Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 6.2e-51 203.8 98 100.0
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 3.3e-36 154.8 95 76.8
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 1.2e-33 146.4 95 69.5
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 4.5e-33 144.4 95 68.4
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 5.9e-33 144.1 92 69.6
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 5.9e-33 144.1 96 70.8
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 7.7e-33 143.7 95 68.4
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 1.0e-32 143.3 95 68.4
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 1.3e-32 142.9 95 67.4
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 1.3e-32 142.9 93 67.7
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 1.3e-32 142.9 93 68.8
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 2.2e-32 142.1 95 66.3
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 2.2e-32 142.1 95 66.3
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 2.9e-32 141.7 92 69.6
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 2.9e-32 141.7 92 69.6
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 3.8e-32 141.4 91 70.3
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 5.0e-32 141.0 95 67.4
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 5.0e-32 141.0 92 68.5
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 6.5e-32 140.6 95 65.3
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 6.5e-32 140.6 96 66.7
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 6.5e-32 140.6 93 67.7
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 8.5e-32 140.2 95 67.4
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 1.1e-31 139.8 95 66.3
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 1.4e-31 139.4 96 65.6
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 1.9e-31 139.0 96 65.6
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 1.9e-31 139.0 95 68.4
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 1.9e-31 139.0 95 66.3
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 2.5e-31 138.7 95 67.4
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 2.5e-31 138.7 93 66.7
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 2.5e-31 138.7 95 68.4
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 3.2e-31 138.3 95 63.2
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 4.2e-31 137.9 93 65.6
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 4.2e-31 137.9 96 64.6
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 5.5e-31 137.5 92 65.2
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 5.5e-31 137.5 93 65.6
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 7.2e-31 137.1 92 69.6
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 7.2e-31 137.1 95 67.4
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 7.2e-31 137.1 95 64.2
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 7.2e-31 137.1 95 64.2
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 9.4e-31 136.7 96 65.6
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 1.2e-30 136.3 95 63.2
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 1.2e-30 136.3 96 67.7
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 1.2e-30 136.3 92 66.3
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 1.2e-30 136.3 95 66.3
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 1.2e-30 136.3 92 65.2
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 2.1e-30 135.6 95 65.3
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 2.1e-30 135.6 92 67.4
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 2.1e-30 135.6 95 64.2
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 2.7e-30 135.2 95 64.2
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 2.7e-30 135.2 92 67.4
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 2.7e-30 135.2 95 65.3
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 3.6e-30 134.8 95 64.2
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 3.6e-30 134.8 95 64.2
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 4.7e-30 134.4 96 64.6
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 4.7e-30 134.4 96 64.6
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 4.7e-30 134.4 97 66.0
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 6.1e-30 134.0 95 65.3
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 6.1e-30 134.0 95 64.2
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 7.9e-30 133.7 92 64.1
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 7.9e-30 133.7 93 64.5
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 1.4e-29 132.9 95 64.2
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 1.4e-29 132.9 95 65.3
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 1.8e-29 132.5 95 67.4
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 2.3e-29 132.1 92 62.0
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 3.0e-29 131.7 95 65.3
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 3.9e-29 131.3 96 63.5
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 5.1e-29 131.0 93 66.7
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 8.8e-29 130.2 95 63.2
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 1.1e-28 129.8 95 63.2
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 1.1e-28 129.8 95 63.2
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 1.5e-28 129.4 97 61.9
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 1.5e-28 129.4 97 61.9
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 2.6e-28 128.6 96 61.5
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 5.7e-28 127.5 92 64.1
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 5.7e-28 127.5 95 63.2
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 7.4e-28 127.1 95 61.1
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 7.4e-28 127.1 95 60.0
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 1.7e-27 125.9 95 63.2
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 2.8e-27 125.2 97 62.9
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 4.8e-27 124.4 95 61.1
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 6.3e-27 124.0 92 62.0
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 1.4e-26 122.9 95 58.9
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 1.8e-26 122.5 95 61.1
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 2.4e-26 122.1 95 61.1
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 5.3e-26 120.9 104 55.8
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 7.0e-26 120.6 95 62.1
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 1.2e-25 119.8 96 59.4
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 1.5e-25 119.4 87 60.9
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 1.5e-25 119.4 95 60.0
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 1.5e-25 119.4 95 60.0
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 4.5e-25 117.9 92 56.5
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 4.5e-25 117.9 95 60.0
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 7.7e-25 117.1 81 65.4
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 1.0e-24 116.7 77 67.5
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 1.3e-24 116.3 78 67.9
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 1.3e-24 116.3 95 57.9
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 5.0e-24 114.4 85 63.5
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 6.5e-24 114.0 68 79.4
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 6.5e-24 114.0 78 64.1
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 8.5e-24 113.6 95 54.7
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 3.2e-23 111.7 77 68.8
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 5.5e-23 110.9 78 62.8
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 5.5e-23 110.9 95 51.6
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 9.4e-23 110.2 92 63.0
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 9.4e-23 110.2 99 54.5
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 1.6e-22 109.4 82 63.4
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 2.7e-22 108.6 92 62.0
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 2.7e-22 108.6 95 51.6
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 2.7e-22 108.6 96 53.1
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 6.1e-22 107.5 92 62.0
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 8.0e-22 107.1 78 61.5
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 1.8e-21 105.9 92 56.5
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.1e-20 103.2 92 60.9
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 1.1e-20 103.2 97 51.5
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 3.3e-20 101.7 92 50.0
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 3.3e-20 101.7 95 46.3
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 2.2e-19 99.0 96 50.0
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 5.3e-18 94.4 92 51.1
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 1.0e-16 90.1 95 46.3
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 1.3e-16 89.7 91 46.2
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 1.1e-15 86.7 81 48.1
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 6.8e-13 77.4 54 64.8
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 8.3e-11 70.5 100 38.0
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 5.4e-10 67.8 41 65.9
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 9.1e-10 67.0 85 45.9
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 1.1e-07 60.1 91 33.0
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 5.5e-07 57.8 78 37.2


User provided reference genes

Program Settings