Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g068190 Amaranthus hybridus HOM05D002479 ORTHO05D002675 1.5e-95 352.8 177 100.0
Ah.13g068130 Amaranthus hybridus HOM05D002479 ORTHO05D002675 9.7e-95 350.1 176 99.4
Ah.13g068150 Amaranthus hybridus HOM05D002479 ORTHO05D002675 9.7e-95 350.1 176 99.4
Ah.06g188680 Amaranthus hybridus HOM05D002479 ORTHO05D002675 4.5e-92 341.3 176 96.6
Ah.06g188690 Amaranthus hybridus HOM05D002479 ORTHO05D002675 1.6e-89 332.8 176 94.9
AUR62000543 Chenopodium quinoa HOM05D002479 ORTHO05D002675 2.1e-65 252.7 177 75.7
EL10Ac4g09674 Beta vulgaris HOM05D002479 ORTHO05D002675 6.4e-62 241.1 177 70.6
AUR62006894 Chenopodium quinoa HOM05D002479 ORTHO05D002675 1.9e-61 239.6 177 71.8
Dinv05730 Davidia involucrata HOM05D002479 ORTHO05D002675 6.2e-25 118.2 174 46.0
CSS0026566 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 3.1e-24 115.9 155 46.5
Potri.010G078900 Populus trichocarpa HOM05D002479 ORTHO05D002675 6.9e-24 114.8 175 46.3
CSS0032076 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 9.0e-24 114.4 155 45.8
Sc19g0003840 Simmondsia chinensis HOM05D002479 ORTHO05D002675 3.4e-23 112.5 185 42.2
Cfa008402 Carpinus fangiana HOM05D002479 ORTHO05D002675 1.3e-22 110.5 156 42.9
TAR365G0241 Trochodendron aralioides HOM05D002479 ORTHO05D002675 1.3e-22 110.5 185 42.7
COL.COLO4_15763 Corchorus olitorius HOM05D003117 ORTHO05D003612 6.5e-22 108.2 181 42.5
Sabra10G0064300 Salix brachista HOM05D002479 ORTHO05D002675 8.4e-22 107.8 177 42.9
GSVIVG01018090001 Vitis vinifera HOM05D002479 ORTHO05D002675 1.9e-21 106.7 179 42.5
Manes.15G035300 Manihot esculenta HOM05D002479 ORTHO05D002675 4.2e-21 105.5 176 40.9
Atru.chr4.2287 Acer truncatum HOM05D002479 ORTHO05D002675 5.5e-21 105.1 178 44.9
Actinidia06778 Actinidia chinensis HOM05D002479 ORTHO05D002675 5.5e-21 105.1 176 40.3
Haze_11266 Corylus avellana HOM05D002479 ORTHO05D002675 5.5e-21 105.1 156 41.7
Thecc.04G243400 Theobroma cacao HOM05D002479 ORTHO05D002675 9.3e-21 104.4 181 41.4
Duzib212G0327 Durio zibethinus HOM05D002479 ORTHO05D002675 2.7e-20 102.8 175 41.7
CANSAT78G2316 Cannabis sativa HOM05D002479 ORTHO05D002675 6.0e-20 101.7 157 42.0
QL06p014970 Quercus lobata HOM05D002479 ORTHO05D002675 7.9e-20 101.3 185 40.0
Gohir.A09G221700 Gossypium hirsutum HOM05D002479 ORTHO05D002675 1.0e-19 100.9 179 40.8
Gohir.D09G223800 Gossypium hirsutum HOM05D002479 ORTHO05D002675 1.0e-19 100.9 179 40.8
Gorai.006G245300 Gossypium raimondii HOM05D002479 ORTHO05D002675 1.3e-19 100.5 179 40.8
ClCG01G020210 Citrullus lanatus HOM05D002479 ORTHO05D002675 5.1e-19 98.6 181 39.2
Actinidia07832 Actinidia chinensis HOM05D002479 ORTHO05D002675 6.7e-19 98.2 69 66.7
PGR004G1668 Punica granatum HOM05D002479 ORTHO05D002675 1.1e-18 97.4 179 39.7
FAN12G1103 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.5e-18 97.1 128 46.9
CsaV3_4G030850 Cucumis sativus L. HOM05D002479 ORTHO05D002675 1.9e-18 96.7 179 38.5
FAN17G1196 Fragaria x ananassa HOM05D002479 ORTHO05D002675 2.5e-18 96.3 128 46.1
FAN22G0099 Fragaria x ananassa HOM05D002479 ORTHO05D002675 2.5e-18 96.3 128 46.1
Eucgr.D00099 Eucalyptus grandis HOM05D002479 ORTHO05D002675 3.3e-18 95.9 96 52.1
FvH4_4g02020 Fragaria vesca HOM05D002479 ORTHO05D002675 4.3e-18 95.5 128 46.1
Sed0003943 Sechium edule HOM05D002479 ORTHO05D002675 4.3e-18 95.5 154 40.3
MELO3C014273.2 Cucumis melo HOM05D002479 ORTHO05D002675 9.6e-18 94.4 179 38.0
RcHm_v2.0_Chr4g0388991 Rosa chinensis HOM05D002479 ORTHO05D002675 9.6e-18 94.4 132 45.5
CiPaw.01G192700 Carya illinoinensis HOM05D002479 ORTHO05D002675 1.6e-17 93.6 159 39.0
Prupe.1G026500 Prunus persica HOM05D002479 ORTHO05D002675 1.6e-17 93.6 194 37.6
Rhsim05G0175800 Rhododendron simsii HOM05D002479 ORTHO05D002675 3.7e-17 92.4 181 40.3
MD13G1203500 Malus domestica HOM05D002479 ORTHO05D002675 6.2e-17 91.7 155 41.3
Phvul.007G135000 Phaseolus vulgaris HOM05D002479 ORTHO05D002675 8.2e-17 91.3 110 49.1
VMungo0720G1235 Vigna mungo HOM05D002479 ORTHO05D002675 1.4e-16 90.5 69 62.3
TWI09G1194 Tripterygium wilfordii HOM05D002479 ORTHO05D002675 1.8e-16 90.1 149 38.3
Lalb_Chr01g0020831 Lupinus albus HOM05D002479 ORTHO05D002675 2.4e-16 89.7 56 69.6
Nitab4.5_0007585g0010 Nicotiana tabacum HOM05D002479 ORTHO05D002675 2.4e-16 89.7 56 69.6
Ciclev10004292m.g Citrus clementina HOM05D002479 ORTHO05D002675 3.1e-16 89.4 188 39.4
arahy.Tifrunner.gnm1.ann1.SV1H5N Arachis hypogaea HOM05D002479 ORTHO05D002675 4.1e-16 89.0 136 44.9
Ca_12209_v3 Cicer arietinum L. HOM05D002479 ORTHO05D002675 4.1e-16 89.0 110 48.2
Nn1g02530 Nelumbo nucifera HOM05D002479 ORTHO05D002675 4.1e-16 89.0 183 38.8
arahy.Tifrunner.gnm1.ann1.4S02NL Arachis hypogaea HOM05D000001 ORTHO05D009083 6.9e-16 88.2 136 44.1
Glyma.10G193100 Glycine max HOM05D002479 ORTHO05D002675 6.9e-16 88.2 116 47.4
Lj6g0009664 Lotus japonicus HOM05D002479 ORTHO05D002675 9.0e-16 87.8 111 46.8
Migut.N00231 Erythranthe guttata HOM05D002479 ORTHO05D002675 1.2e-15 87.4 78 56.4
Lju1074C3T5 Lonicera japonica HOM05D002479 ORTHO05D002675 1.2e-15 87.4 142 41.5
ECA233G5632 Erigeron canadensis HOM05D003117 ORTHO05D003612 1.5e-15 87.0 68 63.2
SGA_v2.0_scaffold79G25620 Striga asiatica HOM05D002479 ORTHO05D002675 1.5e-15 87.0 54 66.7
Nitab4.5_0001856g0030 Nicotiana tabacum HOM05D003117 ORTHO05D003612 2.6e-15 86.3 99 46.5
CARHR098950 Cardamine hirsuta HOM05D002479 ORTHO05D002675 3.4e-15 85.9 148 39.2
Ca_10409_v3 Cicer arietinum L. HOM05D002479 ORTHO05D002675 5.8e-15 85.1 81 55.6
Lalb_Chr21g0312681 Lupinus albus HOM05D002479 ORTHO05D002675 5.8e-15 85.1 78 53.8
Glyma.20G197300 Glycine max HOM05D002479 ORTHO05D002675 1.0e-14 84.3 60 66.7
Psat6g170520 Pisum sativum HOM05D002479 ORTHO05D002675 1.0e-14 84.3 90 53.3
MBI11_g15907_MAGBIO Magnolia biondii HOM05D002479 ORTHO05D002675 1.7e-14 83.6 145 41.4
Aa31LG8G9510 Aethionema arabicum HOM05D002479 ORTHO05D002675 2.9e-14 82.8 146 40.4
Carub.0003s2318 Capsella rubella HOM05D002479 ORTHO05D002675 3.8e-14 82.4 161 37.3
Medtr1g090120 Medicago truncatula HOM05D002479 ORTHO05D002675 3.8e-14 82.4 102 47.1
PSO170G3719 Papaver somniferum HOM05D002479 ORTHO05D002675 3.8e-14 82.4 156 41.7
AL3G37450 Arabidopsis lyrata HOM05D002479 ORTHO05D002675 5.0e-14 82.0 162 39.5
A05p25680 Brassica napus HOM05D002479 ORTHO05D002675 5.0e-14 82.0 159 37.1
HanXRQChr06g0184931 Helianthus annuus HOM05D002479 ORTHO05D002675 5.0e-14 82.0 165 37.6
C05p39950 Brassica napus HOM05D002479 ORTHO05D002675 6.5e-14 81.6 159 36.5
BolC5t32740H Brassica oleracea HOM05D002479 ORTHO05D002675 6.5e-14 81.6 159 36.5
Thhalv10020060m.g Eutrema salsugineum HOM05D002479 ORTHO05D002675 8.4e-14 81.3 53 67.9
BcaC05g27986 Brassica carinata HOM05D002479 ORTHO05D002675 1.4e-13 80.5 159 35.8
BraA05t21449Z Brassica rapa HOM05D002479 ORTHO05D002675 1.9e-13 80.1 159 36.5
BcaB06g26423 Brassica carinata HOM05D002479 ORTHO05D002675 2.5e-13 79.7 58 63.8
PSO528G0065 Papaver somniferum HOM05D002479 ORTHO05D002675 3.2e-13 79.3 166 34.9
ATR0665G174 Amborella trichopoda HOM05D002479 ORTHO05D002675 4.2e-13 79.0 126 37.3
MSTRG.24708 Avicennia marina HOM05D002479 ORTHO05D002675 4.2e-13 79.0 100 42.0
CAN.G749.33 Capsicum annuum HOM05D002479 ORTHO05D002675 4.2e-13 79.0 50 68.0
Lj5g0026763 Lotus japonicus HOM05D002479 ORTHO05D002675 4.2e-13 79.0 103 43.7
Solyc09g083110.3 Solanum lycopersicum HOM05D002479 ORTHO05D002675 4.2e-13 79.0 55 63.6
Sopen09g031990 Solanum pennellii HOM05D002479 ORTHO05D002675 4.2e-13 79.0 55 63.6
Sp3g20700 Schrenkiella parvula HOM05D002479 ORTHO05D002675 5.5e-13 78.6 59 61.0
THA.LOC104808589 Tarenaya hassleriana HOM05D002479 ORTHO05D002675 5.5e-13 78.6 53 64.2
HanXRQChr14g0428761 Helianthus annuus HOM05D002479 ORTHO05D002675 1.2e-12 77.4 45 77.8
AT3G23020 Arabidopsis thaliana HOM05D002479 ORTHO05D002675 1.6e-12 77.0 166 34.9
PGSC0003DMG400006105 Solanum tuberosum HOM05D002479 ORTHO05D002675 2.1e-12 76.6 55 61.8
TPR.G22484 Trifolium pratense HOM05D002479 ORTHO05D002675 2.1e-12 76.6 109 41.3
arahy.Tifrunner.gnm1.ann1.48HMV1 Arachis hypogaea HOM05D002479 ORTHO05D002675 4.6e-12 75.5 55 63.6
Peaxi162Scf00788g00034 Petunia axillaris HOM05D002479 ORTHO05D002675 4.6e-12 75.5 53 62.3
Aqoxy2G03503 Aquilegia oxysepala HOM05D002479 ORTHO05D002675 1.0e-11 74.3 56 60.7
Lsat_1_v5_gn_5_67920 Lactuca sativa HOM05D002479 ORTHO05D002675 1.0e-11 74.3 155 34.8
CDE06G1847 Ceratophyllum demersum HOM05D001346 ORTHO05D001205 1.3e-11 73.9 49 69.4
VMungo0720G1484 Vigna mungo HOM05D002479 ORTHO05D002675 1.3e-11 73.9 108 42.6
Medtr1g040765 Medicago truncatula HOM05D002479 ORTHO05D002675 3.9e-11 72.4 108 40.7
vmacro20006 Vaccinium macrocarpon HOM05D002479 ORTHO05D002675 5.1e-11 72.0 101 42.6
Medtr1g040725 Medicago truncatula HOM05D003117 ORTHO05D003612 3.3e-10 69.3 96 43.8
Medtr5g042370 Medicago truncatula HOM05D002479 ORTHO05D002675 3.3e-10 69.3 108 40.7
Glyma.10G001500 Glycine max HOM05D002479 ORTHO05D002675 4.3e-10 68.9 61 54.1
AL57U10010 Arabidopsis lyrata HOM05D002479 ORTHO05D002675 1.3e-09 67.4 161 36.6
Phvul.006G222000 Phaseolus vulgaris HOM05D002479 ORTHO05D002675 1.3e-09 67.4 56 57.1
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 2.2e-09 66.6 87 42.5
Os03g0162900 Oryza sativa ssp. japonica HOM05D002479 ORTHO05D002675 3.7e-09 65.9 49 57.1
ATR0693G368 Amborella trichopoda HOM05D002479 ORTHO05D002675 4.1e-08 62.4 41 65.9
DCAR_005281 Daucus carota HOM05D002479 ORTHO05D002675 9.0e-08 61.2 182 30.8
SEGI_37914 Sequoiadendron giganteum HOM05D002479 ORTHO05D002675 3.8e-06 55.8 76 40.8


User provided reference genes

Program Settings