 1.0e-96 358.2 466 43.3
AL8G26560 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 2.9e-96 356.7 464 43.5
Carub.0008s1227 Capsella rubella HOM05D006594 ORTHO05D008383 4.2e-95 352.8 464 43.5
Thhalv10013484m.g Eutrema salsugineum HOM05D006594 ORTHO05D008383 5.5e-95 352.4 470 43.4
Aa31LG3G8560 Aethionema arabicum HOM05D006594 ORTHO05D008383 9.4e-95 351.7 462 43.1
THA.LOC104825095 Tarenaya hassleriana HOM05D006594 ORTHO05D008383 1.6e-94 350.9 462 43.1
CARHR265100 Cardamine hirsuta HOM05D006594 ORTHO05D008383 4.7e-94 349.4 458 43.0
LjContig00238g0014067 Lotus japonicus HOM05D006594 ORTHO05D008383 1.0e-93 348.2 468 43.6
Manes.06G145800 Manihot esculenta HOM05D006594 ORTHO05D008383 1.0e-93 348.2 474 44.1
BcaC04g20605 Brassica carinata HOM05D006594 ORTHO05D008383 1.8e-93 347.4 458 43.4
C09p41600 Brassica napus HOM05D006594 ORTHO05D008383 1.8e-93 347.4 458 43.4
BolC9t57044H Brassica oleracea HOM05D006594 ORTHO05D008383 1.8e-93 347.4 458 43.4
PSO478G3258 Papaver somniferum HOM05D006594 ORTHO05D008383 2.3e-93 347.1 445 47.0
PGR142G0281 Punica granatum HOM05D006594 ORTHO05D008383 2.3e-93 347.1 471 44.2
BcaB08g35566 Brassica carinata HOM05D006594 ORTHO05D008383 3.0e-93 346.7 459 43.6
Psat6g200680 Pisum sativum HOM05D006594 ORTHO05D008383 2.6e-92 343.6 466 43.6
Haze_13736 Corylus avellana HOM05D006594 ORTHO05D008383 9.8e-92 341.7 471 41.8
Phvul.007G067900 Phaseolus vulgaris HOM05D006594 ORTHO05D008383 9.8e-92 341.7 467 44.5
Migut.F01134 Erythranthe guttata HOM05D006594 ORTHO05D008383 1.7e-91 340.9 467 42.8
BraA10t43068Z Brassica rapa HOM05D006594 ORTHO05D008383 2.2e-91 340.5 452 42.9
A10p09870 Brassica napus HOM05D006594 ORTHO05D008383 2.8e-91 340.1 452 42.5
SGA_v2.0_scaffold113G31757 Striga asiatica HOM05D006594 ORTHO05D008383 4.9e-91 339.3 456 43.2
Sed0005391 Sechium edule HOM05D006594 ORTHO05D008383 2.4e-90 337.0 414 45.7
Dinv28461 Davidia involucrata HOM05D006594 ORTHO05D008383 4.1e-90 336.3 435 47.1
Medtr1g100767 Medicago truncatula HOM05D006594 ORTHO05D008383 1.6e-89 334.3 472 43.9
FAN10G1161 Fragaria x ananassa HOM05D006594 ORTHO05D008383 1.3e-88 331.3 461 42.5
SalBow2G3298 Salvia bowleyana HOM05D006594 ORTHO05D008383 1.3e-88 331.3 447 43.2
FAN06G4553 Fragaria x ananassa HOM05D006594 ORTHO05D008383 1.7e-88 330.9 462 43.3
Glyma.20G156900 Glycine max HOM05D006594 ORTHO05D008383 1.7e-88 330.9 468 42.7
MSTRG.8446 Avicennia marina HOM05D006594 ORTHO05D008383 2.3e-88 330.5 470 42.8
Aqoxy7G00398 Aquilegia oxysepala HOM05D006594 ORTHO05D008383 2.9e-88 330.1 469 41.6
Glyma.10G237700 Glycine max HOM05D006594 ORTHO05D008383 3.8e-88 329.7 471 42.9
FAN06G0009 Fragaria x ananassa HOM05D006594 ORTHO05D008383 6.6e-88 328.9 462 43.1
GSVIVG01010594001 Vitis vinifera HOM05D006594 ORTHO05D008383 1.5e-87 327.8 444 44.8
FAN01G0792 Fragaria x ananassa HOM05D006594 ORTHO05D008383 7.2e-87 325.5 460 42.6
Lalb_Chr06g0161051 Lupinus albus HOM05D006594 ORTHO05D008383 2.6e-84 317.0 470 42.6
Gohir.A12G259700 Gossypium hirsutum HOM05D006594 ORTHO05D008383 3.0e-80 303.5 357 47.3
TAR374G1009 Trochodendron aralioides HOM05D006594 ORTHO05D008383 5.0e-80 302.8 381 45.4
Actinidia32874 Actinidia chinensis HOM05D006594 ORTHO05D008383 8.6e-80 302.0 424 42.9
FAN03G3172 Fragaria x ananassa HOM05D006594 ORTHO05D008383 1.9e-79 300.8 436 41.7
Rhsim03G0179000 Rhododendron simsii HOM05D006594 ORTHO05D008383 5.6e-79 299.3 418 44.0
Gorai.004G119800 Gossypium raimondii HOM05D006594 ORTHO05D008383 3.4e-76 290.0 421 40.9
CDE11G0822 Ceratophyllum demersum HOM05D006594 ORTHO05D008383 2.9e-75 287.0 464 36.9
vmacro06700 Vaccinium macrocarpon HOM05D006594 ORTHO05D008383 6.4e-75 285.8 420 41.7
TPR.G14337 Trifolium pratense HOM05D006594 ORTHO05D008383 3.0e-72 276.9 452 39.4
MBI12_g14429_MAGBIO Magnolia biondii HOM05D006594 ORTHO05D008383 2.1e-70 270.8 416 39.7
Thecc.03G173100 Theobroma cacao HOM05D006594 ORTHO05D008383 7.1e-66 255.8 262 50.4
arahy.Tifrunner.gnm1.ann1.MGJ2V1 Arachis hypogaea HOM05D006594 ORTHO05D008383 1.2e-65 255.0 416 39.2
arahy.Tifrunner.gnm1.ann1.GIF0V2 Arachis hypogaea HOM05D006594 ORTHO05D008383 2.1e-65 254.2 414 38.9
Gohir.A08G100500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 1.5e-63 248.1 337 43.3
ATR0757G038 Amborella trichopoda HOM05D006594 ORTHO05D008383 2.2e-59 234.2 593 29.8
Gohir.D08G112040 Gossypium hirsutum HOM05D006594 ORTHO05D008383 4.7e-54 216.5 411 36.0
A06p20700 Brassica napus HOM05D006594 ORTHO05D008383 5.4e-50 203.0 216 50.5
Nitab4.5_0001508g0080 Nicotiana tabacum HOM05D006594 ORTHO05D008383 1.0e-48 198.7 223 50.2
Lj1P995T25 Lonicera japonica HOM05D006594 ORTHO05D008383 8.1e-46 189.1 139 66.9
EL10Ac3g05712 Beta vulgaris HOM05D006594 ORTHO05D008383 2.4e-42 177.6 123 77.2
FvH4_7g29210 Fragaria vesca HOM05D006594 ORTHO05D008383 7.9e-41 172.6 269 40.1
SEGI_30493 Sequoiadendron giganteum HOM05D006594 ORTHO05D008383 1.3e-38 165.2 532 27.8
unitig_0.g463 Utricularia gibba HOM05D006594 ORTHO05D008383 3.1e-37 160.6 243 40.7
Nitab4.5_0000716g0260 Nicotiana tabacum HOM05D006594 ORTHO05D008383 1.3e-30 138.7 171 46.2
MD01G1198800 Malus domestica HOM05D006594 ORTHO05D008383 4.8e-30 136.7 428 27.6
AL1G10170 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 2.5e-26 124.4 98 64.3
Zm00001eb378500 Zea mays HOM05D006594 ORTHO05D008383 4.2e-26 123.6 441 29.0
arahy.Tifrunner.gnm1.ann1.J8117K Arachis hypogaea HOM05D006594 ORTHO05D008383 8.7e-24 115.9 183 36.6
unitig_0.g462 Utricularia gibba HOM05D006594 ORTHO05D008383 4.3e-23 113.6 156 42.9
Os06g0129000 Oryza sativa ssp. japonica HOM05D006594 ORTHO05D008383 5.7e-23 113.2 424 28.3
SMO116G0206 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 9.6e-23 112.5 477 25.4
arahy.Tifrunner.gnm1.ann1.A65ZGP Arachis hypogaea HOM05D006594 ORTHO05D008383 9.0e-21 105.9 147 42.9
Duzib068G0509 Durio zibethinus HOM05D006594 ORTHO05D008383 4.5e-20 103.6 180 36.7
Lj1E995T0 Lonicera japonica HOM05D006594 ORTHO05D008383 1.4e-18 98.6 149 41.6
Mapoly0061s0021 Marchantia polymorpha HOM05D006594 ORTHO05D008383 1.2e-17 95.5 508 21.9
Atru.chr1.484 Acer truncatum HOM05D006594 ORTHO05D008383 2.3e-16 91.3 121 47.9
arahy.Tifrunner.gnm1.ann1.PB1XHH Arachis hypogaea HOM05D006594 ORTHO05D008383 1.3e-14 85.5 226 27.4
EL10Ac2g03657 Beta vulgaris HOM05D000159 ORTHO05D002729 3.4e-12 77.4 64 67.2
SMO195G0004 Selaginella moellendorffii HOM05D025148 ORTHO05D050897 1.4e-10 72.0 122 36.1
VMungo0331G1728 Vigna mungo HOM05D006594 ORTHO05D008383 2.5e-10 71.2 158 35.4


User provided reference genes

Program Settings