Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 1.1e-209 733.0 374 100.0
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 2.3e-178 629.0 355 91.0
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 6.7e-154 547.7 355 78.9
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 1.7e-144 516.5 359 74.9
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 7.0e-143 511.1 354 73.7
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 4.4e-137 491.9 355 72.4
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 1.1e-132 477.2 355 70.7
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 4.7e-123 445.3 356 67.7
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 1.8e-122 443.4 352 62.8
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 2.0e-121 439.9 355 63.9
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 9.8e-121 437.6 353 62.6
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 1.3e-120 437.2 353 62.9
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 2.9e-120 436.0 353 62.6
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 8.3e-120 434.5 356 61.8
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 2.4e-119 433.0 355 62.3
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 7.0e-119 431.4 355 60.8
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 7.0e-119 431.4 355 60.8
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 1.2e-118 430.6 355 61.1
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 1.2e-118 430.6 355 61.4
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 4.6e-118 428.7 362 61.3
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 1.3e-117 427.2 358 61.2
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 8.6e-117 424.5 343 63.6
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 1.5e-116 423.7 362 63.0
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 2.1e-115 419.9 368 59.8
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 2.8e-115 419.5 368 59.8
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 3.6e-115 419.1 361 60.1
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 6.2e-115 418.3 355 61.1
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 1.1e-114 417.5 357 62.5
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 2.3e-114 416.4 357 59.4
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 3.1e-114 416.0 361 63.4
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 4.0e-114 415.6 356 59.8
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 8.9e-114 414.5 369 59.9
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 1.2e-113 414.1 384 57.3
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 2.0e-113 413.3 358 59.5
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 2.6e-113 412.9 352 59.9
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 3.4e-113 412.5 360 59.7
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.7e-112 410.2 365 59.7
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 1.4e-111 407.1 358 60.3
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 1.9e-111 406.8 358 60.3
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 3.2e-111 406.0 362 59.1
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 4.1e-111 405.6 362 59.1
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 9.2e-111 404.4 352 59.1
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 9.2e-111 404.4 349 59.0
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 2.7e-110 402.9 352 59.7
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 2.7e-110 402.9 372 58.1
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.0e-109 401.0 355 59.2
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 1.1e-108 397.5 358 58.7
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 1.1e-108 397.5 349 58.5
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 1.5e-108 397.1 361 57.1
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 1.5e-108 397.1 359 59.3
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 4.3e-108 395.6 332 59.3
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 7.3e-108 394.8 360 58.3
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 1.2e-107 394.0 361 56.2
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.2e-107 394.0 355 57.7
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 1.6e-107 393.7 362 55.5
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 2.1e-107 393.3 355 58.0
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 4.7e-107 392.1 358 57.3
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 8.1e-107 391.3 357 57.1
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 1.1e-106 391.0 359 56.8
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 1.1e-106 391.0 321 61.7
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.8e-106 390.2 376 56.9
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 4.0e-106 389.0 357 58.5
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 8.9e-106 387.9 357 58.0
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 1.2e-105 387.5 314 62.1
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 9.9e-105 384.4 362 56.4
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 9.9e-105 384.4 264 73.5
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 2.2e-104 383.3 362 56.4
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 2.9e-104 382.9 357 57.4
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 3.7e-104 382.5 359 56.0
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 6.4e-104 381.7 359 55.7
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 1.2e-102 377.5 369 55.0
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 1.6e-102 377.1 354 56.2
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 2.1e-102 376.7 363 54.3
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 2.1e-102 376.7 381 53.3
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 2.7e-102 376.3 383 53.5
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 3.5e-102 375.9 360 56.9
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 6.0e-102 375.2 354 55.9
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 6.0e-102 375.2 383 52.5
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 6.0e-102 375.2 312 60.9
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.3e-101 374.0 382 53.1
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.0e-101 372.9 378 52.9
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.9e-101 372.5 379 53.3
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 6.6e-101 371.7 363 54.0
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 6.6e-101 371.7 382 52.9
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 1.1e-100 370.9 383 53.0
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 4.3e-100 369.0 353 56.9
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 1.6e-99 367.1 356 54.2
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 4.7e-99 365.5 320 58.8
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 6.2e-99 365.2 355 54.1
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 8.1e-99 364.8 357 54.3
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 8.1e-99 364.8 357 52.9
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 1.8e-98 363.6 339 56.3
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 1.8e-98 363.6 366 53.6
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 2.4e-98 363.2 366 53.0
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 3.1e-98 362.8 264 66.7
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 4.0e-98 362.5 363 52.6
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 4.0e-98 362.5 366 53.6
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 1.2e-97 360.9 364 52.7
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 2.0e-97 360.1 364 52.5
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 3.4e-97 359.4 365 52.3
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 3.4e-97 359.4 365 52.3
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 4.4e-97 359.0 349 53.9
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 9.9e-97 357.8 361 54.0
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 3.8e-96 355.9 362 52.2
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 3.8e-96 355.9 401 49.9
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 4.9e-96 355.5 361 53.2
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 3.2e-95 352.8 265 64.5
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 3.2e-95 352.8 279 63.8
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 7.1e-95 351.7 323 56.7
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 7.1e-95 351.7 279 63.4
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 3.9e-93 345.9 361 53.5
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 9.6e-92 341.3 348 52.0
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 1.8e-90 337.0 330 53.3
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 4.0e-90 335.9 342 55.0
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 9.0e-90 334.7 426 45.5
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 1.2e-89 334.3 359 51.8
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 5.8e-89 332.0 370 52.2
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 7.6e-89 331.6 359 51.5
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 2.2e-88 330.1 317 53.3
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 7.8e-86 321.6 342 48.0
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.7e-85 320.5 342 49.4
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 3.0e-85 319.7 359 50.4
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 3.0e-85 319.7 311 55.6
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 2.1e-83 313.5 339 49.9
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 9.0e-82 308.1 339 47.5
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 4.5e-81 305.8 365 48.2
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 5.8e-81 305.4 358 46.6
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 9.3e-79 298.1 317 51.1
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 1.8e-77 293.9 360 50.0
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 2.8e-75 286.6 220 65.0
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 3.7e-75 286.2 235 59.1
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 3.7e-75 286.2 269 55.8
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 3.8e-72 276.2 382 42.4
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.5e-65 254.2 174 69.0
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 7.6e-65 251.9 302 47.0
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 1.1e-63 248.1 312 45.2
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 1.4e-63 247.7 313 44.7
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 7.1e-63 245.4 313 45.0
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 4.6e-62 242.7 318 43.4
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 6.0e-62 242.3 311 43.7
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 1.8e-61 240.7 313 43.8
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 2.3e-61 240.4 313 43.8
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 3.0e-61 240.0 207 60.9
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 6.7e-61 238.8 321 41.4
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 1.5e-60 237.7 417 37.2
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 1.8e-58 230.7 313 43.5
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 1.5e-57 227.6 331 41.7
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 1.9e-55 220.7 203 55.2
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 6.9e-50 202.2 249 45.4
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 5.3e-42 176.0 129 65.1
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 5.7e-36 156.0 210 42.9
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 4.1e-34 149.8 117 60.7
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 1.8e-26 124.4 162 43.8
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 2.7e-25 120.6 97 57.7
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 8.5e-24 115.5 131 48.9
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 9.4e-23 112.1 149 48.3
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 4.7e-22 109.8 79 63.3
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 4.7e-22 109.8 79 63.3
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.0e-20 104.4 78 61.5
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 9.8e-20 102.1 300 30.3
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 6.3e-19 99.4 231 32.0
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 1.1e-18 98.6 147 42.2
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 8.6e-16 89.0 125 38.4
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 2.6e-12 77.4 102 43.1
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 2.4e-10 70.9 190 31.6
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 3.2e-10 70.5 201 29.9
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 1.6e-09 68.2 78 47.4
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 8.6e-08 62.4 53 50.9
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 8.6e-08 62.4 158 32.9
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 4.3e-07 60.1 53 49.1
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 9.5e-07 58.9 53 49.1
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 9.5e-07 58.9 53 49.1


User provided reference genes

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