Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 0.0e+00 1784.6 953 100.0
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 0.0e+00 1274.6 982 71.5
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 0.0e+00 1192.9 982 66.1
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 0.0e+00 1180.6 988 65.2
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 0.0e+00 1132.1 777 75.0
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 2.2e-262 909.4 885 54.6
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 3.0e-259 899.0 958 52.4
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 4.0e-259 898.7 1000 50.9
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 8.8e-259 897.5 1001 50.4
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 1.2e-258 897.1 900 54.4
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 3.4e-258 895.6 990 50.5
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 2.4e-256 889.4 876 55.6
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 4.1e-256 888.6 882 54.9
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 4.1e-256 888.6 886 55.4
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 2.7e-255 885.9 880 53.8
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 2.7e-255 885.9 878 55.0
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 3.5e-255 885.6 885 54.0
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 1.3e-254 883.6 873 53.6
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 1.7e-254 883.2 957 52.6
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 1.7e-254 883.2 991 50.8
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 6.5e-254 881.3 1022 50.4
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 1.9e-253 879.8 1026 49.2
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 4.2e-253 878.6 913 53.0
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 6.1e-252 874.8 892 54.9
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 1.0e-251 874.0 872 53.9
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 2.0e-250 869.8 997 52.6
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 1.7e-249 866.7 893 53.8
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 2.8e-249 865.9 961 51.4
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 1.4e-248 863.6 954 51.2
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 1.8e-248 863.2 893 52.2
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 9.2e-248 860.9 886 53.2
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 1.2e-247 860.5 1008 49.0
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 1.6e-247 860.1 886 51.9
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 2.0e-247 859.8 1018 50.3
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 3.5e-247 859.0 858 53.4
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 5.0e-246 855.1 815 56.1
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 6.6e-246 854.7 1036 48.1
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 8.6e-246 854.4 903 52.8
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 4.3e-245 852.0 958 51.7
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 7.3e-245 851.3 884 52.9
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 3.6e-244 849.0 884 52.8
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 6.1e-244 848.2 888 53.6
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 1.8e-240 836.6 875 52.2
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 1.2e-239 833.9 1006 50.5
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 1.0e-238 830.9 881 51.2
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 2.3e-238 829.7 965 49.2
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 3.0e-238 829.3 875 52.5
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 3.9e-238 828.9 880 53.4
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 5.0e-238 828.6 882 51.6
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.9e-237 826.6 975 49.1
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 2.5e-237 826.2 975 49.0
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.6e-236 823.5 975 48.7
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 4.7e-236 822.0 883 51.5
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 6.2e-236 821.6 870 53.1
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 3.1e-235 819.3 875 53.3
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 3.4e-234 815.8 965 48.6
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 8.3e-233 811.2 896 51.9
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 1.9e-232 810.1 876 51.6
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 3.2e-232 809.3 861 52.4
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 3.2e-232 809.3 985 49.9
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 4.1e-232 808.9 873 51.3
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 2.0e-231 806.6 846 52.2
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 2.7e-231 806.2 846 52.5
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 1.3e-230 803.9 846 52.4
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 2.3e-230 803.1 887 51.1
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 2.3e-230 803.1 884 52.0
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 1.1e-229 800.8 886 50.9
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 1.1e-227 794.3 872 53.8
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 8.9e-227 791.2 859 50.9
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 1.1e-224 784.3 828 51.9
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 4.6e-223 778.9 867 50.9
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 6.6e-222 775.0 872 48.7
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 7.3e-221 771.5 981 47.3
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 1.4e-219 767.3 636 62.3
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 2.6e-218 763.1 869 49.7
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 3.4e-218 762.7 870 50.8
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 7.8e-215 751.5 982 46.5
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 2.5e-213 746.5 869 50.3
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 7.3e-213 745.0 878 48.2
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 1.2e-212 744.2 973 46.1
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 1.6e-212 743.8 878 48.5
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 1.6e-212 743.8 878 48.5
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 1.4e-211 740.7 970 46.1
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 6.9e-211 738.4 974 47.0
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 1.2e-210 737.6 882 48.2
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 2.2e-209 733.4 882 48.1
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 4.9e-209 732.3 977 47.5
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 1.4e-208 730.7 1007 46.5
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 2.4e-208 729.9 882 48.2
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 2.4e-208 729.9 882 48.2
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 1.6e-207 727.2 992 45.3
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 2.1e-207 726.9 874 46.9
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 1.3e-204 717.6 876 47.3
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 2.1e-204 716.8 870 47.5
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 1.4e-203 714.1 878 46.8
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 9.0e-203 711.4 858 46.0
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 1.1e-197 694.5 882 46.4
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.1e-195 688.0 792 49.2
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 3.5e-191 672.9 736 51.2
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 2.6e-186 656.8 1030 40.5
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 6.5e-169 599.0 613 50.7
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 9.7e-165 585.1 574 52.3
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 7.7e-162 575.5 573 52.9
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 6.1e-159 565.8 566 53.7
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 1.8e-126 458.0 554 48.0
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 6.6e-121 439.5 497 49.1
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 1.3e-113 415.2 397 52.6
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 1.2e-103 382.1 409 47.9
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 9.3e-91 339.3 327 55.4
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 1.7e-68 265.4 305 52.5
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 4.2e-67 260.8 333 44.7
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 1.7e-52 212.2 346 36.7
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 1.4e-43 182.6 138 67.4
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 1.4e-43 182.6 138 67.4
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 1.2e-42 179.5 369 30.4
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 4.0e-33 147.9 470 28.1
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 4.0e-33 147.9 470 28.1
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 8.8e-33 146.7 400 30.0
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 2.6e-32 145.2 400 29.2
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 2.7e-29 135.2 210 42.4
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 5.0e-28 131.0 428 28.3
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 8.0e-26 123.6 339 26.3
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 2.0e-24 119.0 511 25.6
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 7.0e-14 84.0 54 75.9
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 5.9e-13 80.9 536 23.5
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 2.3e-12 79.0 514 22.8
CDE08G0941 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 3.1e-09 68.6 91 46.2
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 3.1e-09 68.6 192 28.1
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 8.9e-09 67.0 159 31.4
AagrBONN_evm.TU.Sc2ySwM_117.2839 Anthoceros agrestis HOM05D002537 ORTHO05D006869 1.1e-06 60.1 93 32.3
SMO351G0173 Selaginella moellendorffii HOM05D002537 ORTHO05D002751 5.4e-06 57.8 78 38.5


User provided reference genes

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