Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g066730 Amaranthus hybridus HOM05D014553 ORTHO05D018255 6.1e-58 227.3 113 100.0
Ah.02g119680 Amaranthus hybridus HOM05D014553 ORTHO05D018255 2.1e-26 122.5 68 88.2
Ah.07g198760 Amaranthus hybridus HOM05D014553 ORTHO05D018255 6.8e-25 117.5 69 84.1
Ah.14g081510 Amaranthus hybridus HOM05D014553 ORTHO05D018255 1.4e-22 109.8 68 80.9
Ah.10g026120 Amaranthus hybridus HOM05D014553 ORTHO05D018255 2.5e-19 99.0 54 87.0
Ah.15g099220 Amaranthus hybridus HOM05D014553 ORTHO05D018255 4.3e-19 98.2 74 63.5
Ah.01g010640 Amaranthus hybridus HOM05D014553 ORTHO05D018255 1.5e-16 89.7 70 60.0
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 7.5e-16 87.4 44 97.7
Ah.13g076820 Amaranthus hybridus HOM05D002003 ORTHO05D002037 6.0e-13 77.8 41 85.4
Ah.07g202910 Amaranthus hybridus HOM05D014553 ORTHO05D018255 6.6e-12 74.3 39 89.7
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 3.1e-09 65.5 44 70.5
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 3.1e-09 65.5 44 70.5
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 8.9e-09 63.9 40 72.5
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 1.2e-08 63.5 48 66.7
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 1.2e-08 63.5 48 66.7
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 2.0e-08 62.8 48 66.7
CAN.G2070.2 Capsicum annuum HOM05D005675 ORTHO05D006884 2.6e-08 62.4 87 46.0
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 4.4e-08 61.6 48 66.7
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 4.4e-08 61.6 48 66.7
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 4.4e-08 61.6 48 66.7
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 5.8e-08 61.2 48 64.6
Ah.02g112600 Amaranthus hybridus HOM05D003213 ORTHO05D003693 7.5e-08 60.8 32 81.2
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 7.5e-08 60.8 51 58.8
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 7.5e-08 60.8 38 73.7
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 1.3e-07 60.1 51 58.8
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 1.3e-07 60.1 42 66.7
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 1.3e-07 60.1 37 73.0
Sopen00g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 1.7e-07 59.7 42 69.0
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 2.2e-07 59.3 44 63.6
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 2.9e-07 58.9 42 66.7
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 3.7e-07 58.5 44 63.6
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 4.9e-07 58.2 38 68.4
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 4.9e-07 58.2 44 61.4
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 4.9e-07 58.2 42 64.3
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 8.3e-07 57.4 44 56.8
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 8.3e-07 57.4 38 57.9
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 8.3e-07 57.4 38 57.9
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 8.3e-07 57.4 38 57.9
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 8.3e-07 57.4 38 57.9
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 8.3e-07 57.4 38 57.9
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 1.4e-06 56.6 42 61.9
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 2.4e-06 55.8 44 59.1
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 2.4e-06 55.8 44 59.1
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 2.4e-06 55.8 42 59.5
Ah.16g101790 Amaranthus hybridus HOM05D014553 ORTHO05D003693 4.1e-06 55.1 29 79.3
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 4.1e-06 55.1 43 60.5
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 4.1e-06 55.1 44 61.4
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 4.1e-06 55.1 65 47.7
Ah.05g171320 Amaranthus hybridus HOM05D001049 ORTHO05D001986 5.4e-06 54.7 51 54.9
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 5.4e-06 54.7 38 57.9
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 5.4e-06 54.7 38 57.9
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 5.4e-06 54.7 38 57.9
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 5.4e-06 54.7 38 57.9
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 7.1e-06 54.3 44 56.8
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 7.1e-06 54.3 32 78.1
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 9.2e-06 53.9 78 43.6
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 9.2e-06 53.9 41 53.7
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 9.2e-06 53.9 38 65.8
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 9.2e-06 53.9 43 58.1
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 9.2e-06 53.9 38 65.8
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 9.2e-06 53.9 44 54.5
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 9.2e-06 53.9 44 56.8
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 9.2e-06 53.9 44 59.1
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 9.2e-06 53.9 35 68.6
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 9.2e-06 53.9 44 54.5


User provided reference genes

Program Settings