Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 2.7e-82 308.5 148 100.0
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 2.0e-77 292.4 145 95.9
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 2.4e-70 268.9 140 87.1
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 4.1e-70 268.1 140 87.9
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 9.1e-70 266.9 140 87.1
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.3e-68 263.1 147 80.3
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 1.3e-68 263.1 140 82.9
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 1.7e-68 262.7 139 84.9
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 2.2e-68 262.3 147 80.3
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 2.2e-68 262.3 139 84.9
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 5.0e-68 261.2 140 85.0
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 1.1e-67 260.0 139 84.2
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 1.4e-67 259.6 139 84.2
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 1.4e-67 259.6 139 84.2
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 1.4e-67 259.6 139 84.9
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 1.9e-67 259.2 139 84.2
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 2.5e-67 258.8 148 79.7
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 2.5e-67 258.8 140 83.6
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 3.2e-67 258.5 139 82.7
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 4.2e-67 258.1 124 99.2
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 4.2e-67 258.1 139 83.5
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 4.2e-67 258.1 139 84.2
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 5.5e-67 257.7 139 84.2
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 7.2e-67 257.3 139 84.9
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 7.2e-67 257.3 139 82.7
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 9.4e-67 256.9 139 82.7
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 9.4e-67 256.9 140 82.1
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 1.2e-66 256.5 148 77.0
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 1.6e-66 256.1 138 82.6
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 2.1e-66 255.8 139 82.7
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 2.1e-66 255.8 139 82.7
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 2.7e-66 255.4 139 84.2
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 3.6e-66 255.0 139 83.5
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 3.6e-66 255.0 139 82.0
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 4.7e-66 254.6 139 82.0
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 4.7e-66 254.6 139 84.2
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 4.7e-66 254.6 139 84.2
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 8.0e-66 253.8 138 83.3
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.0e-65 253.4 139 82.7
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 1.8e-65 252.7 139 81.3
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 3.9e-65 251.5 139 80.6
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 5.2e-65 251.1 148 77.0
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 6.7e-65 250.8 139 80.6
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 6.7e-65 250.8 139 82.0
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 6.7e-65 250.8 139 79.9
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 8.8e-65 250.4 139 79.1
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.1e-64 250.0 139 82.0
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 1.1e-64 250.0 139 80.6
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 1.5e-64 249.6 139 80.6
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 2.0e-64 249.2 138 79.7
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 2.6e-64 248.8 139 80.6
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 3.3e-64 248.4 139 79.1
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 3.3e-64 248.4 139 79.9
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 3.3e-64 248.4 139 79.1
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 5.7e-64 247.7 138 78.3
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 7.4e-64 247.3 139 79.9
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 9.7e-64 246.9 139 79.9
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 1.7e-63 246.1 139 79.1
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 1.7e-63 246.1 139 79.1
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 2.2e-63 245.7 139 79.1
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 2.2e-63 245.7 139 80.6
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 2.8e-63 245.4 139 79.1
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 3.7e-63 245.0 139 77.0
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 4.8e-63 244.6 148 76.4
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 4.8e-63 244.6 139 77.7
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 8.2e-63 243.8 135 78.5
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 1.1e-62 243.4 139 79.1
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 2.4e-62 242.3 139 78.4
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 2.4e-62 242.3 139 77.7
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 4.1e-62 241.5 139 76.3
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 5.3e-62 241.1 139 77.0
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 9.1e-62 240.4 138 76.1
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 1.2e-61 240.0 139 75.5
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 2.0e-61 239.2 139 75.5
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 2.6e-61 238.8 139 75.5
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 2.6e-61 238.8 139 75.5
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 2.6e-61 238.8 139 75.5
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 2.6e-61 238.8 139 75.5
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 5.9e-61 237.7 139 75.5
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 5.9e-61 237.7 138 74.6
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 5.9e-61 237.7 139 75.5
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 5.9e-61 237.7 139 74.1
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 7.7e-61 237.3 139 76.3
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 7.7e-61 237.3 139 74.1
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 7.7e-61 237.3 139 74.1
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.0e-60 236.9 139 75.5
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 1.0e-60 236.9 138 75.4
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 1.3e-60 236.5 139 76.3
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.3e-60 236.5 139 74.1
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 5.0e-60 234.6 139 74.1
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 5.0e-60 234.6 139 73.4
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 5.0e-60 234.6 139 73.4
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 8.5e-60 233.8 145 71.7
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 8.5e-60 233.8 145 71.7
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 1.1e-59 233.4 134 77.6
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 1.5e-59 233.0 139 73.4
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.5e-59 233.0 134 75.4
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 1.9e-59 232.6 139 73.4
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 7.2e-59 230.7 138 74.6
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 2.7e-58 228.8 148 69.6
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 8.0e-58 227.3 133 76.7
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 1.8e-57 226.1 139 71.9
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 3.0e-57 225.3 139 74.8
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 8.8e-57 223.8 139 72.7
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 1.5e-56 223.0 136 72.8
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 2.6e-56 222.2 140 72.9
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 2.2e-55 219.2 140 71.4
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 6.3e-55 217.6 139 69.8
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 8.2e-55 217.2 137 71.5
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 1.4e-54 216.5 134 73.1
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 1.8e-54 216.1 139 69.8
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 2.7e-53 212.2 139 68.3
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 1.0e-52 210.3 136 70.6
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 8.5e-52 207.2 139 71.2
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 9.4e-51 203.8 109 85.3
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 1.3e-44 183.3 139 63.3
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 2.3e-44 182.6 139 59.0
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 6.5e-44 181.0 139 59.0
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 2.5e-43 179.1 123 68.3
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.0e-41 173.7 124 64.5
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 9.8e-40 167.2 123 61.8
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 1.8e-38 162.9 103 72.8
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 2.0e-37 159.5 139 59.7
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 5.0e-36 154.8 125 59.2
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.5e-35 153.3 140 53.6
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 1.7e-31 139.8 83 75.9
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 2.2e-31 139.4 140 49.3
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 1.9e-30 136.3 140 47.9
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 9.2e-30 134.0 90 67.8
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 1.2e-29 133.7 139 48.9
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 3.5e-29 132.1 152 48.7
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 6.0e-29 131.3 152 48.7
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 5.6e-27 124.8 140 46.4
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 7.3e-27 124.4 125 53.6
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 1.6e-26 123.2 141 43.3
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 5.2e-25 118.2 67 83.6
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 4.7e-18 95.1 115 41.7
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 2.4e-14 82.8 57 64.9
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 2.3e-12 76.3 53 62.3
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 6.6e-12 74.7 62 62.9
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 2.1e-10 69.7 115 34.8
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.1e-09 67.4 58 53.4
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 3.1e-09 65.9 48 58.3
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 2.0e-08 63.2 45 66.7
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 1.9e-06 56.6 46 52.2


User provided reference genes

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