Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 2.7e-203 711.8 377 100.0
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 6.7e-194 680.6 373 96.8
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 1.9e-95 353.6 378 58.2
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 2.7e-94 349.7 395 54.7
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.3e-83 314.3 388 51.3
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 2.3e-69 266.9 407 45.5
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 7.4e-68 261.9 305 52.1
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 5.9e-65 252.3 302 52.0
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 5.9e-57 225.7 403 43.7
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 5.5e-47 192.6 332 44.0
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 3.0e-45 186.8 338 40.2
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 8.3e-43 178.7 396 40.2
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 4.1e-42 176.4 399 38.8
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 4.1e-42 176.4 407 38.3
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 1.0e-40 171.8 420 35.7
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 1.3e-40 171.4 325 39.7
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 1.7e-40 171.0 343 39.9
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 2.9e-40 170.2 324 41.0
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 8.6e-40 168.7 323 40.6
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 3.3e-39 166.8 386 37.8
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 9.5e-39 165.2 314 42.0
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 9.5e-39 165.2 322 38.2
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 2.1e-38 164.1 331 37.5
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 3.6e-38 163.3 312 38.8
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 3.6e-38 163.3 410 37.6
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 8.0e-38 162.2 414 36.0
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.8e-37 161.0 323 39.6
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 1.8e-37 161.0 333 38.1
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 4.0e-37 159.8 332 38.6
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 1.2e-36 158.3 327 38.2
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 3.4e-36 156.8 315 39.0
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 9.8e-36 155.2 350 35.7
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 1.3e-35 154.8 318 40.3
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 2.2e-35 154.1 325 39.1
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 2.9e-35 153.7 356 34.8
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 5.4e-34 149.4 313 39.0
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 7.0e-34 149.1 313 39.0
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 7.0e-34 149.1 390 33.6
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 1.6e-33 147.9 313 36.7
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 1.7e-32 144.4 327 37.6
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 3.0e-32 143.7 430 31.2
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 3.0e-32 143.7 309 38.5
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 5.0e-32 142.9 311 37.3
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 8.6e-32 142.1 332 36.1
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 3.3e-31 140.2 325 35.1
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 3.3e-31 140.2 242 40.1
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 5.6e-31 139.4 319 38.2
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 7.3e-31 139.0 304 38.8
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 9.5e-31 138.7 346 37.0
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 9.5e-31 138.7 312 38.5
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 2.1e-30 137.5 409 32.5
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 6.2e-30 136.0 260 38.8
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 1.0e-29 135.2 310 35.8
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 1.4e-29 134.8 330 37.3
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 1.8e-29 134.4 240 40.8
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 4.0e-29 133.3 273 39.9
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 6.8e-29 132.5 367 34.3
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 8.9e-29 132.1 304 37.2
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 1.5e-28 131.3 364 34.6
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 2.0e-28 131.0 320 37.8
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 2.0e-28 131.0 336 33.9
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 2.6e-28 130.6 280 40.7
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 5.8e-28 129.4 433 32.1
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 5.8e-28 129.4 276 39.5
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 7.5e-28 129.0 367 34.3
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 1.7e-27 127.9 359 32.0
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 2.2e-27 127.5 439 30.3
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 8.3e-27 125.6 235 40.9
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 1.4e-26 124.8 315 35.6
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 1.9e-26 124.4 415 33.0
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 1.9e-26 124.4 431 33.6
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 3.2e-26 123.6 300 36.0
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 5.4e-26 122.9 406 33.0
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 5.4e-26 122.9 323 36.8
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 7.0e-26 122.5 229 39.3
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 6.0e-25 119.4 209 41.1
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 6.0e-25 119.4 234 38.0
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 1.0e-24 118.6 347 35.4
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 3.0e-24 117.1 100 63.0
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 5.0e-24 116.3 419 31.7
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 8.6e-24 115.5 391 31.5
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 2.5e-23 114.0 315 33.3
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 7.3e-23 112.5 323 34.4
CSS0015020 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 9.5e-23 112.1 289 35.6
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 9.5e-23 112.1 445 30.6
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 9.5e-23 112.1 116 55.2
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 1.2e-22 111.7 279 36.2
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 2.1e-22 110.9 309 33.7
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 3.6e-22 110.2 90 62.2
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 3.6e-22 110.2 316 34.2
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 4.7e-22 109.8 355 30.4
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 8.1e-22 109.0 336 32.7
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 1.4e-21 108.2 318 34.0
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 1.8e-21 107.8 295 35.9
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 4.0e-21 106.7 354 31.4
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 5.2e-21 106.3 330 32.4
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 6.8e-21 105.9 303 32.0
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 2.0e-20 104.4 228 35.5
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 2.6e-20 104.0 319 34.2
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 9.8e-20 102.1 426 31.0
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 1.7e-19 101.3 329 30.7
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 6.4e-19 99.4 329 29.5
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 1.1e-18 98.6 211 34.6
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 1.9e-18 97.8 326 30.4
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 1.9e-18 97.8 328 30.5
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 5.4e-18 96.3 110 53.6
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 5.4e-18 96.3 128 47.7
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 9.2e-18 95.5 334 30.8
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 6.0e-17 92.8 224 34.8
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 1.1e-15 88.6 319 32.0
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 4.4e-12 76.6 86 47.7
COL.COLO4_21461 Corchorus olitorius HOM05D002505 ORTHO05D006559 1.4e-10 71.6 281 28.1
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 2.4e-10 70.9 70 51.4
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 2.4e-10 70.9 70 51.4
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 1.5e-07 61.6 40 67.5


User provided reference genes

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