Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 8.3e-60 233.8 145 100.0
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 1.6e-31 139.8 98 72.4
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 1.8e-30 136.3 101 64.4
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 1.3e-28 130.2 97 69.1
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 3.8e-28 128.6 97 63.9
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 4.9e-28 128.3 95 69.5
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 8.4e-28 127.5 99 66.7
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 8.4e-28 127.5 103 66.0
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 1.4e-27 126.7 103 64.1
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 1.4e-27 126.7 99 67.7
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 1.9e-27 126.3 101 67.3
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 2.4e-27 125.9 99 66.7
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 2.4e-27 125.9 95 67.4
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 3.2e-27 125.6 103 63.1
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 4.2e-27 125.2 93 62.4
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 4.2e-27 125.2 105 64.8
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 5.5e-27 124.8 97 61.9
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 7.1e-27 124.4 101 67.3
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 7.1e-27 124.4 95 66.3
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 9.3e-27 124.0 99 62.6
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 1.2e-26 123.6 102 64.7
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 1.2e-26 123.6 99 65.7
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 1.6e-26 123.2 94 62.8
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 1.6e-26 123.2 96 66.7
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 1.6e-26 123.2 97 66.0
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 1.6e-26 123.2 97 66.0
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 2.1e-26 122.9 95 66.3
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 3.5e-26 122.1 99 63.6
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 3.5e-26 122.1 136 52.2
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 4.6e-26 121.7 101 62.4
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 4.6e-26 121.7 99 62.6
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 4.6e-26 121.7 99 59.6
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 6.0e-26 121.3 100 66.0
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 6.0e-26 121.3 96 61.5
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 7.9e-26 120.9 103 59.2
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 7.9e-26 120.9 98 63.3
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 1.0e-25 120.6 103 64.1
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.3e-25 120.2 100 62.0
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 1.3e-25 120.2 102 59.8
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 1.3e-25 120.2 87 69.0
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.8e-25 119.8 99 62.6
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 1.8e-25 119.8 101 64.4
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 1.8e-25 119.8 93 65.6
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 3.0e-25 119.0 102 60.8
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 3.0e-25 119.0 78 71.8
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 3.9e-25 118.6 99 61.6
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 3.9e-25 118.6 129 50.4
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 3.9e-25 118.6 99 62.6
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 6.7e-25 117.9 134 58.2
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 8.7e-25 117.5 98 62.2
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 1.1e-24 117.1 99 58.6
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 1.5e-24 116.7 99 61.6
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 1.5e-24 116.7 137 50.4
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 1.5e-24 116.7 95 62.1
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 1.9e-24 116.3 98 60.2
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 1.9e-24 116.3 99 61.6
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 2.5e-24 115.9 97 61.9
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 3.3e-24 115.5 102 60.8
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 3.3e-24 115.5 100 59.0
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 4.3e-24 115.2 127 51.2
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 4.3e-24 115.2 99 61.6
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 5.6e-24 114.8 104 60.6
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 7.4e-24 114.4 100 63.0
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 7.4e-24 114.4 95 62.1
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 7.4e-24 114.4 98 60.2
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 9.6e-24 114.0 95 57.9
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 1.3e-23 113.6 103 56.3
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 2.1e-23 112.8 102 55.9
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 2.8e-23 112.5 98 60.2
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 2.8e-23 112.5 95 61.1
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 2.8e-23 112.5 101 57.4
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 1.1e-22 110.5 111 54.1
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 1.4e-22 110.2 101 57.4
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 1.8e-22 109.8 88 61.4
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 1.8e-22 109.8 97 60.8
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 1.8e-22 109.8 92 60.9
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 3.1e-22 109.0 96 61.5
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 3.1e-22 109.0 99 59.6
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 3.1e-22 109.0 99 59.6
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 4.0e-22 108.6 95 60.0
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 6.9e-22 107.8 93 59.1
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 9.0e-22 107.5 93 59.1
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 1.5e-21 106.7 101 56.4
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 1.5e-21 106.7 104 54.8
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 2.0e-21 106.3 102 54.9
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 3.4e-21 105.5 103 51.5
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 1.0e-20 104.0 103 56.3
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 1.3e-20 103.6 104 57.7
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 1.3e-20 103.6 104 56.7
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 4.9e-20 101.7 94 52.1
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 8.4e-20 100.9 97 54.6
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 1.1e-19 100.5 80 67.5
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 2.5e-19 99.4 78 61.5
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 3.2e-19 99.0 98 54.1
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 3.2e-19 99.0 103 54.4
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 4.2e-19 98.6 102 50.0
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 1.6e-18 96.7 105 54.3
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 7.9e-18 94.4 96 55.2
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 1.8e-17 93.2 98 57.1
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 1.8e-17 93.2 104 52.9
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 2.3e-17 92.8 96 55.2
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 1.9e-16 89.7 74 55.4
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 3.3e-16 89.0 99 52.5
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 4.3e-16 88.6 73 54.8
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 7.4e-16 87.8 107 49.5
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 2.8e-15 85.9 101 52.5
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 6.9e-14 81.3 102 46.1
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 6.9e-14 81.3 99 45.5
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 6.9e-14 81.3 81 53.1
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 3.4e-13 79.0 78 57.7
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 1.0e-12 77.4 97 47.4
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 2.9e-12 75.9 101 42.6
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 5.0e-12 75.1 111 48.6
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 1.1e-11 73.9 44 70.5
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 1.6e-10 70.1 102 45.1
FvH4_3g21360 Fragaria vesca HOM05D005731 ORTHO05D012104 2.7e-10 69.3 84 50.0
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 6.1e-10 68.2 101 44.6
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 3.9e-09 65.5 106 44.3
arahy.Tifrunner.gnm1.ann1.8PDC51 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.5e-08 63.5 96 44.8
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 1.4e-06 57.0 107 40.2


User provided reference genes

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