Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.0e-90 336.7 161 100.0
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.3e-77 293.1 145 95.9
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 1.2e-72 276.6 157 83.4
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 1.1e-71 273.5 157 82.2
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 2.4e-71 272.3 157 80.9
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 1.7e-69 266.2 157 79.6
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 2.2e-69 265.8 144 81.9
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 1.4e-68 263.1 163 75.5
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 1.9e-68 262.7 144 82.6
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 1.9e-68 262.7 163 76.7
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 2.4e-68 262.3 142 82.4
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 3.2e-68 261.9 163 76.1
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 4.1e-68 261.5 144 82.6
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 4.1e-68 261.5 142 82.4
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 4.1e-68 261.5 163 76.1
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 5.4e-68 261.2 144 82.6
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 5.4e-68 261.2 144 82.6
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 5.4e-68 261.2 163 75.5
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 7.1e-68 260.8 144 84.0
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 7.1e-68 260.8 144 82.6
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 9.2e-68 260.4 163 74.8
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 1.2e-67 260.0 163 74.8
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 1.6e-67 259.6 144 83.3
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 1.6e-67 259.6 144 83.3
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 2.1e-67 259.2 144 81.9
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 2.7e-67 258.8 163 73.6
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 2.7e-67 258.8 144 83.3
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 3.5e-67 258.5 155 76.8
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 4.6e-67 258.1 163 74.2
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 6.0e-67 257.7 124 99.2
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 6.0e-67 257.7 144 79.9
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 6.0e-67 257.7 143 81.1
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 7.8e-67 257.3 144 81.2
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 7.8e-67 257.3 144 81.2
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 7.8e-67 257.3 143 82.5
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 1.0e-66 256.9 144 80.6
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 1.3e-66 256.5 144 81.9
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 1.7e-66 256.1 144 80.6
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 3.9e-66 255.0 144 81.2
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 5.1e-66 254.6 158 75.3
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 8.6e-66 253.8 144 78.5
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 1.1e-65 253.4 163 73.0
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 1.5e-65 253.1 163 71.8
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 1.9e-65 252.7 163 72.4
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 2.5e-65 252.3 144 80.6
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 3.3e-65 251.9 163 71.8
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 7.3e-65 250.8 163 72.4
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 9.6e-65 250.4 144 78.5
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 9.6e-65 250.4 144 77.8
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.2e-64 250.0 144 79.9
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 1.6e-64 249.6 143 77.6
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 2.1e-64 249.2 160 73.8
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 2.8e-64 248.8 152 74.3
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 3.6e-64 248.4 160 73.1
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 3.6e-64 248.4 160 73.1
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 4.7e-64 248.1 163 71.8
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 4.7e-64 248.1 144 77.1
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 4.7e-64 248.1 143 76.2
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 6.2e-64 247.7 160 73.1
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 6.2e-64 247.7 139 80.6
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 1.1e-63 246.9 143 78.3
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 1.1e-63 246.9 159 70.4
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 1.1e-63 246.9 155 74.8
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 1.4e-63 246.5 144 75.7
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 1.8e-63 246.1 147 74.8
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 4.0e-63 245.0 163 71.2
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 9.0e-63 243.8 159 70.4
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 9.0e-63 243.8 160 71.2
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 1.2e-62 243.4 143 77.6
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 1.5e-62 243.0 144 75.0
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 2.0e-62 242.7 144 75.7
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 3.4e-62 241.9 144 76.4
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 4.4e-62 241.5 144 74.3
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 5.8e-62 241.1 143 74.8
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 9.9e-62 240.4 144 74.3
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 9.9e-62 240.4 144 74.3
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 9.9e-62 240.4 144 74.3
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 9.9e-62 240.4 144 74.3
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 1.7e-61 239.6 151 70.9
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 2.2e-61 239.2 144 74.3
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 2.2e-61 239.2 144 74.3
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 2.9e-61 238.8 143 74.8
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 3.8e-61 238.4 159 67.9
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 3.8e-61 238.4 139 74.8
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 3.8e-61 238.4 143 73.4
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 4.9e-61 238.0 160 70.0
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 4.9e-61 238.0 142 73.9
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 6.4e-61 237.7 144 72.2
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 8.4e-61 237.3 147 72.8
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 1.9e-60 236.1 144 72.9
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 1.9e-60 236.1 144 72.2
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 1.9e-60 236.1 144 72.2
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 1.9e-60 236.1 145 72.4
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 1.9e-60 236.1 145 72.4
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 3.2e-60 235.3 142 74.6
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 4.2e-60 235.0 137 75.2
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 5.4e-60 234.6 144 72.2
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 7.1e-60 234.2 144 72.2
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 2.1e-59 232.6 142 73.9
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 6.6e-58 227.6 151 68.2
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 8.7e-58 227.3 144 73.6
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 1.5e-57 226.5 133 76.7
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 1.9e-57 226.1 146 70.5
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 4.3e-57 224.9 139 71.9
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 2.1e-56 222.6 157 66.9
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 3.6e-56 221.9 136 72.8
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 5.3e-55 218.0 140 71.4
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 1.2e-54 216.9 163 62.0
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 1.2e-54 216.9 160 62.5
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 1.5e-54 216.5 137 71.5
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 1.5e-54 216.5 139 69.8
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 2.9e-53 212.2 143 67.1
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 1.4e-52 209.9 157 63.1
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 4.2e-52 208.4 143 70.6
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 2.7e-51 205.7 109 86.2
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 3.8e-45 185.3 144 62.5
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 7.1e-44 181.0 139 58.3
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 2.1e-43 179.5 139 58.3
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 3.5e-43 178.7 123 68.3
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.5e-41 173.3 124 64.5
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 1.4e-39 166.8 123 61.8
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 4.5e-38 161.8 103 70.9
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 3.8e-37 158.7 143 58.0
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 9.3e-36 154.1 125 59.2
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.6e-35 153.3 144 52.1
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 2.8e-32 142.5 88 73.9
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 2.4e-31 139.4 144 47.9
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 2.0e-30 136.3 144 46.5
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 1.3e-29 133.7 90 67.8
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 2.2e-29 132.9 143 47.6
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 5.0e-29 131.7 156 48.1
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 8.5e-29 131.0 156 48.1
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 6.1e-27 124.8 140 45.7
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 1.8e-26 123.2 125 52.8
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 3.0e-26 122.5 145 42.1
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 9.7e-25 117.5 67 83.6
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 4.7e-19 98.6 120 42.5
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 4.1e-15 85.5 62 62.9
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 4.2e-12 75.5 53 62.3
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 1.6e-11 73.6 62 59.7
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 2.1e-11 73.2 120 35.8
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 6.7e-10 68.2 58 55.2
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 2.0e-09 66.6 48 60.4
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 4.8e-08 62.0 45 64.4
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 1.2e-06 57.4 46 54.3


User provided reference genes

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